Wall clock time and date at job start Mon Mar 30 2020 02:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99857 * 2 1 4 4 C 1.53000 * 115.56276 * 34.32150 * 3 2 1 5 5 C 1.52995 * 117.49990 * 248.62517 * 3 2 1 6 6 C 1.53006 * 117.49690 * 179.97438 * 3 2 1 7 7 H 1.08993 * 117.51775 * 0.02562 * 6 3 2 8 8 N 1.46893 * 117.50066 * 214.98346 * 6 3 2 9 9 C 1.46896 * 111.00308 * 154.99233 * 8 6 3 10 10 C 1.52996 * 109.47438 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 8 12 12 C 1.53006 * 109.47127 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47184 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99819 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00046 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00192 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47454 * 59.99696 * 17 15 13 19 19 H 1.48506 * 109.47297 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47261 * 299.99689 * 17 15 13 21 21 H 1.08996 * 109.47417 * 59.99225 * 1 2 3 22 22 H 1.08994 * 109.47477 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46861 * 299.99300 * 1 2 3 24 24 H 1.09003 * 109.47169 * 205.68709 * 4 3 2 25 25 H 1.09008 * 109.46744 * 325.67839 * 4 3 2 26 26 H 1.09000 * 109.47848 * 85.67931 * 4 3 2 27 27 H 1.09004 * 117.49673 * 145.02808 * 5 3 2 28 28 H 1.08999 * 117.52151 * 359.97438 * 5 3 2 29 29 H 1.00897 * 111.00315 * 31.03170 * 8 6 3 30 30 H 1.09000 * 109.47585 * 59.99341 * 9 8 6 31 31 H 1.09001 * 109.46551 * 299.99826 * 9 8 6 32 32 H 1.08996 * 109.47452 * 59.99844 * 10 9 8 33 33 H 1.09001 * 109.46997 * 299.99418 * 10 9 8 34 34 H 1.09001 * 109.47502 * 60.00153 * 11 10 9 35 35 H 1.09001 * 109.47289 * 299.99950 * 11 10 9 36 36 H 1.09001 * 109.47002 * 299.99574 * 12 11 10 37 37 H 1.08993 * 109.46955 * 60.00011 * 12 11 10 38 38 H 0.96996 * 120.00505 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.2373 2.3722 0.7782 5 6 2.7494 1.7497 -1.2637 6 6 3.5374 1.3989 0.0006 7 1 4.0990 0.4648 0.0006 8 7 4.1490 2.5059 0.7477 9 6 5.5174 2.1689 1.1620 10 6 6.1197 3.3432 1.9361 11 6 7.5448 2.9919 2.3681 12 6 8.1474 4.1665 3.1417 13 6 9.5512 3.8207 3.5667 14 1 9.9715 2.8592 3.3110 15 6 10.2988 4.7314 4.2828 16 7 9.7869 5.9020 4.5945 17 14 12.0386 4.3025 4.8102 18 1 12.8660 4.0250 3.6087 19 1 12.6236 5.4426 5.5609 20 1 12.0098 3.0992 5.6800 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5137 0.8901 24 1 1.4656 3.3567 0.3698 25 1 0.1675 2.1819 0.6909 26 1 1.5279 2.3381 1.8282 27 1 2.6851 2.8020 -1.5407 28 1 2.7930 1.0463 -2.0952 29 1 3.5831 2.7618 1.5428 30 1 6.1244 1.9651 0.2799 31 1 5.4965 1.2858 1.8006 32 1 5.5127 3.5465 2.8182 33 1 6.1406 4.2266 1.2978 34 1 8.1522 2.7883 1.4862 35 1 7.5236 2.1086 3.0064 36 1 8.1687 5.0495 2.5029 37 1 7.5402 4.3704 4.0235 38 1 10.3126 6.5426 5.0986 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694434776.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:55 Heat of formation + Delta-G solvation = -57.417474 kcal Electronic energy + Delta-G solvation = -15261.390980 eV Core-core repulsion = 12717.331965 eV Total energy + Delta-G solvation = -2544.059015 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.31752 -37.79089 -36.39553 -34.87882 -33.04595 -29.85444 -29.47111 -27.43923 -26.14399 -23.11547 -22.44633 -21.75141 -20.84842 -18.45087 -17.86971 -17.14860 -16.53163 -16.39982 -16.07242 -15.57037 -15.30843 -14.69459 -14.38506 -14.17797 -13.75550 -13.50331 -13.36463 -13.05714 -12.93609 -12.74108 -12.42475 -12.29721 -12.23620 -12.11135 -11.89545 -11.42495 -11.31037 -11.28593 -11.03880 -10.54529 -10.11102 -9.36326 -8.19514 -6.31061 1.39715 1.43163 1.51111 2.37037 2.41823 2.77246 3.13100 3.21735 3.66857 3.96319 4.01330 4.11426 4.24727 4.37768 4.48934 4.53415 4.55143 4.64919 4.71762 4.78516 4.81578 4.87158 4.89570 4.92714 5.03341 5.14532 5.23439 5.28586 5.35371 5.55138 5.78479 5.87230 5.99789 6.22816 6.26311 6.37069 6.86378 7.38198 8.92234 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.073064 B = 0.003390 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.131113 B = 8258.285107 C = 8357.110781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.380 6.380 3 C 0.028 3.972 4 C -0.143 4.143 5 C -0.173 4.173 6 C 0.026 3.974 7 H 0.097 0.903 8 N -0.656 5.656 9 C 0.071 3.929 10 C -0.105 4.105 11 C -0.098 4.098 12 C 0.023 3.977 13 C -0.547 4.547 14 H 0.060 0.940 15 C -0.002 4.002 16 N -0.934 5.934 17 Si 0.966 3.034 18 H -0.267 1.267 19 H -0.282 1.282 20 H -0.266 1.266 21 H 0.052 0.948 22 H 0.098 0.902 23 H 0.057 0.943 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.108 0.892 28 H 0.102 0.898 29 H 0.347 0.653 30 H 0.073 0.927 31 H 0.034 0.966 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.050 0.950 36 H -0.010 1.010 37 H -0.010 1.010 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.730 -9.772 -9.496 23.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.299 6.299 3 C -0.013 4.013 4 C -0.200 4.200 5 C -0.212 4.212 6 C -0.084 4.084 7 H 0.115 0.885 8 N -0.288 5.288 9 C -0.058 4.058 10 C -0.143 4.143 11 C -0.136 4.136 12 C -0.014 4.014 13 C -0.585 4.585 14 H 0.078 0.922 15 C -0.200 4.200 16 N -0.575 5.575 17 Si 0.790 3.210 18 H -0.191 1.191 19 H -0.207 1.207 20 H -0.191 1.191 21 H 0.071 0.929 22 H 0.117 0.883 23 H 0.076 0.924 24 H 0.100 0.900 25 H 0.104 0.896 26 H 0.085 0.915 27 H 0.126 0.874 28 H 0.120 0.880 29 H 0.167 0.833 30 H 0.091 0.909 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.008 0.992 37 H 0.009 0.991 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.388 -9.445 -9.957 22.945 hybrid contribution 0.665 -0.332 1.089 1.319 sum -17.722 -9.778 -8.868 22.098 Atomic orbital electron populations 1.23002 0.79334 1.03845 1.01214 1.87851 1.21868 1.25589 1.94618 1.22447 0.92384 0.85381 1.01129 1.21749 1.00844 0.97419 1.00017 1.23934 1.02141 1.02951 0.92169 1.22738 0.91070 0.94323 1.00312 0.88509 1.60351 1.03155 1.36045 1.29260 1.21932 0.88926 0.96289 0.98627 1.21457 0.95535 0.98144 0.99146 1.21401 0.94928 0.98251 0.98989 1.19014 0.94504 0.93826 0.94028 1.21733 1.00469 1.01501 1.34804 0.92221 1.26015 1.03131 0.94829 0.96016 1.70091 1.39175 1.07867 1.40332 0.85493 0.78944 0.77906 0.78659 1.19149 1.20732 1.19119 0.92947 0.88334 0.92435 0.90009 0.89591 0.91467 0.87367 0.87981 0.83255 0.90892 0.94753 0.92608 0.92318 0.93050 0.93125 0.99171 0.99127 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.05 113.37 1.14 1.43 16 2 O -0.38 -8.16 10.95 -148.98 -1.63 -9.79 16 3 C 0.03 0.55 3.03 -10.79 -0.03 0.52 16 4 C -0.14 -2.25 8.43 71.98 0.61 -1.64 16 5 C -0.17 -3.47 10.05 30.61 0.31 -3.16 16 6 C 0.03 0.61 6.19 44.94 0.28 0.89 16 7 H 0.10 2.36 7.90 -2.39 -0.02 2.35 16 8 N -0.66 -16.26 6.56 -491.50 -3.22 -19.49 16 9 C 0.07 2.00 5.54 86.30 0.48 2.48 16 10 C -0.10 -3.58 5.47 30.59 0.17 -3.42 16 11 C -0.10 -4.08 5.15 30.60 0.16 -3.93 16 12 C 0.02 1.27 4.97 29.85 0.15 1.42 16 13 C -0.55 -32.02 9.11 25.60 0.23 -31.79 16 14 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 15 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 16 N -0.93 -58.06 13.29 21.45 0.28 -57.78 16 17 Si 0.97 44.97 29.54 68.60 2.03 46.99 16 18 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 22 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.06 0.65 6.47 -2.39 -0.02 0.64 16 24 H 0.08 1.26 7.90 -2.39 -0.02 1.24 16 25 H 0.09 1.05 5.78 -2.38 -0.01 1.04 16 26 H 0.07 1.06 7.58 -2.39 -0.02 1.04 16 27 H 0.11 2.08 8.05 -2.38 -0.02 2.06 16 28 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.35 7.95 7.19 -89.70 -0.65 7.30 16 30 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 36 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 37 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 38 H 0.26 15.37 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -66.24 311.60 1.76 -64.48 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 0.36 Total: 12.47 kcal Atomic # 6 Polarization: -40.82 SS G_CDS: 3.95 Total: -36.88 kcal Atomic # 7 Polarization: -74.33 SS G_CDS: -2.94 Total: -77.27 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -1.63 Total: -9.79 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -66.24 1.76 -64.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694434776.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.058 kcal (2) G-P(sol) polarization free energy of solvation -66.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds