Wall clock time and date at job start Mon Mar 30 2020 03:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.46960 * 2 1 4 4 C 1.52996 * 109.46994 * 179.97438 * 3 2 1 5 5 H 1.09004 * 110.56570 * 52.31714 * 4 3 2 6 6 C 1.54483 * 110.51400 * 289.64381 * 4 3 2 7 7 O 1.44424 * 104.80039 * 265.33320 * 6 4 3 8 8 C 1.44427 * 105.27650 * 319.48511 * 7 6 4 9 9 C 1.54482 * 104.80148 * 40.51527 * 8 7 6 10 10 H 1.09002 * 110.51357 * 94.66392 * 9 8 7 11 11 N 1.46899 * 110.62463 * 217.31702 * 9 8 7 12 12 C 1.46901 * 111.00247 * 271.61222 * 11 9 8 13 13 H 1.09000 * 109.46595 * 325.00411 * 12 11 9 14 14 C 1.53003 * 109.46776 * 85.00080 * 12 11 9 15 15 C 1.50697 * 109.47278 * 205.00288 * 12 11 9 16 16 H 1.08003 * 119.99962 * 359.97438 * 15 12 11 17 17 C 1.37875 * 120.00098 * 179.97438 * 15 12 11 18 18 N 1.31513 * 120.00421 * 179.97438 * 17 15 12 19 19 Si 1.86802 * 119.99810 * 0.02562 * 17 15 12 20 20 H 1.48498 * 109.47601 * 89.99994 * 19 17 15 21 21 H 1.48502 * 109.47111 * 210.00084 * 19 17 15 22 22 H 1.48502 * 109.47242 * 329.99520 * 19 17 15 23 23 H 1.09004 * 109.47561 * 300.00312 * 1 2 3 24 24 H 1.09010 * 109.47043 * 60.00018 * 1 2 3 25 25 H 1.09003 * 109.47241 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47241 * 240.00024 * 2 1 3 27 27 H 1.09002 * 109.47146 * 119.99338 * 2 1 3 28 28 H 1.08999 * 109.47124 * 59.99952 * 3 2 1 29 29 H 1.08994 * 109.46844 * 299.99929 * 3 2 1 30 30 H 1.08995 * 110.36874 * 24.16558 * 6 4 3 31 31 H 1.08998 * 110.37268 * 146.39089 * 6 4 3 32 32 H 1.08999 * 110.37600 * 281.68204 * 8 7 6 33 33 H 1.09000 * 110.37247 * 159.34210 * 8 7 6 34 34 H 1.00895 * 111.00053 * 35.57025 * 11 9 8 35 35 H 1.08997 * 109.46899 * 60.00413 * 14 12 11 36 36 H 1.09005 * 109.46521 * 180.02562 * 14 12 11 37 37 H 1.08998 * 109.47079 * 299.99735 * 14 12 11 38 38 H 0.96993 * 120.00677 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9532 0.8186 -0.8068 6 6 4.1107 0.9564 1.3636 7 8 4.3461 2.1644 2.1193 8 6 4.9152 3.0985 1.1762 9 6 4.1113 2.8842 -0.1255 10 1 3.2890 3.5969 -0.1883 11 7 4.9860 3.0047 -1.2996 12 6 5.0659 4.3988 -1.7557 13 1 4.1035 4.8871 -1.6020 14 6 6.1445 5.1351 -0.9585 15 6 5.4160 4.4287 -3.2211 16 1 5.5647 3.5044 -3.7597 17 6 5.5465 5.6358 -3.8743 18 7 5.8525 5.6620 -5.1531 19 14 5.2899 7.2344 -2.9426 20 1 6.5833 7.6870 -2.3703 21 1 4.7698 8.2704 -3.8708 22 1 4.3125 7.0169 -1.8459 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8901 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.3703 0.3333 1.8651 31 1 5.0408 0.4045 1.2278 32 1 5.9697 2.8768 1.0118 33 1 4.7928 4.1209 1.5337 34 1 5.9043 2.6344 -1.1059 35 1 7.1067 4.6468 -1.1122 36 1 6.2034 6.1697 -1.2967 37 1 5.8911 5.1136 0.1014 38 1 5.9439 6.5112 -5.6127 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699787769.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:49 Heat of formation + Delta-G solvation = -77.368713 kcal Electronic energy + Delta-G solvation = -16515.506664 eV Core-core repulsion = 13970.582498 eV Total energy + Delta-G solvation = -2544.924166 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.87097 -37.55742 -36.16146 -34.52790 -32.50523 -30.71168 -28.48148 -27.05566 -26.70327 -23.88110 -22.35813 -21.77738 -21.10197 -18.78417 -17.44756 -17.34711 -16.68548 -16.23887 -15.80564 -15.33136 -15.15327 -14.64779 -14.47499 -14.02895 -13.91902 -13.67756 -13.43518 -13.19591 -12.87067 -12.77459 -12.54552 -12.12466 -12.02387 -11.95835 -11.68240 -11.53630 -11.44681 -11.28479 -11.02540 -10.76633 -10.70789 -9.07382 -8.27478 -6.29920 1.29023 1.34829 1.44498 2.31462 2.95728 3.06765 3.43256 3.75640 3.81807 4.02194 4.11669 4.17600 4.31442 4.40890 4.46263 4.52221 4.53467 4.65019 4.68152 4.78883 4.82090 4.87107 4.94278 5.00203 5.04798 5.13244 5.19549 5.32349 5.37149 5.46476 5.51818 5.65283 5.79979 6.04562 6.66523 6.70137 6.77890 7.35112 8.89924 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030514 B = 0.006971 C = 0.006223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.381343 B = 4015.523829 C = 4498.079939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.104 4.104 4 C -0.110 4.110 5 H 0.087 0.913 6 C 0.048 3.952 7 O -0.391 6.391 8 C 0.021 3.979 9 C 0.057 3.943 10 H 0.075 0.925 11 N -0.668 5.668 12 C 0.188 3.812 13 H 0.027 0.973 14 C -0.180 4.180 15 C -0.503 4.503 16 H 0.036 0.964 17 C 0.009 3.991 18 N -0.951 5.951 19 Si 0.951 3.049 20 H -0.266 1.266 21 H -0.300 1.300 22 H -0.251 1.251 23 H 0.056 0.944 24 H 0.046 0.954 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.109 0.891 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.339 0.661 35 H 0.057 0.943 36 H 0.035 0.965 37 H 0.062 0.938 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.212 -8.322 15.001 18.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.141 4.141 4 C -0.130 4.130 5 H 0.105 0.895 6 C -0.028 4.028 7 O -0.310 6.310 8 C -0.058 4.058 9 C -0.054 4.054 10 H 0.093 0.907 11 N -0.299 5.299 12 C 0.078 3.922 13 H 0.045 0.955 14 C -0.239 4.239 15 C -0.542 4.542 16 H 0.054 0.946 17 C -0.188 4.188 18 N -0.592 5.592 19 Si 0.778 3.222 20 H -0.192 1.192 21 H -0.228 1.228 22 H -0.175 1.175 23 H 0.075 0.925 24 H 0.066 0.934 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.127 0.873 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.158 0.842 35 H 0.076 0.924 36 H 0.053 0.947 37 H 0.081 0.919 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.725 -8.366 14.635 18.149 hybrid contribution 0.774 1.353 0.024 1.559 sum -5.951 -7.013 14.659 17.306 Atomic orbital electron populations 1.21769 0.95385 1.02076 1.01680 1.21551 0.96289 0.95653 1.02357 1.21548 0.93189 0.97936 1.01472 1.22531 0.96710 0.95460 0.98260 0.89453 1.23665 1.00761 0.87534 0.90870 1.89062 1.83208 1.24770 1.33914 1.24343 0.97234 0.94403 0.89784 1.23121 0.96020 0.97798 0.88435 0.90711 1.60510 1.16456 1.20240 1.32650 1.19472 0.94022 0.85789 0.92894 0.95540 1.22839 1.01272 1.00209 0.99578 1.21263 1.45794 0.92870 0.94263 0.94553 1.25797 0.94768 1.02669 0.95531 1.70039 1.50845 1.27197 1.11106 0.85834 0.79224 0.78922 0.78213 1.19240 1.22774 1.17472 0.92483 0.93441 0.91742 0.92223 0.90790 0.91845 0.93167 0.87304 0.91597 0.91716 0.89107 0.84201 0.92399 0.94670 0.91900 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.91 71.98 0.71 -1.92 16 2 C -0.12 -2.32 5.80 30.60 0.18 -2.14 16 3 C -0.10 -2.49 4.45 30.60 0.14 -2.35 16 4 C -0.11 -2.89 2.90 -9.78 -0.03 -2.92 16 5 H 0.09 2.44 7.97 -2.39 -0.02 2.42 16 6 C 0.05 1.09 7.04 72.49 0.51 1.60 16 7 O -0.39 -10.84 11.65 -148.98 -1.74 -12.58 16 8 C 0.02 0.58 5.82 72.49 0.42 1.01 16 9 C 0.06 1.80 3.06 45.93 0.14 1.94 16 10 H 0.07 2.53 7.07 -2.39 -0.02 2.51 16 11 N -0.67 -25.60 6.00 -468.11 -2.81 -28.41 16 12 C 0.19 8.46 2.16 44.17 0.10 8.56 16 13 H 0.03 1.25 6.51 -2.39 -0.02 1.23 16 14 C -0.18 -7.11 8.45 71.98 0.61 -6.50 16 15 C -0.50 -28.60 9.42 25.60 0.24 -28.36 16 16 H 0.04 2.33 8.06 -2.91 -0.02 2.31 16 17 C 0.01 0.53 5.45 84.65 0.46 0.99 16 18 N -0.95 -59.71 13.96 21.45 0.30 -59.41 16 19 Si 0.95 44.67 24.37 68.60 1.67 46.34 16 20 H -0.27 -11.84 6.87 99.48 0.68 -11.16 16 21 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 22 H -0.25 -10.89 6.53 99.48 0.65 -10.24 16 23 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 24 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 25 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.07 1.20 6.73 -2.39 -0.02 1.19 16 28 H 0.06 1.49 8.13 -2.39 -0.02 1.47 16 29 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.11 2.03 6.48 -2.39 -0.02 2.01 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.06 1.73 7.59 -2.39 -0.02 1.72 16 33 H 0.09 2.45 7.41 -2.39 -0.02 2.43 16 34 H 0.34 12.14 7.87 -89.70 -0.71 11.44 16 35 H 0.06 2.23 8.13 -2.39 -0.02 2.21 16 36 H 0.03 1.46 3.27 -2.38 -0.01 1.45 16 37 H 0.06 2.04 6.02 -2.39 -0.01 2.03 16 38 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -64.33 289.36 1.15 -63.18 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 0.24 Total: 20.97 kcal Atomic # 6 Polarization: -33.57 SS G_CDS: 3.48 Total: -30.10 kcal Atomic # 7 Polarization: -85.31 SS G_CDS: -2.51 Total: -87.83 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: -1.74 Total: -12.58 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.67 Total: 46.34 kcal Total: -64.33 1.15 -63.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699787769.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.185 kcal (2) G-P(sol) polarization free energy of solvation -64.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds