Wall clock time and date at job start Mon Mar 30 2020 02:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46897 * 110.99624 * 2 1 4 4 C 1.50696 * 109.47691 * 293.95465 * 3 2 1 5 5 H 1.08004 * 119.99721 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00729 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99476 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00559 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46743 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47289 * 119.99764 * 8 6 4 11 11 H 1.48493 * 109.47134 * 240.00192 * 8 6 4 12 12 C 1.46894 * 111.00366 * 123.95643 * 2 1 3 13 13 H 1.09002 * 109.47275 * 39.53131 * 12 2 1 14 14 C 1.53001 * 109.47066 * 279.52795 * 12 2 1 15 15 C 1.53004 * 109.46917 * 180.02562 * 14 12 2 16 16 C 1.53002 * 109.47251 * 59.99821 * 15 14 12 17 17 C 1.52998 * 109.46979 * 299.99807 * 16 15 14 18 18 C 1.53002 * 109.47076 * 159.52632 * 12 2 1 19 19 C 1.53001 * 109.47306 * 300.00016 * 18 12 2 20 20 O 1.42901 * 109.47047 * 60.00214 * 18 12 2 21 21 H 1.08995 * 109.47774 * 65.51873 * 1 2 3 22 22 H 1.09008 * 109.46907 * 185.51882 * 1 2 3 23 23 H 1.09001 * 109.47468 * 305.51336 * 1 2 3 24 24 H 1.09006 * 109.47372 * 173.95569 * 3 2 1 25 25 H 1.09004 * 109.47307 * 53.95800 * 3 2 1 26 26 H 0.97000 * 120.00337 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.46863 * 299.99538 * 14 12 2 28 28 H 1.08994 * 109.47440 * 59.99936 * 14 12 2 29 29 H 1.09004 * 109.46666 * 299.99745 * 15 14 12 30 30 H 1.09000 * 109.47017 * 180.02562 * 15 14 12 31 31 H 1.09002 * 109.46929 * 179.97438 * 16 15 14 32 32 H 1.09002 * 109.46661 * 60.00047 * 16 15 14 33 33 H 1.08991 * 109.47438 * 300.00079 * 17 16 15 34 34 H 1.09003 * 109.47135 * 179.97438 * 17 16 15 35 35 H 1.09001 * 109.46865 * 65.06187 * 19 18 12 36 36 H 1.08994 * 109.47454 * 185.06416 * 19 18 12 37 37 H 1.09005 * 109.46645 * 305.06415 * 19 18 12 38 38 H 0.96701 * 113.99759 * 180.02562 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.6368 2.0472 -1.2984 5 1 1.0738 1.5116 -2.0484 6 6 2.0265 3.3496 -1.5284 7 7 2.7117 4.0020 -0.6149 8 14 1.5815 4.1875 -3.1375 9 1 0.8134 3.2451 -3.9903 10 1 0.7539 5.3883 -2.8580 11 1 2.8228 4.5951 -3.8432 12 6 1.9955 -0.7660 1.1375 13 1 1.3858 -1.6567 1.2891 14 6 1.9554 0.1003 2.3980 15 6 2.5044 -0.6974 3.5826 16 6 3.9488 -1.1108 3.2936 17 6 3.9889 -1.9770 2.0331 18 6 3.4399 -1.1799 0.8488 19 6 3.4800 -2.0461 -0.4117 20 8 4.2393 -0.0122 0.6500 21 1 -0.3634 0.4258 -0.9352 22 1 -0.3633 -1.0230 0.0988 23 1 -0.3634 0.5970 0.8365 24 1 3.0796 1.3445 0.1082 25 1 1.5610 1.9273 0.8310 26 1 2.9862 4.9181 -0.7767 27 1 2.5652 0.9909 2.2463 28 1 0.9264 0.3952 2.6037 29 1 1.8949 -1.5882 3.7344 30 1 2.4754 -0.0804 4.4807 31 1 4.3401 -1.6786 4.1378 32 1 4.5582 -0.2198 3.1418 33 1 3.3795 -2.8678 2.1849 34 1 5.0180 -2.2712 1.8269 35 1 3.1743 -1.4504 -1.2718 36 1 4.4938 -2.4150 -0.5670 37 1 2.8002 -2.8902 -0.2943 38 1 5.1691 -0.1995 0.4615 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699721904.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:12 Heat of formation + Delta-G solvation = -79.658897 kcal Electronic energy + Delta-G solvation = -17413.900375 eV Core-core repulsion = 14868.876899 eV Total energy + Delta-G solvation = -2545.023476 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.92551 -37.25027 -35.80003 -34.48612 -32.17179 -30.65764 -29.10643 -27.36430 -25.95658 -24.28619 -22.27119 -21.71943 -20.23813 -18.43217 -17.18694 -16.80842 -16.35870 -16.08504 -15.39967 -15.24904 -14.87957 -14.55398 -14.01603 -13.85850 -13.81813 -13.51153 -12.99853 -12.90835 -12.69159 -12.55058 -12.44078 -12.25137 -12.22584 -12.02195 -11.77389 -11.46711 -11.34373 -11.19928 -10.76350 -10.59925 -10.21991 -8.78083 -8.10819 -6.18317 1.38860 1.39508 1.52735 2.43515 3.19795 3.42696 3.52624 3.81036 4.00709 4.12891 4.27003 4.29457 4.50582 4.53696 4.56695 4.64415 4.72215 4.84506 4.92118 5.00502 5.04465 5.08650 5.12769 5.24816 5.26459 5.29039 5.44208 5.46730 5.57559 5.64519 5.72656 5.89852 6.25625 6.55322 6.82168 7.01313 7.21836 7.48717 8.99624 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034650 B = 0.008286 C = 0.008262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.885319 B = 3378.355469 C = 3388.144139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.536 5.536 3 C 0.203 3.797 4 C -0.520 4.520 5 H 0.053 0.947 6 C -0.001 4.001 7 N -0.933 5.933 8 Si 0.962 3.038 9 H -0.266 1.266 10 H -0.281 1.281 11 H -0.278 1.278 12 C 0.095 3.905 13 H 0.094 0.906 14 C -0.142 4.142 15 C -0.108 4.108 16 C -0.112 4.112 17 C -0.133 4.133 18 C 0.136 3.864 19 C -0.157 4.157 20 O -0.559 6.559 21 H 0.051 0.949 22 H 0.078 0.922 23 H 0.001 0.999 24 H 0.060 0.940 25 H -0.055 1.055 26 H 0.260 0.740 27 H 0.039 0.961 28 H 0.037 0.963 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.047 0.953 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.044 0.956 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.962 -13.858 6.070 15.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.258 5.258 3 C 0.077 3.923 4 C -0.558 4.558 5 H 0.071 0.929 6 C -0.198 4.198 7 N -0.574 5.574 8 Si 0.787 3.213 9 H -0.190 1.190 10 H -0.207 1.207 11 H -0.204 1.204 12 C -0.014 4.014 13 H 0.111 0.889 14 C -0.181 4.181 15 C -0.146 4.146 16 C -0.150 4.150 17 C -0.171 4.171 18 C 0.096 3.904 19 C -0.215 4.215 20 O -0.367 6.367 21 H 0.070 0.930 22 H 0.096 0.904 23 H 0.019 0.981 24 H 0.078 0.922 25 H -0.037 1.037 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 1.608 -13.639 5.756 14.891 hybrid contribution -0.106 1.316 -0.144 1.329 sum 1.502 -12.323 5.612 13.624 Atomic orbital electron populations 1.22218 0.88937 1.00296 0.99561 1.62226 1.06735 1.16268 1.40571 1.19722 0.97163 0.82687 0.92689 1.21654 1.33813 0.97466 1.02907 0.92895 1.25839 0.95507 0.98166 1.00328 1.70127 1.39890 1.11500 1.35930 0.85446 0.77991 0.78196 0.79624 1.19014 1.20669 1.20409 1.21838 0.94900 0.96327 0.88371 0.88856 1.22064 0.99257 0.99725 0.97090 1.21467 0.97140 0.99687 0.96298 1.21433 0.96040 0.99606 0.97900 1.22166 1.02285 0.98515 0.94124 1.21253 0.89859 0.85105 0.94202 1.22220 1.01901 0.99397 0.97970 1.86852 1.23655 1.32433 1.93725 0.93043 0.90379 0.98057 0.92202 1.03744 0.93167 0.94199 0.94452 0.90509 0.92312 0.89957 0.93449 0.89636 0.90008 0.93728 0.91572 0.91202 0.78280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.57 9.10 127.69 1.16 2.73 16 2 N -0.54 -23.93 3.96 -901.62 -3.57 -27.50 16 3 C 0.20 11.32 3.27 85.56 0.28 11.60 16 4 C -0.52 -31.14 8.59 25.60 0.22 -30.92 16 5 H 0.05 3.14 7.10 -2.91 -0.02 3.12 16 6 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 7 N -0.93 -58.95 13.29 21.45 0.28 -58.67 16 8 Si 0.96 46.56 29.54 68.60 2.03 48.59 16 9 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 C 0.09 3.39 1.57 44.92 0.07 3.46 16 13 H 0.09 2.87 7.73 -2.39 -0.02 2.85 16 14 C -0.14 -5.29 4.10 30.60 0.13 -5.16 16 15 C -0.11 -2.93 5.92 30.60 0.18 -2.74 16 16 C -0.11 -2.73 5.78 30.59 0.18 -2.55 16 17 C -0.13 -3.02 4.91 30.58 0.15 -2.87 16 18 C 0.14 4.26 0.74 -10.81 -0.01 4.25 16 19 C -0.16 -4.54 8.58 71.98 0.62 -3.92 16 20 O -0.56 -21.28 8.44 -148.98 -1.26 -22.54 16 21 H 0.05 2.24 7.02 -2.39 -0.02 2.23 16 22 H 0.08 2.54 7.84 -2.38 -0.02 2.52 16 23 H 0.00 0.04 7.39 -2.39 -0.02 0.02 16 24 H 0.06 3.58 4.78 -2.38 -0.01 3.57 16 25 H -0.06 -3.43 6.84 -2.38 -0.02 -3.45 16 26 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 27 H 0.04 1.84 6.04 -2.39 -0.01 1.83 16 28 H 0.04 1.44 7.38 -2.39 -0.02 1.42 16 29 H 0.08 1.73 8.14 -2.39 -0.02 1.72 16 30 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.05 1.37 7.68 -2.39 -0.02 1.35 16 33 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.04 1.63 7.77 -2.39 -0.02 1.61 16 36 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 38 H 0.37 10.91 9.04 -74.06 -0.67 10.24 16 Total: -1.00 -70.63 286.48 1.28 -69.35 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.36 Total: 16.51 kcal Atomic # 6 Polarization: -29.18 SS G_CDS: 3.44 Total: -25.74 kcal Atomic # 7 Polarization: -82.88 SS G_CDS: -3.29 Total: -86.17 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -1.26 Total: -22.54 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -70.63 1.28 -69.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699721904.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.307 kcal (2) G-P(sol) polarization free energy of solvation -70.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds