Wall clock time and date at job start Mon Mar 30 2020 02:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46660 * 2 1 4 4 C 1.52999 * 109.47086 * 119.99589 * 2 1 3 5 5 O 1.42904 * 109.50136 * 64.92515 * 4 2 1 6 6 C 1.53121 * 109.53578 * 304.82806 * 4 2 1 7 7 C 1.53123 * 109.15809 * 182.38531 * 6 4 2 8 8 C 1.53032 * 109.27754 * 57.65237 * 7 6 4 9 9 N 1.46847 * 109.52825 * 300.81899 * 8 7 6 10 10 C 1.46897 * 111.00552 * 185.84210 * 9 8 7 11 11 C 1.50708 * 109.46923 * 300.66950 * 10 9 8 12 12 H 1.07997 * 119.99639 * 354.98687 * 11 10 9 13 13 C 1.37876 * 119.99852 * 174.99154 * 11 10 9 14 14 N 1.31514 * 119.99848 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99981 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47039 * 269.99758 * 15 13 11 17 17 H 1.48495 * 109.47299 * 30.00131 * 15 13 11 18 18 H 1.48500 * 109.46627 * 150.00176 * 15 13 11 19 19 C 1.46843 * 111.19669 * 61.74157 * 9 8 7 20 20 H 1.08999 * 109.47398 * 300.00027 * 1 2 3 21 21 H 1.08997 * 109.47131 * 60.00445 * 1 2 3 22 22 H 1.09003 * 109.46511 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47398 * 239.99972 * 2 1 3 24 24 H 1.09008 * 109.47413 * 299.99810 * 3 2 1 25 25 H 1.08999 * 109.47238 * 59.99874 * 3 2 1 26 26 H 1.09003 * 109.47059 * 179.97438 * 3 2 1 27 27 H 0.96696 * 113.99605 * 180.02562 * 5 4 2 28 28 H 1.08997 * 109.51781 * 302.28725 * 6 4 2 29 29 H 1.09002 * 109.52353 * 62.47950 * 6 4 2 30 30 H 1.08995 * 109.50025 * 177.59569 * 7 6 4 31 31 H 1.09002 * 109.50272 * 297.67138 * 7 6 4 32 32 H 1.09001 * 109.46109 * 180.80631 * 8 7 6 33 33 H 1.09004 * 109.46414 * 60.83803 * 8 7 6 34 34 H 1.08998 * 109.47298 * 180.66694 * 10 9 8 35 35 H 1.09000 * 109.47095 * 60.66495 * 10 9 8 36 36 H 0.97001 * 120.00275 * 180.02562 * 14 13 11 37 37 H 1.09000 * 109.46222 * 58.27494 * 19 9 8 38 38 H 1.08997 * 109.46494 * 178.24553 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 8 1.6608 -2.0978 1.1936 6 6 1.4337 -0.0739 2.4975 7 6 1.9955 -0.7630 3.7442 8 6 3.5219 -0.6542 3.7370 9 7 4.0536 -1.2883 2.5239 10 6 5.5218 -1.3256 2.5494 11 6 6.0583 0.0791 2.6514 12 1 5.3815 0.9197 2.6115 13 6 7.4130 0.2908 2.7955 14 7 7.8812 1.5166 2.8840 15 14 8.5835 -1.1634 2.8652 16 1 8.7529 -1.5953 4.2758 17 1 8.0271 -2.2853 2.0673 18 1 9.9011 -0.7653 2.3078 19 6 3.5653 -0.6136 1.3145 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 1.8935 -0.5138 -0.8900 24 1 1.6766 1.9564 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 3.1300 1.4426 0.0005 27 1 1.9515 -2.6169 1.9559 28 1 1.6905 0.9851 2.5198 29 1 0.3497 -0.1866 2.4762 30 1 1.6003 -0.2786 4.6370 31 1 1.7050 -1.8136 3.7413 32 1 3.9259 -1.1564 4.6161 33 1 3.8112 0.3966 3.7542 34 1 5.8895 -1.7895 1.6342 35 1 5.8557 -1.9053 3.4100 36 1 8.8344 1.6657 2.9850 37 1 3.8543 0.4370 1.3430 38 1 4.0006 -1.0862 0.4341 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710193885.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:02 Heat of formation + Delta-G solvation = -84.642145 kcal Electronic energy + Delta-G solvation = -17217.766847 eV Core-core repulsion = 14672.527282 eV Total energy + Delta-G solvation = -2545.239566 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.07939 -37.48406 -35.34610 -34.77284 -33.34219 -30.26218 -29.07981 -27.98588 -25.59827 -24.31059 -23.19896 -21.23418 -19.85134 -18.94737 -17.89081 -16.85486 -16.27311 -16.05788 -15.65216 -15.41366 -15.09961 -14.60742 -14.41620 -13.88368 -13.75002 -13.46118 -13.25934 -13.04862 -12.95120 -12.69496 -12.41215 -12.27340 -12.05815 -11.97793 -11.88404 -11.74577 -11.59019 -11.48901 -10.87255 -10.80751 -10.48600 -9.02870 -8.34629 -6.39807 1.32968 1.34811 1.46782 2.31098 3.00484 3.18846 3.37695 3.76110 3.90807 4.05981 4.15329 4.24628 4.35716 4.47492 4.64033 4.68143 4.74764 4.80985 4.84572 4.91713 4.97524 5.03209 5.04326 5.08027 5.12746 5.13990 5.24423 5.28309 5.34301 5.46827 5.52576 5.55722 6.05516 6.29801 6.38628 6.66291 6.94983 7.27288 8.81502 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.036007 B = 0.007996 C = 0.007554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.443894 B = 3500.947237 C = 3705.604694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.081 4.081 3 C -0.149 4.149 4 C 0.150 3.850 5 O -0.562 6.562 6 C -0.143 4.143 7 C -0.112 4.112 8 C 0.058 3.942 9 N -0.527 5.527 10 C 0.161 3.839 11 C -0.549 4.549 12 H 0.035 0.965 13 C 0.011 3.989 14 N -0.946 5.946 15 Si 0.949 3.051 16 H -0.265 1.265 17 H -0.249 1.249 18 H -0.284 1.284 19 C 0.040 3.960 20 H 0.063 0.937 21 H 0.065 0.935 22 H 0.057 0.943 23 H 0.066 0.934 24 H 0.075 0.925 25 H 0.060 0.940 26 H 0.037 0.963 27 H 0.384 0.616 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.009 0.991 34 H 0.024 0.976 35 H 0.033 0.967 36 H 0.266 0.734 37 H 0.027 0.973 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.977 -4.946 -2.034 14.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.100 4.100 3 C -0.206 4.206 4 C 0.109 3.891 5 O -0.370 6.370 6 C -0.180 4.180 7 C -0.149 4.149 8 C -0.070 4.070 9 N -0.250 5.250 10 C 0.033 3.967 11 C -0.588 4.588 12 H 0.053 0.947 13 C -0.187 4.187 14 N -0.586 5.586 15 Si 0.772 3.228 16 H -0.190 1.190 17 H -0.173 1.173 18 H -0.210 1.210 19 C -0.089 4.089 20 H 0.082 0.918 21 H 0.084 0.916 22 H 0.076 0.924 23 H 0.084 0.916 24 H 0.094 0.906 25 H 0.079 0.921 26 H 0.056 0.944 27 H 0.234 0.766 28 H 0.079 0.921 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.028 0.972 34 H 0.042 0.958 35 H 0.051 0.949 36 H 0.075 0.925 37 H 0.045 0.955 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.261 -5.152 -2.582 15.381 hybrid contribution 1.928 0.721 0.625 2.151 sum -12.333 -4.431 -1.957 13.250 Atomic orbital electron populations 1.21761 0.92951 1.02160 1.02337 1.21006 0.97674 0.95250 0.96078 1.21950 1.00383 0.95488 1.02779 1.21127 0.90294 0.82324 0.95323 1.86337 1.80428 1.20444 1.49804 1.22310 1.01474 0.99855 0.94376 1.21628 0.92938 1.02007 0.98376 1.21999 0.95664 0.96566 0.92821 1.62340 1.08852 1.51736 1.02101 1.20021 0.85662 0.94231 0.96746 1.21873 0.93073 0.93447 1.50422 0.94685 1.25912 1.00333 0.98542 0.93885 1.70073 1.14494 1.22520 1.51555 0.85687 0.77803 0.79822 0.79500 1.18965 1.17261 1.21011 1.22660 0.96266 0.97027 0.92970 0.91833 0.91628 0.92440 0.91601 0.90576 0.92133 0.94358 0.76592 0.92067 0.89047 0.89854 0.90070 0.91596 0.97216 0.95817 0.94932 0.92498 0.95497 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.61 71.98 0.62 -2.30 16 2 C -0.08 -2.20 2.53 -10.79 -0.03 -2.22 16 3 C -0.15 -4.04 8.46 71.98 0.61 -3.43 16 4 C 0.15 4.58 0.57 -10.74 -0.01 4.57 16 5 O -0.56 -16.91 12.50 -148.98 -1.86 -18.78 16 6 C -0.14 -3.87 4.25 30.68 0.13 -3.74 16 7 C -0.11 -3.06 5.78 30.65 0.18 -2.89 16 8 C 0.06 2.16 5.03 86.32 0.43 2.60 16 9 N -0.53 -21.34 4.31 -900.94 -3.88 -25.23 16 10 C 0.16 7.69 4.19 85.56 0.36 8.05 16 11 C -0.55 -31.17 8.27 25.60 0.21 -30.96 16 12 H 0.03 2.22 6.10 -2.91 -0.02 2.20 16 13 C 0.01 0.66 5.47 84.65 0.46 1.12 16 14 N -0.95 -58.92 13.96 21.45 0.30 -58.62 16 15 Si 0.95 44.05 27.37 68.60 1.88 45.93 16 16 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 17 H -0.25 -10.87 6.69 99.48 0.67 -10.21 16 18 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 19 C 0.04 1.55 3.63 86.33 0.31 1.86 16 20 H 0.06 1.26 6.41 -2.39 -0.02 1.25 16 21 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.06 1.29 7.82 -2.39 -0.02 1.27 16 23 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 25 H 0.06 1.58 6.52 -2.39 -0.02 1.57 16 26 H 0.04 1.24 6.33 -2.39 -0.02 1.23 16 27 H 0.38 10.65 6.92 -74.06 -0.51 10.14 16 28 H 0.06 1.78 6.47 -2.39 -0.02 1.76 16 29 H 0.09 2.08 6.51 -2.39 -0.02 2.07 16 30 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.08 1.97 6.91 -2.39 -0.02 1.95 16 32 H 0.07 2.43 8.12 -2.39 -0.02 2.41 16 33 H 0.01 0.43 6.73 -2.38 -0.02 0.41 16 34 H 0.02 1.15 7.49 -2.39 -0.02 1.13 16 35 H 0.03 1.52 7.29 -2.39 -0.02 1.50 16 36 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 37 H 0.03 1.21 5.02 -2.39 -0.01 1.19 16 38 H 0.05 2.20 8.08 -2.39 -0.02 2.18 16 Total: -1.00 -64.14 279.41 0.20 -63.93 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.49 Total: 20.10 kcal Atomic # 6 Polarization: -30.62 SS G_CDS: 3.28 Total: -27.33 kcal Atomic # 7 Polarization: -80.27 SS G_CDS: -3.58 Total: -83.85 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -1.86 Total: -18.78 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.88 Total: 45.93 kcal Total: -64.14 0.20 -63.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710193885.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.709 kcal (2) G-P(sol) polarization free energy of solvation -64.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds