Wall clock time and date at job start Mon Mar 30 2020 02:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99857 * 2 1 4 4 C 1.53000 * 115.56276 * 34.32150 * 3 2 1 5 5 C 1.52995 * 117.49990 * 248.62517 * 3 2 1 6 6 C 1.53006 * 117.49690 * 179.97438 * 3 2 1 7 7 H 1.08993 * 117.51775 * 0.02562 * 6 3 2 8 8 N 1.46893 * 117.50066 * 214.98346 * 6 3 2 9 9 C 1.46896 * 111.00308 * 154.99233 * 8 6 3 10 10 C 1.52996 * 109.47438 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 8 12 12 C 1.53006 * 109.47127 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47184 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99819 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00046 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00192 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47454 * 59.99696 * 17 15 13 19 19 H 1.48506 * 109.47297 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47261 * 299.99689 * 17 15 13 21 21 H 1.08996 * 109.47417 * 59.99225 * 1 2 3 22 22 H 1.08994 * 109.47477 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46861 * 299.99300 * 1 2 3 24 24 H 1.09003 * 109.47169 * 205.68709 * 4 3 2 25 25 H 1.09008 * 109.46744 * 325.67839 * 4 3 2 26 26 H 1.09000 * 109.47848 * 85.67931 * 4 3 2 27 27 H 1.09004 * 117.49673 * 145.02808 * 5 3 2 28 28 H 1.08999 * 117.52151 * 359.97438 * 5 3 2 29 29 H 1.00897 * 111.00315 * 31.03170 * 8 6 3 30 30 H 1.09000 * 109.47585 * 59.99341 * 9 8 6 31 31 H 1.09001 * 109.46551 * 299.99826 * 9 8 6 32 32 H 1.08996 * 109.47452 * 59.99844 * 10 9 8 33 33 H 1.09001 * 109.46997 * 299.99418 * 10 9 8 34 34 H 1.09001 * 109.47502 * 60.00153 * 11 10 9 35 35 H 1.09001 * 109.47289 * 299.99950 * 11 10 9 36 36 H 1.09001 * 109.47002 * 299.99574 * 12 11 10 37 37 H 1.08993 * 109.46955 * 60.00011 * 12 11 10 38 38 H 0.96996 * 120.00505 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.2373 2.3722 0.7782 5 6 2.7494 1.7497 -1.2637 6 6 3.5374 1.3989 0.0006 7 1 4.0990 0.4648 0.0006 8 7 4.1490 2.5059 0.7477 9 6 5.5174 2.1689 1.1620 10 6 6.1197 3.3432 1.9361 11 6 7.5448 2.9919 2.3681 12 6 8.1474 4.1665 3.1417 13 6 9.5512 3.8207 3.5667 14 1 9.9715 2.8592 3.3110 15 6 10.2988 4.7314 4.2828 16 7 9.7869 5.9020 4.5945 17 14 12.0386 4.3025 4.8102 18 1 12.8660 4.0250 3.6087 19 1 12.6236 5.4426 5.5609 20 1 12.0098 3.0992 5.6800 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5137 0.8901 24 1 1.4656 3.3567 0.3698 25 1 0.1675 2.1819 0.6909 26 1 1.5279 2.3381 1.8282 27 1 2.6851 2.8020 -1.5407 28 1 2.7930 1.0463 -2.0952 29 1 3.5831 2.7618 1.5428 30 1 6.1244 1.9651 0.2799 31 1 5.4965 1.2858 1.8006 32 1 5.5127 3.5465 2.8182 33 1 6.1406 4.2266 1.2978 34 1 8.1522 2.7883 1.4862 35 1 7.5236 2.1086 3.0064 36 1 8.1687 5.0495 2.5029 37 1 7.5402 4.3704 4.0235 38 1 10.3126 6.5426 5.0986 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694434776.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:56 Heat of formation + Delta-G solvation = -37.103011 kcal Electronic energy + Delta-G solvation = -15260.510079 eV Core-core repulsion = 12717.331965 eV Total energy + Delta-G solvation = -2543.178114 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.48460 -36.71135 -34.96982 -33.12302 -31.40982 -29.04601 -27.84814 -26.75386 -24.32236 -21.63211 -21.39685 -20.33607 -19.74114 -17.07403 -16.32116 -16.04445 -15.40738 -15.14990 -14.64352 -14.44789 -14.08527 -13.67534 -13.14856 -12.66563 -12.52661 -12.40434 -12.08197 -11.69240 -11.55849 -11.51375 -11.12438 -10.95785 -10.66956 -10.51954 -10.42714 -10.39253 -9.60683 -9.38860 -9.19430 -8.97691 -8.36235 -8.30169 -5.95738 -3.97977 3.16970 3.35808 3.39847 3.42595 3.63419 4.14030 4.45590 4.49704 4.71737 4.92387 5.04069 5.10277 5.25786 5.32673 5.39576 5.41999 5.47021 5.52491 5.58751 5.69610 5.79683 5.82503 5.91621 6.17359 6.28685 6.52295 6.83993 6.91656 6.98745 7.06935 7.24171 7.34112 7.72981 7.89153 8.05373 8.48226 9.09377 9.65748 11.15644 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.073064 B = 0.003390 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.131113 B = 8258.285107 C = 8357.110781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.021 3.979 4 C -0.144 4.144 5 C -0.179 4.179 6 C 0.045 3.955 7 H 0.105 0.895 8 N -0.656 5.656 9 C 0.059 3.941 10 C -0.116 4.116 11 C -0.109 4.109 12 C 0.021 3.979 13 C -0.521 4.521 14 H 0.054 0.946 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 H 0.043 0.957 22 H 0.085 0.915 23 H 0.047 0.953 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.342 0.658 30 H 0.072 0.928 31 H 0.030 0.970 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.048 0.952 35 H 0.045 0.955 36 H 0.016 0.984 37 H 0.014 0.986 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.353 -8.770 -9.182 22.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.274 6.274 3 C -0.020 4.020 4 C -0.201 4.201 5 C -0.218 4.218 6 C -0.066 4.066 7 H 0.123 0.877 8 N -0.288 5.288 9 C -0.069 4.069 10 C -0.154 4.154 11 C -0.147 4.147 12 C -0.016 4.016 13 C -0.559 4.559 14 H 0.072 0.928 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 H 0.061 0.939 22 H 0.103 0.897 23 H 0.065 0.935 24 H 0.098 0.902 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.123 0.877 28 H 0.116 0.884 29 H 0.163 0.837 30 H 0.091 0.909 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.034 0.966 37 H 0.033 0.967 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.991 -8.429 -9.632 22.080 hybrid contribution 0.615 -0.642 1.002 1.340 sum -17.376 -9.072 -8.630 21.417 Atomic orbital electron populations 1.22783 0.81154 1.02549 1.00273 1.87891 1.19821 1.25183 1.94504 1.22383 0.93233 0.85042 1.01337 1.21719 1.00025 0.98013 1.00361 1.23915 1.02902 1.02626 0.92312 1.22746 0.89896 0.94825 0.99146 0.87748 1.60410 1.03825 1.35484 1.29058 1.22170 0.87976 0.97723 0.99032 1.21645 0.97624 0.97246 0.98869 1.21592 0.92941 1.00558 0.99625 1.19086 0.95052 0.92599 0.94827 1.21262 0.99168 1.01066 1.34433 0.92808 1.25030 0.98268 0.95075 0.96144 1.69954 1.37237 1.06738 1.39688 0.86668 0.84838 0.77812 0.78728 1.20254 1.21303 1.20282 0.93880 0.89661 0.93452 0.90212 0.91258 0.91484 0.87743 0.88421 0.83744 0.90911 0.95153 0.92725 0.91558 0.93362 0.93620 0.96595 0.96743 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.05 101.05 1.02 1.24 16 2 O -0.36 -4.09 10.95 -35.23 -0.39 -4.48 16 3 C 0.02 0.23 3.03 -90.62 -0.27 -0.05 16 4 C -0.14 -1.27 8.43 37.16 0.31 -0.96 16 5 C -0.18 -1.91 10.05 -26.70 -0.27 -2.18 16 6 C 0.05 0.54 6.19 -67.68 -0.42 0.12 16 7 H 0.10 1.31 7.90 -51.93 -0.41 0.90 16 8 N -0.66 -8.49 6.56 -106.70 -0.70 -9.19 16 9 C 0.06 0.86 5.54 -3.83 -0.02 0.84 16 10 C -0.12 -2.00 5.47 -26.73 -0.15 -2.15 16 11 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 12 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 13 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 14 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -27.47 13.29 55.43 0.74 -26.74 16 17 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 22 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.05 0.32 6.47 -51.93 -0.34 -0.01 16 24 H 0.08 0.69 7.90 -51.93 -0.41 0.28 16 25 H 0.07 0.51 5.78 -51.92 -0.30 0.21 16 26 H 0.07 0.59 7.58 -51.93 -0.39 0.19 16 27 H 0.10 1.09 8.05 -51.93 -0.42 0.67 16 28 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.34 4.13 7.19 -39.29 -0.28 3.84 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 311.60 15.07 4.70 4.70 Total: -1.00 -31.12 311.60 -7.91 -39.02 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -6.74 Total: -1.29 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -0.49 Total: -19.02 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.04 Total: -35.93 kcal Atomic # 8 Polarization: -4.09 SS G_CDS: -0.39 Total: -4.48 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.12 -7.91 -39.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694434776.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.918 kcal (2) G-P(sol) polarization free energy of solvation -31.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds