Wall clock time and date at job start Mon Mar 30 2020 02:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46897 * 2 1 4 4 C 1.52993 * 109.51083 * 65.43899 * 3 2 1 5 5 C 1.53093 * 109.50608 * 305.34736 * 3 2 1 6 6 O 1.43016 * 109.26339 * 183.17627 * 5 3 2 7 7 C 1.43017 * 113.73355 * 58.66770 * 6 5 3 8 8 C 1.53094 * 109.30033 * 301.31013 * 7 6 5 9 9 N 1.47013 * 109.53973 * 185.54887 * 3 2 1 10 10 C 1.46904 * 111.00030 * 302.34118 * 9 3 2 11 11 H 1.09003 * 109.47023 * 43.63739 * 10 9 3 12 12 C 1.52998 * 109.47339 * 163.63473 * 10 9 3 13 13 C 1.50700 * 109.47464 * 283.64055 * 10 9 3 14 14 H 1.08006 * 119.99640 * 355.18333 * 13 10 9 15 15 C 1.37874 * 120.00068 * 175.18586 * 13 10 9 16 16 N 1.31516 * 120.00091 * 0.02562 * 15 13 10 17 17 Si 1.86801 * 119.99848 * 179.97438 * 15 13 10 18 18 H 1.48496 * 109.47293 * 59.99808 * 17 15 13 19 19 H 1.48502 * 109.46842 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.46858 * 299.99998 * 17 15 13 21 21 H 1.08996 * 109.47645 * 300.00555 * 1 2 3 22 22 H 1.08999 * 109.46826 * 60.01034 * 1 2 3 23 23 H 1.09001 * 109.47019 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47301 * 239.99026 * 2 1 3 25 25 H 1.09002 * 109.46441 * 119.99311 * 2 1 3 26 26 H 1.09007 * 109.47194 * 299.91158 * 4 3 2 27 27 H 1.08994 * 109.47550 * 59.91151 * 4 3 2 28 28 H 1.09003 * 109.47296 * 179.91643 * 4 3 2 29 29 H 1.09003 * 109.50974 * 63.23722 * 5 3 2 30 30 H 1.09004 * 109.54505 * 303.13318 * 5 3 2 31 31 H 1.08998 * 109.50880 * 61.27327 * 7 6 5 32 32 H 1.09005 * 109.50759 * 181.35314 * 7 6 5 33 33 H 1.08996 * 109.51137 * 176.80534 * 8 7 6 34 34 H 1.08997 * 109.50386 * 296.93977 * 8 7 6 35 35 H 1.09005 * 109.47306 * 57.64747 * 12 10 9 36 36 H 1.08998 * 109.47191 * 177.64755 * 12 10 9 37 37 H 1.08998 * 109.47062 * 297.64778 * 12 10 9 38 38 H 0.96998 * 119.99826 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6451 2.1240 1.3116 5 6 1.4232 2.2027 -1.1771 6 8 1.9597 3.5279 -1.2160 7 6 3.3833 3.5689 -1.3465 8 6 4.0209 2.8233 -0.1712 9 7 3.5040 1.4465 -0.1340 10 6 4.1337 0.6772 0.9476 11 1 3.5837 -0.2513 1.1009 12 6 5.5810 0.3562 0.5694 13 6 4.1144 1.4880 2.2178 14 1 3.7492 2.5043 2.2042 15 6 4.5629 0.9323 3.3972 16 7 5.0081 -0.3051 3.4136 17 14 4.5397 1.9375 4.9715 18 1 3.1456 2.3484 5.2759 19 1 5.0701 1.1175 6.0902 20 1 5.3856 3.1460 4.7997 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5140 -0.8899 25 1 1.8932 -0.5138 0.8901 26 1 0.5594 2.1242 1.4085 27 1 2.0845 1.5824 2.1492 28 1 2.0100 3.1512 1.3116 29 1 0.3414 2.2515 -1.0522 30 1 1.6591 1.6871 -2.1080 31 1 3.6769 3.0928 -2.2820 32 1 3.7192 4.6059 -1.3448 33 1 5.1034 2.8035 -0.2968 34 1 3.7711 3.3310 0.7604 35 1 6.1201 1.2835 0.3753 36 1 6.0608 -0.1782 1.3893 37 1 5.5932 -0.2654 -0.3259 38 1 5.3233 -0.6962 4.2435 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687868834.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:21 Heat of formation + Delta-G solvation = -35.643580 kcal Electronic energy + Delta-G solvation = -17778.987636 eV Core-core repulsion = 15235.872808 eV Total energy + Delta-G solvation = -2543.114828 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.73444 -36.03430 -34.18471 -32.28573 -29.47655 -29.21605 -26.87707 -25.59427 -24.79172 -23.90106 -21.11009 -20.22205 -17.72076 -16.42630 -16.01673 -15.35120 -14.92267 -14.49220 -14.26325 -13.57272 -13.33828 -13.12743 -12.59962 -12.35404 -11.97144 -11.52263 -11.39692 -11.21010 -10.99025 -10.91805 -10.73725 -10.66590 -10.49755 -10.24964 -10.09291 -10.02858 -9.62305 -9.47053 -9.10366 -8.59241 -8.36512 -7.13750 -6.01643 -4.07535 3.27015 3.32462 3.35533 4.37853 4.38875 4.88361 5.24826 5.43761 5.50074 5.62864 5.69307 5.79836 5.87584 5.90450 6.01833 6.14031 6.19454 6.31043 6.37741 6.47675 6.66526 6.68558 6.76624 6.84315 6.92045 6.99712 7.09222 7.23949 7.43786 7.54352 7.68120 7.72461 7.94854 8.14591 8.29660 8.45724 8.97397 9.54395 11.00513 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026560 B = 0.010906 C = 0.010200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.955328 B = 2566.674173 C = 2744.367909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.109 4.109 3 C 0.087 3.913 4 C -0.180 4.180 5 C 0.074 3.926 6 O -0.391 6.391 7 C 0.061 3.939 8 C 0.022 3.978 9 N -0.527 5.527 10 C 0.201 3.799 11 H 0.050 0.950 12 C -0.125 4.125 13 C -0.538 4.538 14 H 0.067 0.933 15 C 0.066 3.934 16 N -0.887 5.887 17 Si 0.883 3.117 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.278 1.278 21 H 0.056 0.944 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.060 0.940 25 H 0.077 0.923 26 H 0.031 0.969 27 H 0.104 0.896 28 H 0.048 0.952 29 H 0.087 0.913 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.024 0.976 36 H 0.075 0.925 37 H 0.014 0.986 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.178 2.691 -6.621 8.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C -0.004 4.004 4 C -0.238 4.238 5 C -0.003 4.003 6 O -0.310 6.310 7 C -0.016 4.016 8 C -0.106 4.106 9 N -0.252 5.252 10 C 0.095 3.905 11 H 0.068 0.932 12 C -0.183 4.183 13 C -0.577 4.577 14 H 0.085 0.915 15 C -0.136 4.136 16 N -0.525 5.525 17 Si 0.711 3.289 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.204 1.204 21 H 0.075 0.925 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.079 0.921 25 H 0.095 0.905 26 H 0.050 0.950 27 H 0.123 0.877 28 H 0.067 0.933 29 H 0.105 0.895 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.043 0.957 36 H 0.094 0.906 37 H 0.033 0.967 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.077 2.477 -6.938 8.947 hybrid contribution 0.100 0.700 1.757 1.894 sum -4.977 3.177 -5.181 7.855 Atomic orbital electron populations 1.21882 0.96696 1.00957 1.01437 1.21535 0.94360 0.95928 1.02872 1.21383 0.89840 0.94841 0.94291 1.22844 0.99027 1.01436 1.00474 1.22770 0.97379 0.82972 0.97203 1.87881 1.21109 1.27408 1.94553 1.22714 0.80923 0.99938 0.98007 1.22646 0.99582 0.90955 0.97444 1.62893 1.02689 1.11646 1.47924 1.19388 0.91615 0.93641 0.85880 0.93249 1.21707 0.98953 0.98649 0.98978 1.21861 1.41971 1.00153 0.93688 0.91539 1.24904 0.95168 0.94827 0.98704 1.69899 1.42380 1.13125 1.27104 0.86807 0.78429 0.80319 0.83389 1.20281 1.21337 1.20368 0.92512 0.93208 0.93232 0.92134 0.90465 0.95020 0.87733 0.93306 0.89547 0.93560 0.93517 0.89843 0.90691 0.92538 0.95681 0.90644 0.96710 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.18 37.16 0.34 -1.85 16 2 C -0.11 -1.93 4.57 -26.73 -0.12 -2.05 16 3 C 0.09 1.64 0.46 -131.50 -0.06 1.58 16 4 C -0.18 -3.63 6.50 37.15 0.24 -3.39 16 5 C 0.07 1.25 5.08 37.21 0.19 1.44 16 6 O -0.39 -7.10 10.28 -35.23 -0.36 -7.47 16 7 C 0.06 1.04 7.00 37.21 0.26 1.30 16 8 C 0.02 0.44 4.63 -3.66 -0.02 0.42 16 9 N -0.53 -10.99 4.44 -212.10 -0.94 -11.94 16 10 C 0.20 4.79 1.94 -68.86 -0.13 4.66 16 11 H 0.05 1.29 5.63 -51.93 -0.29 0.99 16 12 C -0.12 -2.95 9.14 37.16 0.34 -2.61 16 13 C -0.54 -13.69 4.97 -34.44 -0.17 -13.86 16 14 H 0.07 1.70 4.30 -52.48 -0.23 1.48 16 15 C 0.07 1.75 5.31 -17.82 -0.09 1.66 16 16 N -0.89 -24.42 11.67 55.43 0.65 -23.77 16 17 Si 0.88 20.80 29.54 -169.99 -5.02 15.78 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H 0.06 0.83 6.58 -51.93 -0.34 0.49 16 22 H 0.05 0.64 6.42 -51.93 -0.33 0.31 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.08 1.56 6.35 -51.93 -0.33 1.23 16 26 H 0.03 0.57 6.59 -51.93 -0.34 0.23 16 27 H 0.10 2.43 5.18 -51.93 -0.27 2.16 16 28 H 0.05 1.03 5.79 -51.93 -0.30 0.73 16 29 H 0.09 1.32 6.55 -51.93 -0.34 0.98 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.07 1.48 6.62 -51.93 -0.34 1.14 16 34 H 0.06 1.23 4.47 -51.93 -0.23 1.00 16 35 H 0.02 0.56 6.67 -51.93 -0.35 0.22 16 36 H 0.07 1.95 6.41 -51.93 -0.33 1.62 16 37 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 270.77 15.07 4.08 4.08 Total: -1.00 -26.77 270.77 -6.53 -33.29 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -5.70 Total: 2.72 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: 0.77 Total: -12.70 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: -0.30 Total: -35.70 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: -0.36 Total: -7.47 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -26.77 -6.53 -33.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687868834.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.349 kcal (2) G-P(sol) polarization free energy of solvation -26.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds