Wall clock time and date at job start Mon Mar 30 2020 03:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.46960 * 2 1 4 4 C 1.52996 * 109.46994 * 179.97438 * 3 2 1 5 5 H 1.09004 * 110.56570 * 52.31714 * 4 3 2 6 6 C 1.54483 * 110.51400 * 289.64381 * 4 3 2 7 7 O 1.44424 * 104.80039 * 265.33320 * 6 4 3 8 8 C 1.44427 * 105.27650 * 319.48511 * 7 6 4 9 9 C 1.54482 * 104.80148 * 40.51527 * 8 7 6 10 10 H 1.09002 * 110.51357 * 94.66392 * 9 8 7 11 11 N 1.46899 * 110.62463 * 217.31702 * 9 8 7 12 12 C 1.46901 * 111.00247 * 271.61222 * 11 9 8 13 13 H 1.09000 * 109.46595 * 325.00411 * 12 11 9 14 14 C 1.53003 * 109.46776 * 85.00080 * 12 11 9 15 15 C 1.50697 * 109.47278 * 205.00288 * 12 11 9 16 16 H 1.08003 * 119.99962 * 359.97438 * 15 12 11 17 17 C 1.37875 * 120.00098 * 179.97438 * 15 12 11 18 18 N 1.31513 * 120.00421 * 179.97438 * 17 15 12 19 19 Si 1.86802 * 119.99810 * 0.02562 * 17 15 12 20 20 H 1.48498 * 109.47601 * 89.99994 * 19 17 15 21 21 H 1.48502 * 109.47111 * 210.00084 * 19 17 15 22 22 H 1.48502 * 109.47242 * 329.99520 * 19 17 15 23 23 H 1.09004 * 109.47561 * 300.00312 * 1 2 3 24 24 H 1.09010 * 109.47043 * 60.00018 * 1 2 3 25 25 H 1.09003 * 109.47241 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47241 * 240.00024 * 2 1 3 27 27 H 1.09002 * 109.47146 * 119.99338 * 2 1 3 28 28 H 1.08999 * 109.47124 * 59.99952 * 3 2 1 29 29 H 1.08994 * 109.46844 * 299.99929 * 3 2 1 30 30 H 1.08995 * 110.36874 * 24.16558 * 6 4 3 31 31 H 1.08998 * 110.37268 * 146.39089 * 6 4 3 32 32 H 1.08999 * 110.37600 * 281.68204 * 8 7 6 33 33 H 1.09000 * 110.37247 * 159.34210 * 8 7 6 34 34 H 1.00895 * 111.00053 * 35.57025 * 11 9 8 35 35 H 1.08997 * 109.46899 * 60.00413 * 14 12 11 36 36 H 1.09005 * 109.46521 * 180.02562 * 14 12 11 37 37 H 1.08998 * 109.47079 * 299.99735 * 14 12 11 38 38 H 0.96993 * 120.00677 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9532 0.8186 -0.8068 6 6 4.1107 0.9564 1.3636 7 8 4.3461 2.1644 2.1193 8 6 4.9152 3.0985 1.1762 9 6 4.1113 2.8842 -0.1255 10 1 3.2890 3.5969 -0.1883 11 7 4.9860 3.0047 -1.2996 12 6 5.0659 4.3988 -1.7557 13 1 4.1035 4.8871 -1.6020 14 6 6.1445 5.1351 -0.9585 15 6 5.4160 4.4287 -3.2211 16 1 5.5647 3.5044 -3.7597 17 6 5.5465 5.6358 -3.8743 18 7 5.8525 5.6620 -5.1531 19 14 5.2899 7.2344 -2.9426 20 1 6.5833 7.6870 -2.3703 21 1 4.7698 8.2704 -3.8708 22 1 4.3125 7.0169 -1.8459 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8901 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.3703 0.3333 1.8651 31 1 5.0408 0.4045 1.2278 32 1 5.9697 2.8768 1.0118 33 1 4.7928 4.1209 1.5337 34 1 5.9043 2.6344 -1.1059 35 1 7.1067 4.6468 -1.1122 36 1 6.2034 6.1697 -1.2967 37 1 5.8911 5.1136 0.1014 38 1 5.9439 6.5112 -5.6127 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699787769.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:50 Heat of formation + Delta-G solvation = -56.276607 kcal Electronic energy + Delta-G solvation = -16514.592042 eV Core-core repulsion = 13970.582498 eV Total energy + Delta-G solvation = -2544.009543 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.66577 -35.92205 -35.18284 -32.58861 -31.08685 -29.36905 -27.10069 -25.77474 -24.94928 -22.82321 -20.87585 -20.34535 -19.91841 -16.83724 -16.21775 -15.97612 -15.08440 -14.88691 -14.64603 -14.02123 -13.62632 -13.36811 -12.85591 -12.61116 -12.44479 -12.37611 -12.18842 -11.96120 -11.40068 -11.23061 -11.13322 -11.03513 -10.76379 -10.44003 -10.34861 -10.22306 -10.13261 -9.59603 -9.51323 -9.13020 -8.58991 -7.52319 -6.06590 -4.04273 3.23721 3.33468 3.36644 4.12665 4.38254 4.65434 4.88533 4.99065 5.08378 5.19071 5.23392 5.25985 5.38809 5.42482 5.48908 5.67723 5.75900 5.85950 5.90846 5.93775 6.02066 6.10175 6.11771 6.19382 6.20481 6.32986 6.41053 6.45935 6.50402 6.70237 6.93961 7.08528 7.67350 7.87250 8.23849 8.66116 9.04364 9.55769 11.06939 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030514 B = 0.006971 C = 0.006223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.381343 B = 4015.523829 C = 4498.079939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.108 4.108 4 C -0.115 4.115 5 H 0.095 0.905 6 C 0.045 3.955 7 O -0.381 6.381 8 C 0.016 3.984 9 C 0.060 3.940 10 H 0.087 0.913 11 N -0.658 5.658 12 C 0.182 3.818 13 H 0.034 0.966 14 C -0.186 4.186 15 C -0.499 4.499 16 H 0.082 0.918 17 C 0.067 3.933 18 N -0.900 5.900 19 Si 0.886 3.114 20 H -0.281 1.281 21 H -0.296 1.296 22 H -0.270 1.270 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.333 0.667 35 H 0.054 0.946 36 H 0.045 0.955 37 H 0.028 0.972 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.789 -8.201 12.383 15.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.145 4.145 4 C -0.134 4.134 5 H 0.113 0.887 6 C -0.031 4.031 7 O -0.299 6.299 8 C -0.063 4.063 9 C -0.052 4.052 10 H 0.105 0.895 11 N -0.288 5.288 12 C 0.073 3.927 13 H 0.052 0.948 14 C -0.245 4.245 15 C -0.537 4.537 16 H 0.100 0.900 17 C -0.134 4.134 18 N -0.539 5.539 19 Si 0.716 3.284 20 H -0.208 1.208 21 H -0.224 1.224 22 H -0.195 1.195 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.151 0.849 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.047 0.953 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.299 -8.217 11.985 15.838 hybrid contribution 0.663 1.449 0.882 1.821 sum -5.636 -6.768 12.867 15.593 Atomic orbital electron populations 1.21772 0.96140 1.01216 1.01819 1.21576 0.95628 0.97212 1.01801 1.21590 0.94059 0.96541 1.02327 1.22575 0.95968 0.97260 0.97580 0.88666 1.23541 0.99617 0.88083 0.91903 1.89066 1.83160 1.24057 1.33653 1.24456 0.97223 0.93939 0.90688 1.23090 0.96786 0.96374 0.88900 0.89517 1.60669 1.15556 1.22164 1.30399 1.19729 0.93914 0.83544 0.95508 0.94787 1.22976 1.02059 1.01473 0.97973 1.20963 1.46633 0.94572 0.91567 0.90033 1.24938 0.94937 0.98717 0.94791 1.69877 1.48818 1.26159 1.09061 0.86900 0.78321 0.83902 0.79228 1.20773 1.22402 1.19510 0.92955 0.92640 0.93085 0.91839 0.92324 0.92077 0.91230 0.89428 0.92722 0.92370 0.89558 0.84885 0.92674 0.93623 0.95287 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 37.16 0.37 -1.10 16 2 C -0.12 -1.32 5.80 -26.73 -0.15 -1.48 16 3 C -0.11 -1.36 4.45 -26.73 -0.12 -1.48 16 4 C -0.11 -1.59 2.90 -89.05 -0.26 -1.85 16 5 H 0.10 1.38 7.97 -51.93 -0.41 0.97 16 6 C 0.05 0.58 7.04 37.94 0.27 0.85 16 7 O -0.38 -5.85 11.65 -35.23 -0.41 -6.26 16 8 C 0.02 0.24 5.82 37.94 0.22 0.46 16 9 C 0.06 0.99 3.06 -66.14 -0.20 0.79 16 10 H 0.09 1.51 7.07 -51.93 -0.37 1.15 16 11 N -0.66 -12.81 6.00 -99.31 -0.60 -13.40 16 12 C 0.18 4.16 2.16 -68.86 -0.15 4.01 16 13 H 0.03 0.82 6.51 -51.93 -0.34 0.48 16 14 C -0.19 -3.89 8.45 37.16 0.31 -3.57 16 15 C -0.50 -13.87 9.42 -34.44 -0.32 -14.19 16 16 H 0.08 2.50 8.06 -52.48 -0.42 2.07 16 17 C 0.07 1.93 5.45 -17.82 -0.10 1.83 16 18 N -0.90 -27.48 13.96 55.43 0.77 -26.70 16 19 Si 0.89 21.79 24.37 -169.99 -4.14 17.64 16 20 H -0.28 -6.73 6.87 56.52 0.39 -6.35 16 21 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.27 -6.35 6.53 56.52 0.37 -5.99 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.57 6.73 -51.93 -0.35 0.22 16 28 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.09 0.98 6.48 -51.93 -0.34 0.64 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.87 7.59 -51.93 -0.39 0.47 16 33 H 0.09 1.30 7.41 -51.93 -0.38 0.92 16 34 H 0.33 6.11 7.87 -39.29 -0.31 5.80 16 35 H 0.05 1.12 8.13 -51.93 -0.42 0.69 16 36 H 0.05 1.02 3.27 -51.93 -0.17 0.85 16 37 H 0.03 0.51 6.02 -51.93 -0.31 0.20 16 38 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 289.36 15.07 4.36 4.36 Total: -1.00 -29.59 289.36 -6.51 -36.10 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.36 Total: 3.99 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: -0.14 Total: -15.73 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.18 Total: -40.11 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -0.41 Total: -6.26 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.14 Total: 17.64 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.59 -6.51 -36.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699787769.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.180 kcal (2) G-P(sol) polarization free energy of solvation -29.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds