Wall clock time and date at job start Mon Mar 30 2020 03:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46948 * 2 1 4 4 C 1.53003 * 109.46584 * 179.97438 * 3 2 1 5 5 H 1.08999 * 110.46323 * 305.79372 * 4 3 2 6 6 C 1.54480 * 110.50904 * 68.54583 * 4 3 2 7 7 O 1.44430 * 104.80384 * 142.62027 * 6 4 3 8 8 C 1.44429 * 105.27211 * 319.48858 * 7 6 4 9 9 C 1.54470 * 104.80599 * 40.51184 * 8 7 6 10 10 H 1.08999 * 110.51423 * 94.66640 * 9 8 7 11 11 N 1.46907 * 110.62977 * 217.32259 * 9 8 7 12 12 C 1.46905 * 110.99599 * 320.70823 * 11 9 8 13 13 C 1.46899 * 110.99983 * 196.75786 * 11 9 8 14 14 C 1.50701 * 109.47072 * 189.99458 * 13 11 9 15 15 H 1.08000 * 119.99568 * 0.02562 * 14 13 11 16 16 C 1.37877 * 120.00297 * 179.97438 * 14 13 11 17 17 N 1.31514 * 119.99561 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99909 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47308 * 60.00442 * 18 16 14 20 20 H 1.48504 * 109.46666 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47248 * 299.99812 * 18 16 14 22 22 H 1.09004 * 109.46449 * 299.99842 * 1 2 3 23 23 H 1.08994 * 109.47004 * 59.99284 * 1 2 3 24 24 H 1.09001 * 109.47261 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47022 * 240.00400 * 2 1 3 26 26 H 1.08999 * 109.47352 * 120.00060 * 2 1 3 27 27 H 1.08996 * 109.46932 * 60.00345 * 3 2 1 28 28 H 1.09000 * 109.47162 * 299.99633 * 3 2 1 29 29 H 1.09001 * 110.37565 * 261.44793 * 6 4 3 30 30 H 1.09002 * 110.37390 * 23.67770 * 6 4 3 31 31 H 1.08999 * 110.37054 * 281.67337 * 8 7 6 32 32 H 1.08999 * 110.37043 * 159.34187 * 8 7 6 33 33 H 1.08997 * 109.46929 * 65.77828 * 12 11 9 34 34 H 1.08995 * 109.47001 * 185.78106 * 12 11 9 35 35 H 1.09002 * 109.46886 * 305.78282 * 12 11 9 36 36 H 1.08998 * 109.47068 * 309.99751 * 13 11 9 37 37 H 1.09001 * 109.47095 * 70.00037 * 13 11 9 38 38 H 0.97003 * 119.99593 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9507 0.8453 0.8292 6 6 4.1118 0.9130 -1.3457 7 8 5.2805 1.7177 -1.6152 8 6 4.9163 3.0600 -1.2262 9 6 4.1115 2.8874 0.0810 10 1 4.7617 3.0039 0.9481 11 7 3.0031 3.8499 0.1373 12 6 3.4138 5.1573 -0.3919 13 6 2.4839 3.9755 1.5058 14 6 1.2050 4.7724 1.4867 15 1 0.8166 5.1477 0.5514 16 6 0.5303 5.0216 2.6630 17 7 1.0032 4.5642 3.8018 18 14 -1.0552 6.0088 2.6392 19 1 -2.0575 5.3153 1.7908 20 1 -1.5806 6.1348 4.0224 21 1 -0.7884 7.3606 2.0854 22 1 -0.3632 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9564 -0.8900 29 1 4.3870 -0.1380 -1.2571 30 1 3.3686 1.0450 -2.1321 31 1 4.2973 3.5230 -1.9946 32 1 5.8093 3.6583 -1.0457 33 1 3.6302 5.0666 -1.4564 34 1 2.6094 5.8779 -0.2447 35 1 4.3068 5.4973 0.1326 36 1 2.2878 2.9834 1.9124 37 1 3.2198 4.4844 2.1283 38 1 0.5283 4.7392 4.6293 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688225579.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:31 Heat of formation + Delta-G solvation = -65.179869 kcal Electronic energy + Delta-G solvation = -16944.519253 eV Core-core repulsion = 14400.123635 eV Total energy + Delta-G solvation = -2544.395618 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.99302 -37.60789 -35.99630 -34.64882 -31.97351 -30.38130 -28.51557 -26.86888 -26.68225 -23.65545 -23.07929 -21.87484 -20.32313 -18.51943 -17.46572 -17.04438 -16.66202 -16.54436 -15.69257 -15.38097 -15.15346 -14.68982 -14.46166 -13.89248 -13.78269 -13.43739 -13.20644 -12.98806 -12.91281 -12.74391 -12.39789 -12.25877 -12.15666 -11.90423 -11.78288 -11.46750 -11.34406 -11.25454 -10.96533 -10.67266 -10.50854 -8.98649 -8.18523 -6.27226 1.41235 1.43497 1.51137 2.40375 2.95360 3.14770 3.38129 3.66300 3.89345 3.93809 4.22862 4.32052 4.37109 4.43719 4.47980 4.53241 4.69346 4.74305 4.80635 4.86085 4.89641 5.00374 5.07868 5.13049 5.16906 5.23104 5.24691 5.30101 5.45677 5.60214 5.65898 5.76300 5.88756 6.09225 6.32701 6.64246 6.88575 7.41810 8.92229 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024635 B = 0.008988 C = 0.007238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.316319 B = 3114.579287 C = 3867.438543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.094 4.094 4 C -0.109 4.109 5 H 0.071 0.929 6 C 0.059 3.941 7 O -0.392 6.392 8 C 0.057 3.943 9 C 0.043 3.957 10 H 0.028 0.972 11 N -0.524 5.524 12 C 0.029 3.971 13 C 0.208 3.792 14 C -0.515 4.515 15 H 0.063 0.937 16 C 0.004 3.996 17 N -0.934 5.934 18 Si 0.963 3.037 19 H -0.268 1.268 20 H -0.286 1.286 21 H -0.269 1.269 22 H 0.033 0.967 23 H 0.053 0.947 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.012 0.988 36 H 0.021 0.979 37 H -0.049 1.049 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.366 -6.399 -9.792 12.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.132 4.132 4 C -0.128 4.128 5 H 0.089 0.911 6 C -0.017 4.017 7 O -0.311 6.311 8 C -0.020 4.020 9 C -0.067 4.067 10 H 0.046 0.954 11 N -0.249 5.249 12 C -0.119 4.119 13 C 0.082 3.918 14 C -0.554 4.554 15 H 0.081 0.919 16 C -0.194 4.194 17 N -0.575 5.575 18 Si 0.788 3.212 19 H -0.193 1.193 20 H -0.212 1.212 21 H -0.194 1.194 22 H 0.052 0.948 23 H 0.072 0.928 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.126 0.874 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.116 0.884 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.030 0.970 36 H 0.038 0.962 37 H -0.032 1.032 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.169 -6.654 -10.002 12.424 hybrid contribution -0.267 1.091 1.407 1.801 sum 2.901 -5.562 -8.595 10.641 Atomic orbital electron populations 1.21724 0.96084 1.01621 1.01170 1.21576 0.95922 0.96363 1.01912 1.21471 0.92772 0.96132 1.02792 1.22504 0.97335 0.94329 0.98632 0.91079 1.23569 0.87155 0.96202 0.94763 1.89041 1.36542 1.19512 1.85973 1.23596 0.98965 0.85042 0.94395 1.23098 0.91738 0.94309 0.97515 0.95369 1.62223 1.30378 1.08706 1.23613 1.22367 0.98717 0.91087 0.99726 1.19519 0.93155 0.95426 0.83686 1.21375 1.07673 1.33052 0.93259 0.91867 1.25834 1.01292 0.97244 0.95063 1.70081 1.41224 1.47421 0.98726 0.85532 0.79446 0.79227 0.77010 1.19326 1.21150 1.19383 0.94806 0.92759 0.91379 0.90521 0.92728 0.92935 0.92181 0.87427 0.91284 0.90434 0.88448 0.89777 0.92188 0.96970 0.96159 1.03151 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.12 9.91 71.98 0.71 -3.41 16 2 C -0.12 -3.34 5.80 30.60 0.18 -3.16 16 3 C -0.09 -3.26 3.56 30.60 0.11 -3.15 16 4 C -0.11 -3.51 3.01 -9.77 -0.03 -3.54 16 5 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 6 C 0.06 1.58 6.42 72.49 0.47 2.04 16 7 O -0.39 -11.77 11.65 -148.98 -1.74 -13.50 16 8 C 0.06 1.68 6.13 72.48 0.44 2.13 16 9 C 0.04 1.54 2.95 45.93 0.14 1.68 16 10 H 0.03 1.12 7.98 -2.39 -0.02 1.10 16 11 N -0.52 -21.79 3.42 -895.62 -3.06 -24.85 16 12 C 0.03 1.07 8.66 127.69 1.11 2.18 16 13 C 0.21 10.83 3.73 85.56 0.32 11.15 16 14 C -0.52 -28.46 8.37 25.60 0.21 -28.24 16 15 H 0.06 3.42 7.18 -2.91 -0.02 3.40 16 16 C 0.00 0.21 5.46 84.65 0.46 0.67 16 17 N -0.93 -55.81 13.29 21.45 0.28 -55.53 16 18 Si 0.96 43.91 29.54 68.60 2.03 45.93 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 22 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.08 1.74 7.56 -2.39 -0.02 1.72 16 26 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.05 2.32 4.76 -2.39 -0.01 2.31 16 28 H 0.06 2.16 7.85 -2.39 -0.02 2.14 16 29 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.07 1.73 7.77 -2.39 -0.02 1.72 16 31 H 0.08 2.19 6.37 -2.39 -0.02 2.18 16 32 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.08 2.52 6.19 -2.39 -0.01 2.50 16 34 H 0.06 2.43 6.65 -2.39 -0.02 2.42 16 35 H 0.01 0.43 8.12 -2.39 -0.02 0.41 16 36 H 0.02 1.15 5.71 -2.39 -0.01 1.13 16 37 H -0.05 -2.86 8.12 -2.39 -0.02 -2.88 16 38 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -61.68 292.80 2.64 -59.03 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 1.01 Total: 10.57 kcal Atomic # 6 Polarization: -25.77 SS G_CDS: 4.12 Total: -21.65 kcal Atomic # 7 Polarization: -77.60 SS G_CDS: -2.78 Total: -80.38 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -1.74 Total: -13.50 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -61.68 2.64 -59.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688225579.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.145 kcal (2) G-P(sol) polarization free energy of solvation -61.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds