Wall clock time and date at job start Mon Mar 30 2020 03:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 C 1.53006 * 109.46626 * 180.02562 * 3 2 1 5 5 H 1.08997 * 110.43521 * 303.90629 * 4 3 2 6 6 C 1.54094 * 110.48748 * 66.45275 * 4 3 2 7 7 O 1.43750 * 107.29751 * 116.64656 * 6 4 3 8 8 C 1.44386 * 106.97008 * 26.50653 * 7 6 4 9 9 C 1.54808 * 110.48378 * 181.21681 * 4 3 2 10 10 H 1.09004 * 110.91250 * 338.64268 * 9 4 3 11 11 N 1.46906 * 110.90631 * 102.24740 * 9 4 3 12 12 C 1.46896 * 110.99807 * 205.00081 * 11 9 4 13 13 C 1.52998 * 109.47116 * 180.02562 * 12 11 9 14 14 C 1.50699 * 109.47435 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99842 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00185 * 179.97438 * 14 13 12 17 17 N 1.31519 * 120.00054 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99982 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47239 * 90.00312 * 18 16 14 20 20 H 1.48506 * 109.47212 * 210.00146 * 18 16 14 21 21 H 1.48495 * 109.47376 * 329.99802 * 18 16 14 22 22 H 1.09000 * 109.46866 * 60.00185 * 1 2 3 23 23 H 1.09001 * 109.47372 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47107 * 300.00294 * 1 2 3 25 25 H 1.08993 * 109.46765 * 239.99415 * 2 1 3 26 26 H 1.09000 * 109.46866 * 119.99815 * 2 1 3 27 27 H 1.08993 * 109.47839 * 60.00073 * 3 2 1 28 28 H 1.09000 * 109.47160 * 299.99635 * 3 2 1 29 29 H 1.09003 * 109.88065 * 236.07039 * 6 4 3 30 30 H 1.08997 * 109.88342 * 357.21987 * 6 4 3 31 31 H 1.09001 * 110.61012 * 78.44790 * 8 7 6 32 32 H 1.09000 * 110.61607 * 201.28357 * 8 7 6 33 33 H 1.00896 * 110.99889 * 81.04505 * 11 9 4 34 34 H 1.09005 * 109.47171 * 299.99593 * 12 11 9 35 35 H 1.08993 * 109.47597 * 59.99794 * 12 11 9 36 36 H 1.09000 * 109.46913 * 299.99350 * 13 12 11 37 37 H 1.09004 * 109.47609 * 59.99439 * 13 12 11 38 38 H 0.96998 * 120.00017 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9510 0.8725 0.8468 6 6 4.1088 0.8659 -1.3242 7 8 4.8348 1.9166 -1.9840 8 6 5.3056 2.8138 -0.9553 9 6 4.1119 2.8922 0.0301 10 1 3.3596 3.5964 -0.3254 11 7 4.5687 3.2526 1.3791 12 6 4.5199 4.7069 1.5803 13 6 5.0023 5.0428 2.9928 14 6 4.9529 6.5348 3.1991 15 1 4.6119 7.1791 2.4023 16 6 5.3430 7.0773 4.4052 17 7 5.7587 6.2928 5.3754 18 14 5.2824 8.9268 4.6606 19 1 3.9533 9.3084 5.2018 20 1 6.3418 9.3289 5.6205 21 1 5.5041 9.6133 3.3626 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 1.6768 1.9564 0.8899 28 1 1.6767 1.9563 -0.8900 29 1 4.7746 0.0274 -1.1196 30 1 3.2793 0.5386 -1.9509 31 1 6.1855 2.4023 -0.4606 32 1 5.5261 3.7957 -1.3740 33 1 5.4953 2.8941 1.5549 34 1 5.1648 5.1966 0.8505 35 1 3.4957 5.0573 1.4529 36 1 4.3578 4.5532 3.7229 37 1 6.0267 4.6925 3.1199 38 1 6.0335 6.6745 6.2237 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699788519.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:42 Heat of formation + Delta-G solvation = -94.307154 kcal Electronic energy + Delta-G solvation = -15872.327554 eV Core-core repulsion = 13326.668882 eV Total energy + Delta-G solvation = -2545.658672 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.81925 -37.11956 -36.24550 -34.97093 -32.47674 -30.99940 -28.72630 -26.83722 -25.82349 -23.82385 -22.59335 -21.84020 -21.04679 -18.55475 -17.50774 -17.35453 -16.52103 -16.42223 -15.80555 -15.51683 -15.03505 -14.77525 -14.53189 -14.03361 -13.71605 -13.66032 -13.37084 -13.13715 -12.89844 -12.85004 -12.50452 -12.25194 -12.04672 -11.97214 -11.71663 -11.52199 -11.36900 -11.32771 -11.14354 -10.69300 -10.56233 -9.27373 -8.20767 -6.32153 1.40797 1.42021 1.52991 2.40143 2.81827 3.13072 3.40861 3.61504 3.74071 3.94296 4.11323 4.14949 4.29969 4.38411 4.45761 4.50296 4.59713 4.65803 4.73572 4.78712 4.82922 4.99060 5.02686 5.04885 5.09326 5.16067 5.33328 5.42249 5.46106 5.51056 5.66534 5.74768 5.85211 6.12884 6.24914 6.47909 6.85089 7.37346 8.91362 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032979 B = 0.004912 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.809729 B = 5699.283516 C = 6200.080646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.103 4.103 4 C -0.108 4.108 5 H 0.087 0.913 6 C 0.049 3.951 7 O -0.395 6.395 8 C 0.021 3.979 9 C 0.059 3.941 10 H 0.084 0.916 11 N -0.679 5.679 12 C 0.084 3.916 13 C 0.031 3.969 14 C -0.545 4.545 15 H 0.060 0.940 16 C 0.002 3.998 17 N -0.932 5.932 18 Si 0.966 3.034 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.263 1.263 22 H 0.056 0.944 23 H 0.063 0.937 24 H 0.047 0.953 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.342 0.658 34 H 0.022 0.978 35 H 0.057 0.943 36 H -0.006 1.006 37 H -0.007 1.007 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.054 -11.561 -12.771 18.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.140 4.140 4 C -0.127 4.127 5 H 0.105 0.895 6 C -0.028 4.028 7 O -0.314 6.314 8 C -0.057 4.057 9 C -0.052 4.052 10 H 0.102 0.898 11 N -0.310 5.310 12 C -0.044 4.044 13 C -0.006 4.006 14 C -0.584 4.584 15 H 0.078 0.922 16 C -0.196 4.196 17 N -0.572 5.572 18 Si 0.790 3.210 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.187 1.187 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.066 0.934 25 H 0.091 0.909 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.118 0.882 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.161 0.839 34 H 0.040 0.960 35 H 0.076 0.924 36 H 0.013 0.987 37 H 0.011 0.989 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.576 -11.656 -12.543 18.342 hybrid contribution 0.912 1.225 0.330 1.563 sum -5.664 -10.431 -12.213 17.031 Atomic orbital electron populations 1.21775 0.95479 1.02045 1.01709 1.21558 0.96238 0.95740 1.02419 1.21550 0.92902 0.97836 1.01756 1.22495 0.97102 0.94893 0.98241 0.89500 1.23448 0.96049 0.90127 0.93132 1.88825 1.72603 1.38824 1.31115 1.24306 0.96976 0.94573 0.89886 1.23236 0.96690 0.97607 0.87619 0.89769 1.60488 1.31749 1.13221 1.25580 1.21824 0.99480 0.86156 0.96964 1.18923 0.94587 0.94965 0.92147 1.21611 1.43930 0.93545 0.99266 0.92165 1.25952 0.94636 1.03308 0.95705 1.70104 1.45021 1.37148 1.04880 0.85439 0.77999 0.79232 0.78315 1.19795 1.20708 1.18721 0.92506 0.91833 0.93409 0.90864 0.92100 0.92840 0.91824 0.91403 0.88244 0.91595 0.89132 0.83947 0.95977 0.92437 0.98711 0.98857 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.91 71.98 0.71 -1.72 16 2 C -0.12 -2.09 5.76 30.60 0.18 -1.91 16 3 C -0.10 -2.20 4.44 30.60 0.14 -2.06 16 4 C -0.11 -2.51 2.83 -9.80 -0.03 -2.53 16 5 H 0.09 2.10 8.06 -2.39 -0.02 2.08 16 6 C 0.05 1.03 6.92 72.35 0.50 1.53 16 7 O -0.40 -10.51 11.52 -148.98 -1.72 -12.23 16 8 C 0.02 0.55 7.30 72.66 0.53 1.08 16 9 C 0.06 1.66 3.01 46.21 0.14 1.80 16 10 H 0.08 2.47 7.56 -2.38 -0.02 2.45 16 11 N -0.68 -23.28 6.35 -484.88 -3.08 -26.35 16 12 C 0.08 3.49 5.49 86.30 0.47 3.96 16 13 C 0.03 1.65 5.23 29.85 0.16 1.81 16 14 C -0.55 -31.04 9.11 25.60 0.23 -30.81 16 15 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 16 C 0.00 0.12 5.46 84.65 0.46 0.58 16 17 N -0.93 -56.81 13.29 21.45 0.28 -56.52 16 18 Si 0.97 44.17 29.54 68.60 2.03 46.19 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 22 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 23 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 25 H 0.07 1.06 6.86 -2.39 -0.02 1.04 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.10 1.76 6.70 -2.39 -0.02 1.74 16 31 H 0.07 1.66 7.77 -2.39 -0.02 1.64 16 32 H 0.09 2.35 8.14 -2.39 -0.02 2.34 16 33 H 0.34 11.31 8.20 -89.70 -0.74 10.58 16 34 H 0.02 0.88 8.14 -2.38 -0.02 0.87 16 35 H 0.06 2.39 8.08 -2.39 -0.02 2.37 16 36 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 37 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 38 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -63.12 306.34 1.28 -61.84 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.27 Total: 15.34 kcal Atomic # 6 Polarization: -31.76 SS G_CDS: 3.49 Total: -28.27 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -2.79 Total: -82.88 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: -1.72 Total: -12.23 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -63.12 1.28 -61.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699788519.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.468 kcal (2) G-P(sol) polarization free energy of solvation -63.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds