Wall clock time and date at job start Mon Mar 30 2020 02:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46897 * 110.99624 * 2 1 4 4 C 1.50696 * 109.47691 * 293.95465 * 3 2 1 5 5 H 1.08004 * 119.99721 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00729 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99476 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00559 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46743 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47289 * 119.99764 * 8 6 4 11 11 H 1.48493 * 109.47134 * 240.00192 * 8 6 4 12 12 C 1.46894 * 111.00366 * 123.95643 * 2 1 3 13 13 H 1.09002 * 109.47275 * 39.53131 * 12 2 1 14 14 C 1.53001 * 109.47066 * 279.52795 * 12 2 1 15 15 C 1.53004 * 109.46917 * 180.02562 * 14 12 2 16 16 C 1.53002 * 109.47251 * 59.99821 * 15 14 12 17 17 C 1.52998 * 109.46979 * 299.99807 * 16 15 14 18 18 C 1.53002 * 109.47076 * 159.52632 * 12 2 1 19 19 C 1.53001 * 109.47306 * 300.00016 * 18 12 2 20 20 O 1.42901 * 109.47047 * 60.00214 * 18 12 2 21 21 H 1.08995 * 109.47774 * 65.51873 * 1 2 3 22 22 H 1.09008 * 109.46907 * 185.51882 * 1 2 3 23 23 H 1.09001 * 109.47468 * 305.51336 * 1 2 3 24 24 H 1.09006 * 109.47372 * 173.95569 * 3 2 1 25 25 H 1.09004 * 109.47307 * 53.95800 * 3 2 1 26 26 H 0.97000 * 120.00337 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.46863 * 299.99538 * 14 12 2 28 28 H 1.08994 * 109.47440 * 59.99936 * 14 12 2 29 29 H 1.09004 * 109.46666 * 299.99745 * 15 14 12 30 30 H 1.09000 * 109.47017 * 180.02562 * 15 14 12 31 31 H 1.09002 * 109.46929 * 179.97438 * 16 15 14 32 32 H 1.09002 * 109.46661 * 60.00047 * 16 15 14 33 33 H 1.08991 * 109.47438 * 300.00079 * 17 16 15 34 34 H 1.09003 * 109.47135 * 179.97438 * 17 16 15 35 35 H 1.09001 * 109.46865 * 65.06187 * 19 18 12 36 36 H 1.08994 * 109.47454 * 185.06416 * 19 18 12 37 37 H 1.09005 * 109.46645 * 305.06415 * 19 18 12 38 38 H 0.96701 * 113.99759 * 180.02562 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.6368 2.0472 -1.2984 5 1 1.0738 1.5116 -2.0484 6 6 2.0265 3.3496 -1.5284 7 7 2.7117 4.0020 -0.6149 8 14 1.5815 4.1875 -3.1375 9 1 0.8134 3.2451 -3.9903 10 1 0.7539 5.3883 -2.8580 11 1 2.8228 4.5951 -3.8432 12 6 1.9955 -0.7660 1.1375 13 1 1.3858 -1.6567 1.2891 14 6 1.9554 0.1003 2.3980 15 6 2.5044 -0.6974 3.5826 16 6 3.9488 -1.1108 3.2936 17 6 3.9889 -1.9770 2.0331 18 6 3.4399 -1.1799 0.8488 19 6 3.4800 -2.0461 -0.4117 20 8 4.2393 -0.0122 0.6500 21 1 -0.3634 0.4258 -0.9352 22 1 -0.3633 -1.0230 0.0988 23 1 -0.3634 0.5970 0.8365 24 1 3.0796 1.3445 0.1082 25 1 1.5610 1.9273 0.8310 26 1 2.9862 4.9181 -0.7767 27 1 2.5652 0.9909 2.2463 28 1 0.9264 0.3952 2.6037 29 1 1.8949 -1.5882 3.7344 30 1 2.4754 -0.0804 4.4807 31 1 4.3401 -1.6786 4.1378 32 1 4.5582 -0.2198 3.1418 33 1 3.3795 -2.8678 2.1849 34 1 5.0180 -2.2712 1.8269 35 1 3.1743 -1.4504 -1.2718 36 1 4.4938 -2.4150 -0.5670 37 1 2.8002 -2.8902 -0.2943 38 1 5.1691 -0.1995 0.4615 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699721904.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:12 Heat of formation + Delta-G solvation = -57.241931 kcal Electronic energy + Delta-G solvation = -17412.928302 eV Core-core repulsion = 14868.876899 eV Total energy + Delta-G solvation = -2544.051403 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.54303 -35.61003 -34.44642 -32.33113 -30.87038 -29.22640 -27.05945 -26.04984 -24.21059 -22.58711 -20.89457 -20.34568 -18.71778 -16.33766 -15.74344 -15.24570 -14.63935 -14.49661 -14.03155 -13.58464 -13.37306 -13.11749 -12.59684 -12.36107 -12.10492 -11.81812 -11.62077 -11.35800 -11.09143 -10.95785 -10.88759 -10.68861 -10.51533 -10.48071 -10.27101 -9.97691 -9.66623 -9.55230 -9.21508 -8.76115 -8.18748 -6.97973 -5.85475 -3.84009 3.38296 3.45430 3.50239 4.54572 4.76191 4.91160 5.02571 5.20778 5.42183 5.49955 5.52196 5.55897 5.76734 5.81101 5.85748 5.99530 6.00208 6.15787 6.18820 6.23921 6.28373 6.39509 6.45610 6.49620 6.55135 6.75860 6.83311 6.92685 6.99746 7.62017 7.75120 7.97670 8.27285 8.42020 8.60141 8.79065 9.25861 9.77330 11.25089 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034650 B = 0.008286 C = 0.008262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.885319 B = 3378.355469 C = 3388.144139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.530 5.530 3 C 0.180 3.820 4 C -0.501 4.501 5 H 0.057 0.943 6 C 0.053 3.947 7 N -0.897 5.897 8 Si 0.890 3.110 9 H -0.274 1.274 10 H -0.287 1.287 11 H -0.286 1.286 12 C 0.102 3.898 13 H 0.068 0.932 14 C -0.149 4.149 15 C -0.113 4.113 16 C -0.114 4.114 17 C -0.143 4.143 18 C 0.142 3.858 19 C -0.164 4.164 20 O -0.526 6.526 21 H 0.069 0.931 22 H 0.038 0.962 23 H 0.011 0.989 24 H 0.078 0.922 25 H -0.015 1.015 26 H 0.257 0.743 27 H 0.086 0.914 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.041 0.959 37 H 0.051 0.949 38 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.828 -11.643 6.033 13.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.252 5.252 3 C 0.056 3.944 4 C -0.540 4.540 5 H 0.075 0.925 6 C -0.147 4.147 7 N -0.538 5.538 8 Si 0.719 3.281 9 H -0.199 1.199 10 H -0.214 1.214 11 H -0.212 1.212 12 C -0.008 4.008 13 H 0.086 0.914 14 C -0.188 4.188 15 C -0.151 4.151 16 C -0.152 4.152 17 C -0.181 4.181 18 C 0.101 3.899 19 C -0.222 4.222 20 O -0.331 6.331 21 H 0.087 0.913 22 H 0.057 0.943 23 H 0.030 0.970 24 H 0.096 0.904 25 H 0.003 0.997 26 H 0.066 0.934 27 H 0.105 0.895 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 1.473 -11.398 5.716 12.836 hybrid contribution -0.054 0.655 -0.171 0.679 sum 1.419 -10.744 5.544 12.173 Atomic orbital electron populations 1.22214 0.89768 0.98254 1.00953 1.62327 1.05859 1.18909 1.38134 1.20172 0.98370 0.80664 0.95197 1.21305 1.33816 0.96782 1.02081 0.92478 1.24938 0.95725 0.97442 0.96578 1.69985 1.38903 1.11096 1.33793 0.86567 0.78015 0.79351 0.84188 1.19896 1.21370 1.21199 1.21577 0.92944 0.96338 0.89902 0.91397 1.22203 1.00866 1.00802 0.94915 1.21482 0.96041 0.99373 0.98240 1.21437 0.97315 0.99961 0.96442 1.22242 1.00789 0.98749 0.96326 1.21088 0.91305 0.85386 0.92115 1.22311 1.00024 0.99732 1.00125 1.86923 1.22292 1.30402 1.93437 0.91250 0.94280 0.97017 0.90438 0.99707 0.93367 0.89535 0.92970 0.92991 0.92680 0.92975 0.91192 0.91814 0.92175 0.89871 0.93991 0.92998 0.79940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 9.10 60.06 0.55 1.29 16 2 N -0.53 -11.63 3.96 -236.33 -0.94 -12.57 16 3 C 0.18 4.79 3.27 -4.98 -0.02 4.77 16 4 C -0.50 -14.53 8.59 -34.44 -0.30 -14.83 16 5 H 0.06 1.65 7.10 -52.48 -0.37 1.28 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -27.46 13.29 55.43 0.74 -26.73 16 8 Si 0.89 22.33 29.54 -169.99 -5.02 17.31 16 9 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 C 0.10 1.87 1.57 -67.71 -0.11 1.76 16 13 H 0.07 1.14 7.73 -51.93 -0.40 0.74 16 14 C -0.15 -2.72 4.10 -26.73 -0.11 -2.83 16 15 C -0.11 -1.64 5.92 -26.73 -0.16 -1.80 16 16 C -0.11 -1.53 5.78 -26.73 -0.15 -1.69 16 17 C -0.14 -1.88 4.91 -26.76 -0.13 -2.01 16 18 C 0.14 2.32 0.74 -90.64 -0.07 2.25 16 19 C -0.16 -2.54 8.58 37.16 0.32 -2.22 16 20 O -0.53 -9.82 8.44 -35.23 -0.30 -10.12 16 21 H 0.07 1.49 7.02 -51.93 -0.36 1.12 16 22 H 0.04 0.67 7.84 -51.92 -0.41 0.26 16 23 H 0.01 0.24 7.39 -51.93 -0.38 -0.15 16 24 H 0.08 2.19 4.78 -51.93 -0.25 1.94 16 25 H -0.01 -0.43 6.84 -51.93 -0.36 -0.79 16 26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.09 1.88 6.04 -51.93 -0.31 1.57 16 28 H 0.05 0.97 7.38 -51.93 -0.38 0.59 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.04 7.68 -51.93 -0.40 0.64 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 1.55 7.77 -51.93 -0.40 1.14 16 36 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.35 5.20 9.04 45.56 0.41 5.62 16 LS Contribution 286.48 15.07 4.32 4.32 Total: -1.00 -31.31 286.48 -7.19 -38.49 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -5.71 Total: 3.12 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -0.27 Total: -13.82 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: -0.20 Total: -39.30 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: -0.30 Total: -10.12 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.31 -7.19 -38.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699721904.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.748 kcal (2) G-P(sol) polarization free energy of solvation -31.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds