Wall clock time and date at job start Mon Mar 30 2020 02:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46660 * 2 1 4 4 C 1.52999 * 109.47086 * 119.99589 * 2 1 3 5 5 O 1.42904 * 109.50136 * 64.92515 * 4 2 1 6 6 C 1.53121 * 109.53578 * 304.82806 * 4 2 1 7 7 C 1.53123 * 109.15809 * 182.38531 * 6 4 2 8 8 C 1.53032 * 109.27754 * 57.65237 * 7 6 4 9 9 N 1.46847 * 109.52825 * 300.81899 * 8 7 6 10 10 C 1.46897 * 111.00552 * 185.84210 * 9 8 7 11 11 C 1.50708 * 109.46923 * 300.66950 * 10 9 8 12 12 H 1.07997 * 119.99639 * 354.98687 * 11 10 9 13 13 C 1.37876 * 119.99852 * 174.99154 * 11 10 9 14 14 N 1.31514 * 119.99848 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99981 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47039 * 269.99758 * 15 13 11 17 17 H 1.48495 * 109.47299 * 30.00131 * 15 13 11 18 18 H 1.48500 * 109.46627 * 150.00176 * 15 13 11 19 19 C 1.46843 * 111.19669 * 61.74157 * 9 8 7 20 20 H 1.08999 * 109.47398 * 300.00027 * 1 2 3 21 21 H 1.08997 * 109.47131 * 60.00445 * 1 2 3 22 22 H 1.09003 * 109.46511 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47398 * 239.99972 * 2 1 3 24 24 H 1.09008 * 109.47413 * 299.99810 * 3 2 1 25 25 H 1.08999 * 109.47238 * 59.99874 * 3 2 1 26 26 H 1.09003 * 109.47059 * 179.97438 * 3 2 1 27 27 H 0.96696 * 113.99605 * 180.02562 * 5 4 2 28 28 H 1.08997 * 109.51781 * 302.28725 * 6 4 2 29 29 H 1.09002 * 109.52353 * 62.47950 * 6 4 2 30 30 H 1.08995 * 109.50025 * 177.59569 * 7 6 4 31 31 H 1.09002 * 109.50272 * 297.67138 * 7 6 4 32 32 H 1.09001 * 109.46109 * 180.80631 * 8 7 6 33 33 H 1.09004 * 109.46414 * 60.83803 * 8 7 6 34 34 H 1.08998 * 109.47298 * 180.66694 * 10 9 8 35 35 H 1.09000 * 109.47095 * 60.66495 * 10 9 8 36 36 H 0.97001 * 120.00275 * 180.02562 * 14 13 11 37 37 H 1.09000 * 109.46222 * 58.27494 * 19 9 8 38 38 H 1.08997 * 109.46494 * 178.24553 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 8 1.6608 -2.0978 1.1936 6 6 1.4337 -0.0739 2.4975 7 6 1.9955 -0.7630 3.7442 8 6 3.5219 -0.6542 3.7370 9 7 4.0536 -1.2883 2.5239 10 6 5.5218 -1.3256 2.5494 11 6 6.0583 0.0791 2.6514 12 1 5.3815 0.9197 2.6115 13 6 7.4130 0.2908 2.7955 14 7 7.8812 1.5166 2.8840 15 14 8.5835 -1.1634 2.8652 16 1 8.7529 -1.5953 4.2758 17 1 8.0271 -2.2853 2.0673 18 1 9.9011 -0.7653 2.3078 19 6 3.5653 -0.6136 1.3145 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 1.8935 -0.5138 -0.8900 24 1 1.6766 1.9564 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 3.1300 1.4426 0.0005 27 1 1.9515 -2.6169 1.9559 28 1 1.6905 0.9851 2.5198 29 1 0.3497 -0.1866 2.4762 30 1 1.6003 -0.2786 4.6370 31 1 1.7050 -1.8136 3.7413 32 1 3.9259 -1.1564 4.6161 33 1 3.8112 0.3966 3.7542 34 1 5.8895 -1.7895 1.6342 35 1 5.8557 -1.9053 3.4100 36 1 8.8344 1.6657 2.9850 37 1 3.8543 0.4370 1.3430 38 1 4.0006 -1.0862 0.4341 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710193885.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:02 Heat of formation + Delta-G solvation = -63.416917 kcal Electronic energy + Delta-G solvation = -17216.846452 eV Core-core repulsion = 14672.527282 eV Total energy + Delta-G solvation = -2544.319171 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.70008 -35.92823 -34.12932 -32.87026 -31.68927 -28.78638 -27.32361 -26.82703 -23.94911 -22.91921 -21.60320 -19.66538 -18.48065 -17.02768 -16.42153 -15.39404 -14.70185 -14.44874 -14.27688 -13.82256 -13.48166 -13.27971 -12.65906 -12.55395 -12.40807 -11.98867 -11.81834 -11.64655 -11.38328 -11.20502 -10.95723 -10.82588 -10.62549 -10.49536 -10.35003 -10.20703 -10.00561 -9.62976 -9.52279 -9.10972 -8.62772 -7.24938 -6.14202 -4.14222 3.25198 3.33231 3.37456 4.36659 4.57886 4.75313 4.98732 5.18130 5.20605 5.35597 5.42133 5.43701 5.55987 5.73723 5.82328 5.93187 5.98771 6.04610 6.12660 6.16763 6.21743 6.28539 6.38604 6.44436 6.46410 6.54464 6.69503 6.73883 6.83176 6.93724 7.04141 7.51883 7.99596 8.04933 8.20190 8.40702 8.87454 9.48799 10.98662 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.036007 B = 0.007996 C = 0.007554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.443894 B = 3500.947237 C = 3705.604694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.080 4.080 3 C -0.153 4.153 4 C 0.144 3.856 5 O -0.561 6.561 6 C -0.146 4.146 7 C -0.121 4.121 8 C 0.058 3.942 9 N -0.536 5.536 10 C 0.156 3.844 11 C -0.551 4.551 12 H 0.074 0.926 13 C 0.072 3.928 14 N -0.899 5.899 15 Si 0.879 3.121 16 H -0.276 1.276 17 H -0.264 1.264 18 H -0.287 1.287 19 C 0.036 3.964 20 H 0.054 0.946 21 H 0.048 0.952 22 H 0.059 0.941 23 H 0.073 0.927 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.380 0.620 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.046 0.954 34 H 0.027 0.973 35 H 0.026 0.974 36 H 0.264 0.736 37 H 0.055 0.945 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.393 -3.317 -2.170 13.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.099 4.099 3 C -0.210 4.210 4 C 0.103 3.897 5 O -0.369 6.369 6 C -0.184 4.184 7 C -0.159 4.159 8 C -0.071 4.071 9 N -0.260 5.260 10 C 0.029 3.971 11 C -0.590 4.590 12 H 0.092 0.908 13 C -0.131 4.131 14 N -0.537 5.537 15 Si 0.706 3.294 16 H -0.202 1.202 17 H -0.189 1.189 18 H -0.213 1.213 19 C -0.093 4.093 20 H 0.073 0.927 21 H 0.067 0.933 22 H 0.078 0.922 23 H 0.092 0.908 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.229 0.771 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.045 0.955 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.650 -3.511 -2.718 13.406 hybrid contribution 1.465 0.141 0.683 1.623 sum -11.184 -3.370 -2.036 11.857 Atomic orbital electron populations 1.21819 0.95192 1.01943 1.00988 1.20973 0.95896 0.95670 0.97335 1.21990 1.02284 0.95145 1.01558 1.21175 0.93095 0.81877 0.93591 1.86327 1.80732 1.20486 1.49337 1.22327 1.00130 1.00544 0.95383 1.21665 0.96531 1.00448 0.97242 1.21943 0.92473 0.99069 0.93604 1.62304 1.11078 1.51590 1.01022 1.20151 0.83309 0.96737 0.96885 1.21672 0.93410 0.92574 1.51345 0.90789 1.24971 0.98335 0.95577 0.94172 1.69925 1.13938 1.20007 1.49815 0.86789 0.80438 0.83363 0.78786 1.20192 1.18862 1.21293 1.22647 0.93337 0.99167 0.94099 0.92732 0.93340 0.92174 0.90810 0.92702 0.92455 0.91447 0.77123 0.91264 0.91628 0.92035 0.91978 0.91629 0.93576 0.95459 0.95609 0.92662 0.92700 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.61 37.16 0.32 -1.43 16 2 C -0.08 -1.13 2.53 -90.62 -0.23 -1.36 16 3 C -0.15 -2.10 8.46 37.16 0.31 -1.78 16 4 C 0.14 2.27 0.57 -90.54 -0.05 2.22 16 5 O -0.56 -9.08 12.50 -35.23 -0.44 -9.52 16 6 C -0.15 -2.14 4.25 -26.60 -0.11 -2.25 16 7 C -0.12 -1.80 5.78 -26.65 -0.15 -1.95 16 8 C 0.06 1.08 5.03 -3.84 -0.02 1.06 16 9 N -0.54 -10.85 4.31 -236.12 -1.02 -11.87 16 10 C 0.16 3.71 4.19 -4.97 -0.02 3.69 16 11 C -0.55 -15.13 8.27 -34.44 -0.28 -15.41 16 12 H 0.07 2.20 6.10 -52.49 -0.32 1.88 16 13 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 14 N -0.90 -27.13 13.96 55.43 0.77 -26.35 16 15 Si 0.88 21.33 27.37 -169.99 -4.65 16.68 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 17 H -0.26 -6.20 6.69 56.52 0.38 -5.82 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 C 0.04 0.69 3.63 -3.84 -0.01 0.68 16 20 H 0.05 0.64 6.41 -51.93 -0.33 0.31 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.77 7.82 -51.93 -0.41 0.37 16 23 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 24 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 25 H 0.06 0.77 6.52 -51.93 -0.34 0.43 16 26 H 0.07 1.05 6.33 -51.93 -0.33 0.72 16 27 H 0.38 5.76 6.92 45.56 0.32 6.08 16 28 H 0.07 1.04 6.47 -51.93 -0.34 0.71 16 29 H 0.07 0.87 6.51 -51.93 -0.34 0.54 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.86 6.91 -51.93 -0.36 0.50 16 32 H 0.07 1.23 8.12 -51.93 -0.42 0.81 16 33 H 0.05 0.99 6.73 -51.93 -0.35 0.64 16 34 H 0.03 0.67 7.49 -51.93 -0.39 0.28 16 35 H 0.03 0.62 7.29 -51.93 -0.38 0.24 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.05 1.16 5.02 -51.93 -0.26 0.90 16 38 H 0.07 1.38 8.08 -51.93 -0.42 0.96 16 LS Contribution 279.41 15.07 4.21 4.21 Total: -1.00 -29.13 279.41 -6.99 -36.12 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -5.51 Total: 5.32 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -0.35 Total: -14.59 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: -0.24 Total: -38.22 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: -0.44 Total: -9.52 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.65 Total: 16.68 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.13 -6.99 -36.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710193885.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.301 kcal (2) G-P(sol) polarization free energy of solvation -29.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds