Wall clock time and date at job start Mon Mar 30 2020 02:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.99286 * 2 1 4 4 O 1.43748 * 109.87610 * 238.91973 * 2 1 3 5 5 C 1.44385 * 106.97279 * 214.05995 * 4 2 1 6 6 C 1.54991 * 103.49171 * 40.06030 * 5 4 2 7 7 C 1.54097 * 109.88428 * 121.08775 * 2 1 3 8 8 H 1.08994 * 110.49002 * 240.26697 * 7 2 1 9 9 C 1.53004 * 110.48306 * 2.77471 * 7 2 1 10 10 N 1.46901 * 109.46916 * 185.00014 * 9 7 2 11 11 C 1.46905 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47039 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47393 * 180.02562 * 12 11 10 14 14 H 1.08010 * 119.99765 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00736 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00590 * 179.97438 * 15 13 12 17 17 Si 1.86807 * 119.99710 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47209 * 89.99893 * 17 15 13 19 19 H 1.48500 * 109.47295 * 209.99804 * 17 15 13 20 20 H 1.48503 * 109.47210 * 329.99849 * 17 15 13 21 21 H 1.08998 * 109.47004 * 298.91081 * 1 2 3 22 22 H 1.09002 * 109.47189 * 58.91593 * 1 2 3 23 23 H 1.09004 * 109.47208 * 178.91471 * 1 2 3 24 24 H 1.08997 * 109.47806 * 181.08878 * 3 2 1 25 25 H 1.09003 * 109.47155 * 301.08993 * 3 2 1 26 26 H 1.09000 * 109.47178 * 61.08093 * 3 2 1 27 27 H 1.09001 * 110.61653 * 158.55898 * 5 4 2 28 28 H 1.09000 * 110.61691 * 281.55676 * 5 4 2 29 29 H 1.08997 * 110.91224 * 204.77708 * 6 5 4 30 30 H 1.09003 * 110.90927 * 81.17038 * 6 5 4 31 31 H 1.09004 * 109.46889 * 65.00395 * 9 7 2 32 32 H 1.08995 * 109.47384 * 305.00035 * 9 7 2 33 33 H 1.00901 * 111.00067 * 303.95263 * 10 9 7 34 34 H 1.09001 * 109.46798 * 300.00327 * 11 10 9 35 35 H 1.08998 * 109.46961 * 60.00043 * 11 10 9 36 36 H 1.09001 * 109.47393 * 299.99719 * 12 11 10 37 37 H 1.08998 * 109.47408 * 60.00073 * 12 11 10 38 38 H 0.97002 * 120.00416 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0530 1.4377 0.0000 4 8 2.0187 -0.6979 -1.1578 5 6 3.2379 -1.3641 -0.7649 6 6 2.9196 -1.8914 0.6574 7 6 2.0540 -0.7482 1.2410 8 1 2.6600 -0.0853 1.8585 9 6 0.8899 -1.3191 2.0533 10 7 1.4050 -1.9224 3.2897 11 6 0.3128 -2.4827 4.0968 12 6 0.8869 -3.1000 5.3735 13 6 -0.2333 -3.6754 6.2011 14 1 -1.2530 -3.6072 5.8516 15 6 0.0433 -4.2889 7.4044 16 7 -0.9344 -4.7906 8.1269 17 14 1.8068 -4.4063 8.0093 18 1 2.1299 -3.2105 8.8283 19 1 1.9663 -5.6299 8.8356 20 1 2.7262 -4.4720 6.8450 21 1 -0.3633 0.4968 0.8996 22 1 -0.3634 0.5306 -0.8801 23 1 -0.3634 -1.0275 -0.0195 24 1 3.1428 1.4280 -0.0195 25 1 1.6786 1.9606 -0.8801 26 1 1.7103 1.9491 0.8995 27 1 3.4584 -2.1907 -1.4403 28 1 4.0684 -0.6588 -0.7358 29 1 3.8332 -2.0225 1.2372 30 1 2.3539 -2.8220 0.6097 31 1 0.3748 -2.0788 1.4655 32 1 0.1936 -0.5184 2.3024 33 1 2.1011 -2.6241 3.0870 34 1 -0.3879 -1.6903 4.3600 35 1 -0.2060 -3.2506 3.5229 36 1 1.5878 -3.8924 5.1106 37 1 1.4054 -2.3319 5.9472 38 1 -0.7397 -5.2225 8.9733 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693167722.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:25 Heat of formation + Delta-G solvation = -62.723387 kcal Electronic energy + Delta-G solvation = -16103.075872 eV Core-core repulsion = 13558.786775 eV Total energy + Delta-G solvation = -2544.289097 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.26070 -36.22824 -33.71790 -32.78129 -31.87508 -29.78582 -27.86263 -26.45655 -24.32284 -23.00550 -21.33085 -20.47203 -19.27079 -16.82358 -16.53326 -15.94899 -15.55379 -14.85757 -14.50934 -14.12619 -13.56722 -13.36162 -13.26987 -12.98323 -12.54525 -12.40655 -12.30408 -12.06329 -11.73784 -11.43189 -11.21404 -11.05540 -10.77010 -10.73670 -10.64168 -10.14544 -9.81978 -9.79674 -9.63173 -9.22913 -8.53863 -7.94927 -6.04533 -4.02987 3.32520 3.39274 3.43836 3.71496 4.30432 4.45968 4.52302 4.64775 4.90168 4.96167 5.08154 5.10246 5.30039 5.36947 5.39770 5.44625 5.51538 5.66489 5.69288 5.76426 5.79716 5.85741 5.97101 6.04177 6.06504 6.20620 6.24876 6.29995 6.77000 6.88115 7.12142 7.37973 7.59248 7.74767 7.89896 8.53038 8.99462 9.57844 11.08845 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.048041 B = 0.004864 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.694739 B = 5754.728997 C = 6012.652492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.102 3.898 3 C -0.161 4.161 4 O -0.371 6.371 5 C 0.047 3.953 6 C -0.153 4.153 7 C -0.111 4.111 8 H 0.093 0.907 9 C 0.066 3.934 10 N -0.695 5.695 11 C 0.073 3.927 12 C -0.010 4.010 13 C -0.522 4.522 14 H 0.071 0.929 15 C 0.067 3.933 16 N -0.904 5.904 17 Si 0.883 3.117 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.266 1.266 21 H 0.074 0.926 22 H 0.058 0.942 23 H 0.066 0.934 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.030 0.970 32 H 0.075 0.925 33 H 0.333 0.667 34 H 0.064 0.936 35 H 0.021 0.979 36 H 0.012 0.988 37 H 0.021 0.979 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.947 9.278 -17.076 20.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.062 3.938 3 C -0.218 4.218 4 O -0.291 6.291 5 C -0.030 4.030 6 C -0.191 4.191 7 C -0.130 4.130 8 H 0.111 0.889 9 C -0.063 4.063 10 N -0.326 5.326 11 C -0.055 4.055 12 C -0.048 4.048 13 C -0.560 4.560 14 H 0.089 0.911 15 C -0.134 4.134 16 N -0.543 5.543 17 Si 0.710 3.290 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.190 1.190 21 H 0.092 0.908 22 H 0.077 0.923 23 H 0.085 0.915 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.108 0.892 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.048 0.952 32 H 0.094 0.906 33 H 0.150 0.850 34 H 0.083 0.917 35 H 0.040 0.960 36 H 0.031 0.969 37 H 0.039 0.961 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.800 9.784 -16.765 20.920 hybrid contribution 0.759 -0.951 0.159 1.227 sum 8.559 8.833 -16.606 20.665 Atomic orbital electron populations 1.22013 0.93120 1.03035 1.02288 1.22107 0.94908 0.91816 0.84970 1.22234 1.01333 0.95806 1.02472 1.88888 1.39471 1.67283 1.33432 1.23497 0.87814 0.96117 0.95541 1.23230 1.00721 0.98928 0.96201 1.22627 0.97474 0.97089 0.95823 0.88905 1.22125 0.95452 0.98519 0.90239 1.60641 1.15747 1.38164 1.18062 1.21952 0.92049 0.96908 0.94583 1.19544 0.97012 0.95437 0.92766 1.21076 0.94324 1.36677 1.03935 0.91124 1.25006 0.97134 0.94834 0.96435 1.69914 1.31719 1.38936 1.13739 0.86730 0.85661 0.77552 0.79030 1.20229 1.21491 1.19034 0.90753 0.92314 0.91541 0.92452 0.92075 0.91343 0.89245 0.92404 0.89975 0.90587 0.95238 0.90644 0.84973 0.91749 0.96031 0.96925 0.96106 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 7.69 37.15 0.29 -1.29 16 2 C 0.10 1.13 1.19 -90.05 -0.11 1.02 16 3 C -0.16 -1.55 8.61 37.15 0.32 -1.23 16 4 O -0.37 -4.58 10.86 -35.23 -0.38 -4.96 16 5 C 0.05 0.47 7.66 38.21 0.29 0.76 16 6 C -0.15 -1.62 6.04 -24.73 -0.15 -1.77 16 7 C -0.11 -1.29 2.91 -89.09 -0.26 -1.55 16 8 H 0.09 1.10 7.70 -51.93 -0.40 0.70 16 9 C 0.07 0.91 3.87 -3.82 -0.01 0.89 16 10 N -0.70 -11.60 6.50 -113.78 -0.74 -12.34 16 11 C 0.07 1.49 5.62 -3.82 -0.02 1.47 16 12 C -0.01 -0.24 4.30 -27.89 -0.12 -0.36 16 13 C -0.52 -15.05 9.66 -34.44 -0.33 -15.38 16 14 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 15 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 16 N -0.90 -28.10 13.96 55.43 0.77 -27.33 16 17 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 21 H 0.07 0.74 6.72 -51.93 -0.35 0.39 16 22 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.07 0.75 6.86 -51.93 -0.36 0.40 16 24 H 0.06 0.53 8.11 -51.93 -0.42 0.11 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.51 8.11 -51.93 -0.42 0.09 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.86 7.77 -51.93 -0.40 0.45 16 31 H 0.03 0.42 6.99 -51.93 -0.36 0.05 16 32 H 0.08 1.03 6.41 -51.93 -0.33 0.69 16 33 H 0.33 5.29 8.10 -39.29 -0.32 4.97 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 37 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 38 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 297.39 15.07 4.48 4.48 Total: -1.00 -30.96 297.39 -7.42 -38.38 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -6.68 Total: 0.02 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: -0.20 Total: -15.56 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.03 Total: -39.67 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: -0.38 Total: -4.96 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.96 -7.42 -38.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693167722.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.345 kcal (2) G-P(sol) polarization free energy of solvation -30.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds