Wall clock time and date at job start Mon Mar 30 2020 03:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46948 * 2 1 4 4 C 1.53003 * 109.46584 * 179.97438 * 3 2 1 5 5 H 1.08999 * 110.46323 * 305.79372 * 4 3 2 6 6 C 1.54480 * 110.50904 * 68.54583 * 4 3 2 7 7 O 1.44430 * 104.80384 * 142.62027 * 6 4 3 8 8 C 1.44429 * 105.27211 * 319.48858 * 7 6 4 9 9 C 1.54470 * 104.80599 * 40.51184 * 8 7 6 10 10 H 1.08999 * 110.51423 * 94.66640 * 9 8 7 11 11 N 1.46907 * 110.62977 * 217.32259 * 9 8 7 12 12 C 1.46905 * 110.99599 * 320.70823 * 11 9 8 13 13 C 1.46899 * 110.99983 * 196.75786 * 11 9 8 14 14 C 1.50701 * 109.47072 * 189.99458 * 13 11 9 15 15 H 1.08000 * 119.99568 * 0.02562 * 14 13 11 16 16 C 1.37877 * 120.00297 * 179.97438 * 14 13 11 17 17 N 1.31514 * 119.99561 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99909 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47308 * 60.00442 * 18 16 14 20 20 H 1.48504 * 109.46666 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47248 * 299.99812 * 18 16 14 22 22 H 1.09004 * 109.46449 * 299.99842 * 1 2 3 23 23 H 1.08994 * 109.47004 * 59.99284 * 1 2 3 24 24 H 1.09001 * 109.47261 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47022 * 240.00400 * 2 1 3 26 26 H 1.08999 * 109.47352 * 120.00060 * 2 1 3 27 27 H 1.08996 * 109.46932 * 60.00345 * 3 2 1 28 28 H 1.09000 * 109.47162 * 299.99633 * 3 2 1 29 29 H 1.09001 * 110.37565 * 261.44793 * 6 4 3 30 30 H 1.09002 * 110.37390 * 23.67770 * 6 4 3 31 31 H 1.08999 * 110.37054 * 281.67337 * 8 7 6 32 32 H 1.08999 * 110.37043 * 159.34187 * 8 7 6 33 33 H 1.08997 * 109.46929 * 65.77828 * 12 11 9 34 34 H 1.08995 * 109.47001 * 185.78106 * 12 11 9 35 35 H 1.09002 * 109.46886 * 305.78282 * 12 11 9 36 36 H 1.08998 * 109.47068 * 309.99751 * 13 11 9 37 37 H 1.09001 * 109.47095 * 70.00037 * 13 11 9 38 38 H 0.97003 * 119.99593 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9507 0.8453 0.8292 6 6 4.1118 0.9130 -1.3457 7 8 5.2805 1.7177 -1.6152 8 6 4.9163 3.0600 -1.2262 9 6 4.1115 2.8874 0.0810 10 1 4.7617 3.0039 0.9481 11 7 3.0031 3.8499 0.1373 12 6 3.4138 5.1573 -0.3919 13 6 2.4839 3.9755 1.5058 14 6 1.2050 4.7724 1.4867 15 1 0.8166 5.1477 0.5514 16 6 0.5303 5.0216 2.6630 17 7 1.0032 4.5642 3.8018 18 14 -1.0552 6.0088 2.6392 19 1 -2.0575 5.3153 1.7908 20 1 -1.5806 6.1348 4.0224 21 1 -0.7884 7.3606 2.0854 22 1 -0.3632 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9564 -0.8900 29 1 4.3870 -0.1380 -1.2571 30 1 3.3686 1.0450 -2.1321 31 1 4.2973 3.5230 -1.9946 32 1 5.8093 3.6583 -1.0457 33 1 3.6302 5.0666 -1.4564 34 1 2.6094 5.8779 -0.2447 35 1 4.3068 5.4973 0.1326 36 1 2.2878 2.9834 1.9124 37 1 3.2198 4.4844 2.1283 38 1 0.5283 4.7392 4.6293 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688225579.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:31 Heat of formation + Delta-G solvation = -47.697048 kcal Electronic energy + Delta-G solvation = -16943.761141 eV Core-core repulsion = 14400.123635 eV Total energy + Delta-G solvation = -2543.637506 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.61569 -36.03143 -34.66923 -32.59622 -30.63545 -28.74647 -26.89046 -25.40186 -25.07492 -22.10180 -21.52571 -20.50081 -18.84575 -16.55817 -16.05652 -15.59321 -15.20285 -14.79166 -14.24586 -13.83179 -13.62105 -13.19466 -12.98734 -12.45821 -12.07258 -11.97038 -11.81021 -11.55036 -11.21765 -10.93792 -10.87606 -10.66342 -10.64417 -10.40333 -10.12497 -10.06046 -9.84461 -9.75438 -9.31619 -9.13470 -8.42715 -7.25992 -6.05375 -4.06672 3.31198 3.35778 3.38307 4.23925 4.40882 4.93430 4.99525 5.19430 5.26688 5.30577 5.50094 5.56511 5.62318 5.68718 5.73369 5.98877 6.01307 6.08321 6.12590 6.17037 6.23089 6.29217 6.38921 6.40723 6.51760 6.64155 6.73738 6.93462 7.03611 7.09983 7.30745 7.46904 7.77827 8.06096 8.15584 8.50754 9.00803 9.57518 11.05250 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024635 B = 0.008988 C = 0.007238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.316319 B = 3114.579287 C = 3867.438543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C -0.105 4.105 4 C -0.108 4.108 5 H 0.072 0.928 6 C 0.053 3.947 7 O -0.385 6.385 8 C 0.047 3.953 9 C 0.052 3.948 10 H 0.047 0.953 11 N -0.526 5.526 12 C 0.029 3.971 13 C 0.189 3.811 14 C -0.506 4.506 15 H 0.063 0.937 16 C 0.057 3.943 17 N -0.898 5.898 18 Si 0.896 3.104 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.278 1.278 22 H 0.058 0.942 23 H 0.051 0.949 24 H 0.043 0.957 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.098 0.902 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.010 0.990 36 H 0.040 0.960 37 H -0.012 1.012 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.531 -5.801 -7.890 10.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.142 4.142 4 C -0.127 4.127 5 H 0.090 0.910 6 C -0.024 4.024 7 O -0.304 6.304 8 C -0.030 4.030 9 C -0.058 4.058 10 H 0.064 0.936 11 N -0.251 5.251 12 C -0.120 4.120 13 C 0.064 3.936 14 C -0.545 4.545 15 H 0.081 0.919 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.724 3.276 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.203 1.203 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.116 0.884 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.029 0.971 36 H 0.058 0.942 37 H 0.006 0.994 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.323 -6.055 -8.076 10.627 hybrid contribution -0.363 0.929 0.822 1.292 sum 2.961 -5.126 -7.254 9.363 Atomic orbital electron populations 1.21730 0.96171 1.00409 1.02355 1.21614 0.95855 0.98272 1.00576 1.21684 0.92188 0.94685 1.05649 1.22492 0.97947 0.95229 0.97043 0.90962 1.23507 0.87439 0.95203 0.96213 1.89039 1.35853 1.19392 1.86097 1.23651 0.98655 0.84692 0.95959 1.22974 0.92351 0.93896 0.96568 0.93554 1.62297 1.28803 1.07303 1.26685 1.22325 0.99450 0.92428 0.97751 1.19897 0.94450 0.97375 0.81855 1.21087 1.07028 1.33173 0.93220 0.91912 1.24968 0.97876 0.96182 0.95462 1.69948 1.39650 1.46012 0.98090 0.86593 0.83594 0.80518 0.76902 1.20151 1.21404 1.20347 0.92254 0.92939 0.93798 0.93251 0.92842 0.88424 0.91221 0.89998 0.92253 0.91232 0.89940 0.93262 0.90339 0.97133 0.94192 0.99406 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 37.16 0.37 -1.78 16 2 C -0.13 -1.84 5.80 -26.73 -0.15 -1.99 16 3 C -0.10 -1.82 3.56 -26.73 -0.10 -1.92 16 4 C -0.11 -1.79 3.01 -89.05 -0.27 -2.05 16 5 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 6 C 0.05 0.78 6.42 37.93 0.24 1.03 16 7 O -0.39 -6.34 11.65 -35.23 -0.41 -6.75 16 8 C 0.05 0.75 6.13 37.93 0.23 0.98 16 9 C 0.05 0.94 2.95 -66.14 -0.20 0.74 16 10 H 0.05 0.89 7.98 -51.93 -0.41 0.48 16 11 N -0.53 -10.79 3.42 -234.44 -0.80 -11.59 16 12 C 0.03 0.54 8.66 60.07 0.52 1.06 16 13 C 0.19 4.71 3.73 -4.98 -0.02 4.69 16 14 C -0.51 -13.64 8.37 -34.44 -0.29 -13.93 16 15 H 0.06 1.68 7.18 -52.49 -0.38 1.30 16 16 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -26.05 13.29 55.43 0.74 -25.31 16 18 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.64 7.56 -51.93 -0.39 0.25 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.10 2.07 4.76 -51.93 -0.25 1.83 16 28 H 0.07 1.27 7.85 -51.93 -0.41 0.87 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.06 0.85 7.77 -51.93 -0.40 0.45 16 31 H 0.07 1.09 6.37 -51.93 -0.33 0.76 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 0.79 6.19 -51.93 -0.32 0.47 16 34 H 0.08 1.59 6.65 -51.93 -0.35 1.25 16 35 H 0.01 0.19 8.12 -51.93 -0.42 -0.23 16 36 H 0.04 1.06 5.71 -51.93 -0.30 0.76 16 37 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 38 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 292.80 15.07 4.41 4.41 Total: -1.00 -28.20 292.80 -7.31 -35.51 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -6.47 Total: -0.77 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: 0.25 Total: -11.71 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: -0.06 Total: -36.91 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: -0.41 Total: -6.75 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.20 -7.31 -35.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688225579.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.189 kcal (2) G-P(sol) polarization free energy of solvation -28.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds