Wall clock time and date at job start Mon Mar 30 2020 03:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47173 * 2 1 4 4 C 1.53003 * 109.47273 * 179.97438 * 3 2 1 5 5 H 1.08996 * 110.45473 * 303.85401 * 4 3 2 6 6 C 1.54483 * 110.50710 * 66.45495 * 4 3 2 7 7 O 1.44428 * 104.89902 * 142.70828 * 6 4 3 8 8 C 1.44528 * 105.22541 * 319.63499 * 7 6 4 9 9 C 1.54484 * 104.87482 * 40.35897 * 8 7 6 10 10 H 1.08996 * 110.50996 * 94.73811 * 9 8 7 11 11 N 1.46898 * 110.51140 * 217.45023 * 9 8 7 12 12 C 1.46904 * 111.00167 * 269.64562 * 11 9 8 13 13 C 1.53000 * 109.47204 * 179.97438 * 12 11 9 14 14 C 1.50697 * 109.47112 * 179.97438 * 13 12 11 15 15 H 1.08007 * 119.99939 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00238 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99852 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00048 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47015 * 90.00273 * 18 16 14 20 20 H 1.48501 * 109.47012 * 209.99976 * 18 16 14 21 21 H 1.48496 * 109.47187 * 329.99790 * 18 16 14 22 22 H 1.09001 * 109.47615 * 299.99908 * 1 2 3 23 23 H 1.09002 * 109.47415 * 60.00106 * 1 2 3 24 24 H 1.09001 * 109.47653 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47171 * 240.00169 * 2 1 3 26 26 H 1.08995 * 109.47195 * 120.00227 * 2 1 3 27 27 H 1.08999 * 109.47268 * 60.00154 * 3 2 1 28 28 H 1.08995 * 109.47245 * 300.00196 * 3 2 1 29 29 H 1.09002 * 110.37322 * 261.59342 * 6 4 3 30 30 H 1.08999 * 110.37312 * 23.82019 * 6 4 3 31 31 H 1.08997 * 110.27322 * 281.53912 * 8 7 6 32 32 H 1.08992 * 110.40068 * 159.24653 * 8 7 6 33 33 H 1.00903 * 111.00084 * 33.59573 * 11 9 8 34 34 H 1.08999 * 109.46726 * 299.99775 * 12 11 9 35 35 H 1.08996 * 109.46970 * 59.99528 * 12 11 9 36 36 H 1.08996 * 109.46888 * 299.99981 * 13 12 11 37 37 H 1.08998 * 109.46862 * 59.99869 * 13 12 11 38 38 H 0.96996 * 119.99971 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9506 0.8737 0.8490 6 6 4.1118 0.8643 -1.3255 7 8 5.2820 1.6559 -1.6252 8 6 4.9206 3.0125 -1.2818 9 6 4.1143 2.8882 0.0301 10 1 4.7641 3.0341 0.8929 11 7 3.0080 3.8545 0.0478 12 6 3.4285 5.1252 0.6533 13 6 2.2525 6.1039 0.6533 14 6 2.6837 7.4072 1.2750 15 1 3.6955 7.5257 1.6338 16 6 1.7866 8.4483 1.3858 17 7 0.5544 8.3038 0.9494 18 14 2.3209 10.0635 2.1571 19 1 2.8541 10.9630 1.1026 20 1 1.1554 10.7077 2.8143 21 1 3.3778 9.8040 3.1674 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6766 1.9563 -0.8899 29 1 4.3846 -0.1835 -1.1993 30 1 3.3695 0.9697 -2.1167 31 1 4.3031 3.4491 -2.0667 32 1 5.8147 3.6150 -1.1220 33 1 2.6405 4.0004 -0.8805 34 1 3.7549 4.9488 1.6782 35 1 4.2520 5.5472 0.0772 36 1 1.9265 6.2801 -0.3717 37 1 1.4288 5.6820 1.2292 38 1 -0.0767 9.0363 1.0270 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699788521.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:44 Heat of formation + Delta-G solvation = -70.495381 kcal Electronic energy + Delta-G solvation = -16067.382599 eV Core-core repulsion = 13522.756483 eV Total energy + Delta-G solvation = -2544.626116 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.76670 -35.69978 -35.03024 -32.97289 -31.07881 -29.48449 -27.20180 -25.77487 -24.00815 -22.84958 -21.35113 -20.51873 -19.46431 -16.48178 -16.35536 -15.84290 -15.49925 -14.86212 -14.49276 -14.08807 -13.71414 -13.47335 -13.34539 -12.70369 -12.46942 -12.26384 -11.97381 -11.62379 -11.49978 -11.14303 -10.95835 -10.93673 -10.63178 -10.45168 -10.41511 -10.23650 -10.06092 -9.74200 -9.39168 -9.17080 -8.37420 -7.85204 -6.01747 -4.04445 3.30875 3.37270 3.40512 3.97846 4.42531 4.65047 4.77949 4.82873 4.97197 5.12781 5.22582 5.27076 5.32801 5.34464 5.40897 5.69985 5.74995 5.79116 5.83677 5.90812 5.98196 6.06701 6.08487 6.26580 6.29276 6.37858 6.48624 6.67958 6.79597 6.93569 7.43444 7.68693 7.77773 7.89589 8.04814 8.40868 9.02759 9.59632 11.09656 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030325 B = 0.005484 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.101424 B = 5104.876979 C = 5831.394845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.092 4.092 4 C -0.113 4.113 5 H 0.079 0.921 6 C 0.047 3.953 7 O -0.380 6.380 8 C 0.017 3.983 9 C 0.058 3.942 10 H 0.087 0.913 11 N -0.674 5.674 12 C 0.064 3.936 13 C 0.026 3.974 14 C -0.522 4.522 15 H 0.054 0.946 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.047 0.953 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.337 0.663 34 H 0.059 0.941 35 H 0.016 0.984 36 H 0.013 0.987 37 H 0.025 0.975 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.893 -15.037 -3.400 15.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C -0.130 4.130 4 C -0.132 4.132 5 H 0.097 0.903 6 C -0.030 4.030 7 O -0.298 6.298 8 C -0.061 4.061 9 C -0.053 4.053 10 H 0.105 0.895 11 N -0.305 5.305 12 C -0.064 4.064 13 C -0.012 4.012 14 C -0.561 4.561 15 H 0.072 0.928 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.100 0.900 28 H 0.081 0.919 29 H 0.104 0.896 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.156 0.844 34 H 0.078 0.922 35 H 0.034 0.966 36 H 0.031 0.969 37 H 0.044 0.956 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.658 -15.254 -2.909 15.954 hybrid contribution 0.623 1.436 -0.245 1.585 sum 4.280 -13.818 -3.154 14.806 Atomic orbital electron populations 1.21754 0.95988 1.00952 1.02199 1.21630 0.95919 0.97818 1.01207 1.21348 0.92615 0.95016 1.03974 1.22565 0.97385 0.95569 0.97728 0.90286 1.23561 0.87735 0.95809 0.95920 1.89103 1.35504 1.18452 1.86788 1.24302 1.00450 0.84681 0.96698 1.22955 0.92109 0.93091 0.97193 0.89469 1.60723 1.30996 1.12089 1.26675 1.22233 0.98939 0.87726 0.97537 1.19060 0.92718 0.92121 0.97275 1.21169 0.97323 0.97822 1.39789 0.92780 1.24996 0.94905 0.98803 0.95605 1.69971 1.04064 1.32324 1.46887 0.86590 0.78155 0.83763 0.79462 1.20699 1.21181 1.19881 0.92499 0.92756 0.93369 0.92730 0.92473 0.89975 0.91894 0.89643 0.92354 0.92259 0.89343 0.84378 0.92246 0.96594 0.96860 0.95615 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 37.16 0.37 -1.17 16 2 C -0.13 -1.32 5.78 -26.73 -0.15 -1.47 16 3 C -0.09 -1.13 3.61 -26.73 -0.10 -1.22 16 4 C -0.11 -1.39 3.15 -89.05 -0.28 -1.67 16 5 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 6 C 0.05 0.55 6.31 37.94 0.24 0.79 16 7 O -0.38 -5.44 11.66 -35.23 -0.41 -5.85 16 8 C 0.02 0.24 7.31 37.94 0.28 0.52 16 9 C 0.06 0.83 3.42 -66.14 -0.23 0.60 16 10 H 0.09 1.28 7.83 -51.93 -0.41 0.87 16 11 N -0.67 -11.26 4.58 -105.07 -0.48 -11.74 16 12 C 0.06 1.29 5.49 -3.82 -0.02 1.27 16 13 C 0.03 0.66 5.23 -27.88 -0.15 0.51 16 14 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 15 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -26.77 13.29 55.43 0.74 -26.04 16 18 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.51 7.49 -51.93 -0.39 0.12 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.08 1.18 7.82 -51.93 -0.41 0.78 16 28 H 0.06 0.81 7.60 -51.93 -0.39 0.42 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.66 7.81 -51.93 -0.41 0.25 16 31 H 0.06 0.81 7.55 -51.93 -0.39 0.42 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.34 5.53 7.77 -39.29 -0.31 5.22 16 34 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 35 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 304.58 15.07 4.59 4.59 Total: -1.00 -29.40 304.58 -7.92 -37.32 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -6.89 Total: 0.43 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: -0.45 Total: -15.28 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.26 Total: -37.78 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: -0.41 Total: -5.85 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.40 -7.92 -37.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699788521.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.171 kcal (2) G-P(sol) polarization free energy of solvation -29.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds