Wall clock time and date at job start Mon Mar 30 2020 03:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47173 * 2 1 4 4 C 1.53003 * 109.47273 * 179.97438 * 3 2 1 5 5 H 1.08996 * 110.45473 * 303.85401 * 4 3 2 6 6 C 1.54483 * 110.50710 * 66.45495 * 4 3 2 7 7 O 1.44428 * 104.89902 * 142.70828 * 6 4 3 8 8 C 1.44528 * 105.22541 * 319.63499 * 7 6 4 9 9 C 1.54484 * 104.87482 * 40.35897 * 8 7 6 10 10 H 1.08996 * 110.50996 * 94.73811 * 9 8 7 11 11 N 1.46898 * 110.51140 * 217.45023 * 9 8 7 12 12 C 1.46904 * 111.00167 * 269.64562 * 11 9 8 13 13 C 1.53000 * 109.47204 * 179.97438 * 12 11 9 14 14 C 1.50697 * 109.47112 * 179.97438 * 13 12 11 15 15 H 1.08007 * 119.99939 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00238 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99852 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00048 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47015 * 90.00273 * 18 16 14 20 20 H 1.48501 * 109.47012 * 209.99976 * 18 16 14 21 21 H 1.48496 * 109.47187 * 329.99790 * 18 16 14 22 22 H 1.09001 * 109.47615 * 299.99908 * 1 2 3 23 23 H 1.09002 * 109.47415 * 60.00106 * 1 2 3 24 24 H 1.09001 * 109.47653 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47171 * 240.00169 * 2 1 3 26 26 H 1.08995 * 109.47195 * 120.00227 * 2 1 3 27 27 H 1.08999 * 109.47268 * 60.00154 * 3 2 1 28 28 H 1.08995 * 109.47245 * 300.00196 * 3 2 1 29 29 H 1.09002 * 110.37322 * 261.59342 * 6 4 3 30 30 H 1.08999 * 110.37312 * 23.82019 * 6 4 3 31 31 H 1.08997 * 110.27322 * 281.53912 * 8 7 6 32 32 H 1.08992 * 110.40068 * 159.24653 * 8 7 6 33 33 H 1.00903 * 111.00084 * 33.59573 * 11 9 8 34 34 H 1.08999 * 109.46726 * 299.99775 * 12 11 9 35 35 H 1.08996 * 109.46970 * 59.99528 * 12 11 9 36 36 H 1.08996 * 109.46888 * 299.99981 * 13 12 11 37 37 H 1.08998 * 109.46862 * 59.99869 * 13 12 11 38 38 H 0.96996 * 119.99971 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9506 0.8737 0.8490 6 6 4.1118 0.8643 -1.3255 7 8 5.2820 1.6559 -1.6252 8 6 4.9206 3.0125 -1.2818 9 6 4.1143 2.8882 0.0301 10 1 4.7641 3.0341 0.8929 11 7 3.0080 3.8545 0.0478 12 6 3.4285 5.1252 0.6533 13 6 2.2525 6.1039 0.6533 14 6 2.6837 7.4072 1.2750 15 1 3.6955 7.5257 1.6338 16 6 1.7866 8.4483 1.3858 17 7 0.5544 8.3038 0.9494 18 14 2.3209 10.0635 2.1571 19 1 2.8541 10.9630 1.1026 20 1 1.1554 10.7077 2.8143 21 1 3.3778 9.8040 3.1674 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6766 1.9563 -0.8899 29 1 4.3846 -0.1835 -1.1993 30 1 3.3695 0.9697 -2.1167 31 1 4.3031 3.4491 -2.0667 32 1 5.8147 3.6150 -1.1220 33 1 2.6405 4.0004 -0.8805 34 1 3.7549 4.9488 1.6782 35 1 4.2520 5.5472 0.0772 36 1 1.9265 6.2801 -0.3717 37 1 1.4288 5.6820 1.2292 38 1 -0.0767 9.0363 1.0270 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699788521.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:44 Heat of formation + Delta-G solvation = -88.809223 kcal Electronic energy + Delta-G solvation = -16068.176747 eV Core-core repulsion = 13522.756483 eV Total energy + Delta-G solvation = -2545.420264 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.85993 -37.10884 -36.12308 -34.91929 -32.44658 -30.88285 -28.69247 -26.72313 -25.87927 -23.92008 -22.66569 -22.01422 -20.55667 -18.49310 -17.55752 -17.02509 -16.58612 -16.47338 -16.05290 -15.28255 -15.05875 -14.80227 -14.46113 -14.11428 -13.85456 -13.54191 -13.29029 -12.95055 -12.89447 -12.78174 -12.53437 -12.34651 -11.96176 -11.84201 -11.57415 -11.40595 -11.31957 -11.26090 -11.14204 -10.79601 -10.56302 -9.25332 -8.20488 -6.31681 1.40562 1.41743 1.52868 2.40297 2.90165 3.13373 3.44440 3.68059 3.77870 3.90427 4.12303 4.28238 4.32473 4.40941 4.44845 4.53136 4.62951 4.74029 4.76198 4.82874 4.85963 4.98131 5.06905 5.08705 5.17183 5.20939 5.40747 5.45254 5.53409 5.67018 5.68349 5.72089 5.82778 6.14035 6.27085 6.49194 6.85841 7.37777 8.91582 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030325 B = 0.005484 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.101424 B = 5104.876979 C = 5831.394845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.086 4.086 4 C -0.107 4.107 5 H 0.089 0.911 6 C 0.047 3.953 7 O -0.393 6.393 8 C 0.021 3.979 9 C 0.056 3.944 10 H 0.085 0.915 11 N -0.673 5.673 12 C 0.083 3.917 13 C 0.033 3.967 14 C -0.544 4.544 15 H 0.060 0.940 16 C 0.002 3.998 17 N -0.932 5.932 18 Si 0.965 3.035 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.264 1.264 22 H 0.044 0.956 23 H 0.049 0.951 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.108 0.892 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.339 0.661 34 H 0.057 0.943 35 H 0.020 0.980 36 H -0.009 1.009 37 H -0.005 1.005 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.987 -15.743 -3.329 16.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.124 4.124 4 C -0.126 4.126 5 H 0.107 0.893 6 C -0.029 4.029 7 O -0.312 6.312 8 C -0.058 4.058 9 C -0.055 4.055 10 H 0.103 0.897 11 N -0.304 5.304 12 C -0.046 4.046 13 C -0.005 4.005 14 C -0.583 4.583 15 H 0.078 0.922 16 C -0.196 4.196 17 N -0.572 5.572 18 Si 0.790 3.210 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.188 1.188 22 H 0.064 0.936 23 H 0.068 0.932 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.126 0.874 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.110 0.890 33 H 0.158 0.842 34 H 0.076 0.924 35 H 0.039 0.961 36 H 0.010 0.990 37 H 0.013 0.987 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.764 -15.981 -2.844 16.917 hybrid contribution 0.251 1.602 -0.288 1.647 sum 5.015 -14.379 -3.131 15.547 Atomic orbital electron populations 1.21766 0.96070 1.01749 1.01451 1.21589 0.95827 0.96305 1.02294 1.21248 0.92700 0.96253 1.02216 1.22540 0.97173 0.94156 0.98744 0.89258 1.23696 0.87188 0.96594 0.95410 1.89096 1.36629 1.18577 1.86885 1.24226 1.00462 0.84921 0.96172 1.23017 0.91446 0.93507 0.97578 0.89706 1.60633 1.32215 1.10757 1.26801 1.21833 0.96576 0.88215 0.97953 1.18903 0.93686 0.92830 0.95056 1.21619 0.97715 0.99010 1.39944 0.92205 1.25946 0.94845 1.02818 0.96010 1.70104 1.05327 1.33665 1.48063 0.85448 0.77964 0.78865 0.78763 1.19756 1.20774 1.18773 0.93645 0.93171 0.91790 0.91194 0.91718 0.92552 0.92850 0.87354 0.91783 0.92274 0.88992 0.84160 0.92403 0.96130 0.99037 0.98660 0.92767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.91 71.98 0.71 -2.21 16 2 C -0.12 -2.29 5.78 30.59 0.18 -2.11 16 3 C -0.09 -2.05 3.61 30.59 0.11 -1.93 16 4 C -0.11 -2.44 3.15 -9.78 -0.03 -2.47 16 5 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 6 C 0.05 0.99 6.31 72.49 0.46 1.45 16 7 O -0.39 -10.43 11.66 -148.98 -1.74 -12.17 16 8 C 0.02 0.55 7.31 72.49 0.53 1.08 16 9 C 0.06 1.53 3.42 45.93 0.16 1.68 16 10 H 0.08 2.39 7.83 -2.39 -0.02 2.37 16 11 N -0.67 -22.54 4.58 -486.34 -2.23 -24.77 16 12 C 0.08 3.39 5.49 86.30 0.47 3.86 16 13 C 0.03 1.72 5.23 29.85 0.16 1.88 16 14 C -0.54 -30.92 9.11 25.60 0.23 -30.68 16 15 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 16 C 0.00 0.10 5.46 84.65 0.46 0.57 16 17 N -0.93 -56.76 13.29 21.45 0.28 -56.48 16 18 Si 0.97 44.16 29.54 68.60 2.03 46.18 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 22 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.07 1.11 7.49 -2.38 -0.02 1.10 16 26 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.06 1.63 7.82 -2.39 -0.02 1.62 16 28 H 0.05 1.35 7.60 -2.39 -0.02 1.34 16 29 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.06 1.29 7.81 -2.39 -0.02 1.27 16 31 H 0.06 1.55 7.55 -2.39 -0.02 1.53 16 32 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.34 11.21 7.77 -89.69 -0.70 10.51 16 34 H 0.06 2.37 8.08 -2.39 -0.02 2.35 16 35 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 36 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 37 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 38 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -62.72 304.58 2.10 -60.62 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.31 Total: 15.51 kcal Atomic # 6 Polarization: -32.34 SS G_CDS: 3.44 Total: -28.90 kcal Atomic # 7 Polarization: -79.30 SS G_CDS: -1.94 Total: -81.24 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -1.74 Total: -12.17 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -62.72 2.10 -60.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699788521.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.187 kcal (2) G-P(sol) polarization free energy of solvation -62.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds