Wall clock time and date at job start Mon Mar 30 2020 03:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 C 1.53006 * 109.46626 * 180.02562 * 3 2 1 5 5 H 1.08997 * 110.43521 * 303.90629 * 4 3 2 6 6 C 1.54094 * 110.48748 * 66.45275 * 4 3 2 7 7 O 1.43750 * 107.29751 * 116.64656 * 6 4 3 8 8 C 1.44386 * 106.97008 * 26.50653 * 7 6 4 9 9 C 1.54808 * 110.48378 * 181.21681 * 4 3 2 10 10 H 1.09004 * 110.91250 * 338.64268 * 9 4 3 11 11 N 1.46906 * 110.90631 * 102.24740 * 9 4 3 12 12 C 1.46896 * 110.99807 * 205.00081 * 11 9 4 13 13 C 1.52998 * 109.47116 * 180.02562 * 12 11 9 14 14 C 1.50699 * 109.47435 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99842 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00185 * 179.97438 * 14 13 12 17 17 N 1.31519 * 120.00054 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99982 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47239 * 90.00312 * 18 16 14 20 20 H 1.48506 * 109.47212 * 210.00146 * 18 16 14 21 21 H 1.48495 * 109.47376 * 329.99802 * 18 16 14 22 22 H 1.09000 * 109.46866 * 60.00185 * 1 2 3 23 23 H 1.09001 * 109.47372 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47107 * 300.00294 * 1 2 3 25 25 H 1.08993 * 109.46765 * 239.99415 * 2 1 3 26 26 H 1.09000 * 109.46866 * 119.99815 * 2 1 3 27 27 H 1.08993 * 109.47839 * 60.00073 * 3 2 1 28 28 H 1.09000 * 109.47160 * 299.99635 * 3 2 1 29 29 H 1.09003 * 109.88065 * 236.07039 * 6 4 3 30 30 H 1.08997 * 109.88342 * 357.21987 * 6 4 3 31 31 H 1.09001 * 110.61012 * 78.44790 * 8 7 6 32 32 H 1.09000 * 110.61607 * 201.28357 * 8 7 6 33 33 H 1.00896 * 110.99889 * 81.04505 * 11 9 4 34 34 H 1.09005 * 109.47171 * 299.99593 * 12 11 9 35 35 H 1.08993 * 109.47597 * 59.99794 * 12 11 9 36 36 H 1.09000 * 109.46913 * 299.99350 * 13 12 11 37 37 H 1.09004 * 109.47609 * 59.99439 * 13 12 11 38 38 H 0.96998 * 120.00017 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9510 0.8725 0.8468 6 6 4.1088 0.8659 -1.3242 7 8 4.8348 1.9166 -1.9840 8 6 5.3056 2.8138 -0.9553 9 6 4.1119 2.8922 0.0301 10 1 3.3596 3.5964 -0.3254 11 7 4.5687 3.2526 1.3791 12 6 4.5199 4.7069 1.5803 13 6 5.0023 5.0428 2.9928 14 6 4.9529 6.5348 3.1991 15 1 4.6119 7.1791 2.4023 16 6 5.3430 7.0773 4.4052 17 7 5.7587 6.2928 5.3754 18 14 5.2824 8.9268 4.6606 19 1 3.9533 9.3084 5.2018 20 1 6.3418 9.3289 5.6205 21 1 5.5041 9.6133 3.3626 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 1.6768 1.9564 0.8899 28 1 1.6767 1.9563 -0.8900 29 1 4.7746 0.0274 -1.1196 30 1 3.2793 0.5386 -1.9509 31 1 6.1855 2.4023 -0.4606 32 1 5.5261 3.7957 -1.3740 33 1 5.4953 2.8941 1.5549 34 1 5.1648 5.1966 0.8505 35 1 3.4957 5.0573 1.4529 36 1 4.3578 4.5532 3.7229 37 1 6.0267 4.6925 3.1199 38 1 6.0335 6.6745 6.2237 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699788519.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:43 Heat of formation + Delta-G solvation = -74.978525 kcal Electronic energy + Delta-G solvation = -15871.489401 eV Core-core repulsion = 13326.668882 eV Total energy + Delta-G solvation = -2544.820520 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.73488 -35.62435 -35.30768 -32.99223 -31.15902 -29.59191 -27.25118 -25.89237 -23.97571 -22.82666 -20.84564 -20.80558 -19.94773 -16.65222 -16.31224 -16.03687 -15.30674 -14.87683 -14.48328 -14.22694 -13.86247 -13.40433 -13.15831 -12.80562 -12.60831 -12.26572 -12.21200 -11.77153 -11.37416 -11.17965 -11.11680 -10.94681 -10.76755 -10.60133 -10.49957 -10.41814 -10.05237 -9.64356 -9.38922 -9.17183 -8.37291 -7.85808 -6.01622 -4.04411 3.31273 3.37451 3.40516 3.91413 4.41864 4.53992 4.68089 4.83124 4.94186 5.04895 5.11636 5.23350 5.28247 5.34369 5.34775 5.56095 5.66269 5.73777 5.78463 5.83684 5.90194 5.94772 5.99576 6.16223 6.27422 6.30041 6.34794 6.38559 6.85489 6.92714 7.42802 7.68570 7.77270 7.89171 8.04680 8.40693 9.02745 9.59654 11.09803 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032979 B = 0.004912 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.809729 B = 5699.283516 C = 6200.080646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.106 4.106 4 C -0.114 4.114 5 H 0.090 0.910 6 C 0.048 3.952 7 O -0.381 6.381 8 C 0.017 3.983 9 C 0.061 3.939 10 H 0.090 0.910 11 N -0.677 5.677 12 C 0.065 3.935 13 C 0.025 3.975 14 C -0.522 4.522 15 H 0.054 0.946 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.338 0.662 34 H 0.017 0.983 35 H 0.059 0.941 36 H 0.025 0.975 37 H 0.014 0.986 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.627 -11.539 -11.574 17.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.144 4.144 4 C -0.134 4.134 5 H 0.108 0.892 6 C -0.029 4.029 7 O -0.299 6.299 8 C -0.061 4.061 9 C -0.050 4.050 10 H 0.108 0.892 11 N -0.308 5.308 12 C -0.063 4.063 13 C -0.013 4.013 14 C -0.561 4.561 15 H 0.073 0.927 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.721 3.279 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.199 1.199 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.108 0.892 33 H 0.157 0.843 34 H 0.035 0.965 35 H 0.078 0.922 36 H 0.044 0.956 37 H 0.032 0.968 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.142 -11.619 -11.326 17.349 hybrid contribution 0.786 1.283 -0.039 1.505 sum -5.356 -10.336 -11.365 16.269 Atomic orbital electron populations 1.21774 0.96014 1.01302 1.01903 1.21585 0.95777 0.97135 1.01831 1.21589 0.93649 0.96588 1.02571 1.22545 0.96496 0.96601 0.97723 0.89168 1.23315 0.95417 0.90513 0.93638 1.88836 1.72220 1.38216 1.30667 1.24377 0.97282 0.94325 0.90135 1.23200 0.96373 0.96336 0.89107 0.89187 1.60583 1.31345 1.15524 1.23305 1.22225 0.99963 0.83887 1.00212 1.19073 0.96393 0.96077 0.89720 1.21165 1.43933 0.92222 0.98805 0.92748 1.24998 0.95253 0.97997 0.96057 1.69972 1.44179 1.34794 1.04301 0.86586 0.77741 0.85620 0.77994 1.20613 1.21207 1.19909 0.92898 0.93031 0.92578 0.92285 0.91894 0.90896 0.92128 0.92787 0.89936 0.92166 0.89154 0.84344 0.96504 0.92222 0.95623 0.96790 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16 2 C -0.13 -1.19 5.76 -26.73 -0.15 -1.35 16 3 C -0.11 -1.20 4.44 -26.73 -0.12 -1.32 16 4 C -0.11 -1.41 2.83 -89.09 -0.25 -1.66 16 5 H 0.09 1.15 8.06 -51.93 -0.42 0.73 16 6 C 0.05 0.56 6.92 37.73 0.26 0.82 16 7 O -0.38 -5.44 11.52 -35.23 -0.41 -5.85 16 8 C 0.02 0.24 7.30 38.21 0.28 0.52 16 9 C 0.06 0.89 3.01 -65.71 -0.20 0.69 16 10 H 0.09 1.36 7.56 -51.93 -0.39 0.96 16 11 N -0.68 -11.62 6.35 -104.61 -0.66 -12.28 16 12 C 0.07 1.34 5.49 -3.83 -0.02 1.32 16 13 C 0.02 0.64 5.23 -27.88 -0.15 0.49 16 14 C -0.52 -14.75 9.11 -34.44 -0.31 -15.07 16 15 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 18 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.51 6.86 -51.93 -0.36 0.15 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.86 6.70 -51.93 -0.35 0.51 16 31 H 0.06 0.80 7.77 -51.93 -0.40 0.39 16 32 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.34 5.61 8.20 -39.29 -0.32 5.28 16 34 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 306.34 15.07 4.62 4.62 Total: -1.00 -29.71 306.34 -7.98 -37.70 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -6.85 Total: 0.29 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -0.39 Total: -14.95 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.07 Total: -38.40 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: -0.41 Total: -5.85 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.71 -7.98 -37.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699788519.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.281 kcal (2) G-P(sol) polarization free energy of solvation -29.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds