Wall clock time and date at job start Mon Mar 30 2020 02:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.99286 * 2 1 4 4 O 1.43748 * 109.87610 * 238.91973 * 2 1 3 5 5 C 1.44385 * 106.97279 * 214.05995 * 4 2 1 6 6 C 1.54991 * 103.49171 * 40.06030 * 5 4 2 7 7 C 1.54097 * 109.88428 * 121.08775 * 2 1 3 8 8 H 1.08994 * 110.49002 * 240.26697 * 7 2 1 9 9 C 1.53004 * 110.48306 * 2.77471 * 7 2 1 10 10 N 1.46901 * 109.46916 * 185.00014 * 9 7 2 11 11 C 1.46905 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47039 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47393 * 180.02562 * 12 11 10 14 14 H 1.08010 * 119.99765 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00736 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00590 * 179.97438 * 15 13 12 17 17 Si 1.86807 * 119.99710 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47209 * 89.99893 * 17 15 13 19 19 H 1.48500 * 109.47295 * 209.99804 * 17 15 13 20 20 H 1.48503 * 109.47210 * 329.99849 * 17 15 13 21 21 H 1.08998 * 109.47004 * 298.91081 * 1 2 3 22 22 H 1.09002 * 109.47189 * 58.91593 * 1 2 3 23 23 H 1.09004 * 109.47208 * 178.91471 * 1 2 3 24 24 H 1.08997 * 109.47806 * 181.08878 * 3 2 1 25 25 H 1.09003 * 109.47155 * 301.08993 * 3 2 1 26 26 H 1.09000 * 109.47178 * 61.08093 * 3 2 1 27 27 H 1.09001 * 110.61653 * 158.55898 * 5 4 2 28 28 H 1.09000 * 110.61691 * 281.55676 * 5 4 2 29 29 H 1.08997 * 110.91224 * 204.77708 * 6 5 4 30 30 H 1.09003 * 110.90927 * 81.17038 * 6 5 4 31 31 H 1.09004 * 109.46889 * 65.00395 * 9 7 2 32 32 H 1.08995 * 109.47384 * 305.00035 * 9 7 2 33 33 H 1.00901 * 111.00067 * 303.95263 * 10 9 7 34 34 H 1.09001 * 109.46798 * 300.00327 * 11 10 9 35 35 H 1.08998 * 109.46961 * 60.00043 * 11 10 9 36 36 H 1.09001 * 109.47393 * 299.99719 * 12 11 10 37 37 H 1.08998 * 109.47408 * 60.00073 * 12 11 10 38 38 H 0.97002 * 120.00416 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0530 1.4377 0.0000 4 8 2.0187 -0.6979 -1.1578 5 6 3.2379 -1.3641 -0.7649 6 6 2.9196 -1.8914 0.6574 7 6 2.0540 -0.7482 1.2410 8 1 2.6600 -0.0853 1.8585 9 6 0.8899 -1.3191 2.0533 10 7 1.4050 -1.9224 3.2897 11 6 0.3128 -2.4827 4.0968 12 6 0.8869 -3.1000 5.3735 13 6 -0.2333 -3.6754 6.2011 14 1 -1.2530 -3.6072 5.8516 15 6 0.0433 -4.2889 7.4044 16 7 -0.9344 -4.7906 8.1269 17 14 1.8068 -4.4063 8.0093 18 1 2.1299 -3.2105 8.8283 19 1 1.9663 -5.6299 8.8356 20 1 2.7262 -4.4720 6.8450 21 1 -0.3633 0.4968 0.8996 22 1 -0.3634 0.5306 -0.8801 23 1 -0.3634 -1.0275 -0.0195 24 1 3.1428 1.4280 -0.0195 25 1 1.6786 1.9606 -0.8801 26 1 1.7103 1.9491 0.8995 27 1 3.4584 -2.1907 -1.4403 28 1 4.0684 -0.6588 -0.7358 29 1 3.8332 -2.0225 1.2372 30 1 2.3539 -2.8220 0.6097 31 1 0.3748 -2.0788 1.4655 32 1 0.1936 -0.5184 2.3024 33 1 2.1011 -2.6241 3.0870 34 1 -0.3879 -1.6903 4.3600 35 1 -0.2060 -3.2506 3.5229 36 1 1.5878 -3.8924 5.1106 37 1 1.4054 -2.3319 5.9472 38 1 -0.7397 -5.2225 8.9733 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693167722.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:25 Heat of formation + Delta-G solvation = -84.153327 kcal Electronic energy + Delta-G solvation = -16104.005144 eV Core-core repulsion = 13558.786775 eV Total energy + Delta-G solvation = -2545.218369 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.13926 -37.61159 -35.29286 -34.19068 -33.08395 -31.38039 -28.83854 -27.54736 -25.81249 -24.23012 -22.37423 -22.16993 -20.23530 -18.96108 -17.53808 -16.80477 -16.79110 -16.35531 -15.78100 -15.41357 -15.08126 -14.82870 -14.42051 -14.11542 -14.03532 -13.52945 -13.28668 -13.14355 -12.93348 -12.85556 -12.54974 -12.17775 -12.02180 -11.96550 -11.74168 -11.57792 -11.54341 -11.42088 -11.29790 -10.77435 -10.57245 -9.33976 -8.30292 -6.35308 1.37860 1.38982 1.51635 2.36738 2.90221 3.05391 3.19245 3.59478 3.75246 3.99022 4.11577 4.20794 4.27986 4.37260 4.43302 4.52553 4.58905 4.67081 4.70211 4.79484 4.86679 4.93310 4.94672 4.95926 5.01051 5.08616 5.19202 5.27754 5.30318 5.37972 5.48263 5.62292 6.06099 6.11523 6.24712 6.51564 6.73422 7.29857 8.86492 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.048041 B = 0.004864 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.694739 B = 5754.728997 C = 6012.652492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.100 3.900 3 C -0.158 4.158 4 O -0.391 6.391 5 C 0.046 3.954 6 C -0.153 4.153 7 C -0.106 4.106 8 H 0.095 0.905 9 C 0.069 3.931 10 N -0.692 5.692 11 C 0.086 3.914 12 C -0.004 4.004 13 C -0.536 4.536 14 H 0.031 0.969 15 C 0.005 3.995 16 N -0.952 5.952 17 Si 0.956 3.044 18 H -0.267 1.267 19 H -0.284 1.284 20 H -0.246 1.246 21 H 0.079 0.921 22 H 0.064 0.936 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.101 0.899 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.066 0.934 31 H 0.026 0.974 32 H 0.076 0.924 33 H 0.340 0.660 34 H 0.056 0.944 35 H 0.014 0.986 36 H 0.019 0.981 37 H 0.023 0.977 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.299 10.038 -17.818 22.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.060 3.940 3 C -0.216 4.216 4 O -0.311 6.311 5 C -0.031 4.031 6 C -0.190 4.190 7 C -0.125 4.125 8 H 0.113 0.887 9 C -0.060 4.060 10 N -0.323 5.323 11 C -0.043 4.043 12 C -0.042 4.042 13 C -0.574 4.574 14 H 0.049 0.951 15 C -0.192 4.192 16 N -0.592 5.592 17 Si 0.779 3.221 18 H -0.192 1.192 19 H -0.210 1.210 20 H -0.169 1.169 21 H 0.098 0.902 22 H 0.083 0.917 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.119 0.881 28 H 0.090 0.910 29 H 0.112 0.888 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.094 0.906 33 H 0.158 0.842 34 H 0.075 0.925 35 H 0.032 0.968 36 H 0.038 0.962 37 H 0.041 0.959 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.157 10.555 -17.536 22.849 hybrid contribution -0.072 -1.184 0.342 1.235 sum 10.085 9.371 -17.194 22.027 Atomic orbital electron populations 1.22028 0.93226 1.02459 1.02873 1.22173 0.94959 0.92509 0.84364 1.22210 1.01670 0.94722 1.02962 1.88870 1.40512 1.67704 1.34063 1.23643 0.87433 0.96731 0.95249 1.23234 1.00862 0.98075 0.96858 1.22563 0.96666 0.97532 0.95771 0.88652 1.22163 0.96472 0.98238 0.89140 1.60552 1.14563 1.37846 1.19315 1.21628 0.92705 0.96346 0.93644 1.19432 0.95479 0.95512 0.93745 1.21420 0.94110 1.37022 1.04883 0.95112 1.26015 1.02286 0.94284 0.96573 1.70066 1.34521 1.40146 1.14476 0.85579 0.79586 0.77910 0.79047 1.19207 1.20956 1.16936 0.90205 0.91740 0.92678 0.91896 0.91767 0.90708 0.88054 0.90998 0.88793 0.91484 0.95611 0.90589 0.84176 0.92528 0.96782 0.96218 0.95878 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 7.69 71.98 0.55 -2.45 16 2 C 0.10 2.03 1.19 -10.43 -0.01 2.02 16 3 C -0.16 -2.69 8.61 71.98 0.62 -2.07 16 4 O -0.39 -8.94 10.86 -148.98 -1.62 -10.56 16 5 C 0.05 0.80 7.66 72.66 0.56 1.36 16 6 C -0.15 -2.90 6.04 31.89 0.19 -2.71 16 7 C -0.11 -2.26 2.91 -9.80 -0.03 -2.28 16 8 H 0.10 2.01 7.70 -2.39 -0.02 1.99 16 9 C 0.07 1.79 3.87 86.30 0.33 2.13 16 10 N -0.69 -21.90 6.50 -513.88 -3.34 -25.25 16 11 C 0.09 3.44 5.62 86.30 0.49 3.92 16 12 C 0.00 -0.18 4.30 29.85 0.13 -0.06 16 13 C -0.54 -31.39 9.66 25.60 0.25 -31.15 16 14 H 0.03 1.98 7.99 -2.91 -0.02 1.95 16 15 C 0.01 0.31 5.47 84.65 0.46 0.77 16 16 N -0.95 -60.23 13.96 21.44 0.30 -59.93 16 17 Si 0.96 44.61 27.47 68.60 1.88 46.49 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 19 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.25 -10.61 6.54 99.48 0.65 -9.96 16 21 H 0.08 1.49 6.72 -2.39 -0.02 1.47 16 22 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.05 1.22 6.86 -2.39 -0.02 1.20 16 24 H 0.06 0.99 8.11 -2.39 -0.02 0.97 16 25 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.10 1.51 8.14 -2.39 -0.02 1.50 16 28 H 0.07 1.07 8.11 -2.39 -0.02 1.05 16 29 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.07 1.40 7.77 -2.39 -0.02 1.38 16 31 H 0.03 0.70 6.99 -2.39 -0.02 0.69 16 32 H 0.08 1.98 6.41 -2.39 -0.02 1.96 16 33 H 0.34 10.05 8.10 -89.69 -0.73 9.32 16 34 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.02 0.90 7.20 -2.39 -0.02 0.89 16 37 H 0.02 1.08 7.57 -2.39 -0.02 1.07 16 38 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -66.11 297.39 1.00 -65.12 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.23 Total: 14.64 kcal Atomic # 6 Polarization: -34.05 SS G_CDS: 3.54 Total: -30.51 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -3.04 Total: -85.18 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -1.62 Total: -10.56 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.88 Total: 46.49 kcal Total: -66.11 1.00 -65.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693167722.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.037 kcal (2) G-P(sol) polarization free energy of solvation -66.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds