Wall clock time and date at job start Mon Mar 30 2020 02:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47510 * 2 1 4 4 C 1.53004 * 109.47442 * 179.97438 * 3 2 1 5 5 O 1.42896 * 109.57386 * 300.16087 * 4 3 2 6 6 C 1.53111 * 109.52416 * 179.97438 * 4 3 2 7 7 C 1.53041 * 109.28037 * 182.44108 * 6 4 3 8 8 N 1.46852 * 109.51922 * 59.17850 * 7 6 4 9 9 C 1.46903 * 110.99722 * 174.15856 * 8 7 6 10 10 C 1.50701 * 109.46796 * 59.32702 * 9 8 7 11 11 H 1.07998 * 119.99839 * 4.99345 * 10 9 8 12 12 C 1.37876 * 119.99750 * 185.00629 * 10 9 8 13 13 N 1.31510 * 120.00126 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99834 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47380 * 59.99292 * 14 12 10 16 16 H 1.48496 * 109.47092 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46781 * 299.99396 * 14 12 10 18 18 C 1.46842 * 111.20149 * 298.26046 * 8 7 6 19 19 C 1.53038 * 109.52325 * 61.74221 * 18 8 7 20 20 H 1.08993 * 109.47343 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.46826 * 300.00426 * 1 2 3 22 22 H 1.09005 * 109.46394 * 59.99815 * 1 2 3 23 23 H 1.09002 * 109.47240 * 239.99433 * 2 1 3 24 24 H 1.09003 * 109.46633 * 119.99699 * 2 1 3 25 25 H 1.09002 * 109.47332 * 59.99489 * 3 2 1 26 26 H 1.09000 * 109.47464 * 300.00277 * 3 2 1 27 27 H 0.96700 * 114.00315 * 59.83549 * 5 4 3 28 28 H 1.08998 * 109.50627 * 302.38521 * 6 4 3 29 29 H 1.09003 * 109.50389 * 62.50532 * 6 4 3 30 30 H 1.08992 * 109.46361 * 179.19523 * 7 6 4 31 31 H 1.08995 * 109.45969 * 299.16708 * 7 6 4 32 32 H 1.09003 * 109.46904 * 179.32279 * 9 8 7 33 33 H 1.08994 * 109.47552 * 299.32341 * 9 8 7 34 34 H 0.96999 * 119.99886 * 180.02562 * 13 12 10 35 35 H 1.09003 * 109.46201 * 301.72735 * 18 8 7 36 36 H 1.09003 * 109.46294 * 181.75591 * 18 8 7 37 37 H 1.08998 * 109.50784 * 180.87858 * 19 18 8 38 38 H 1.09004 * 109.50564 * 60.76087 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 8 4.0484 0.7661 1.1651 6 6 4.0819 2.8855 0.0000 7 6 5.6111 2.8793 -0.0609 8 7 6.0509 2.1845 -1.2775 9 6 7.5078 2.2793 -1.4404 10 6 8.1879 1.6649 -0.2441 11 1 7.6007 1.1745 0.5181 12 6 9.5598 1.7293 -0.1226 13 7 10.2748 2.3264 -1.0509 14 14 10.4028 0.9684 1.3606 15 1 10.1063 -0.4859 1.4066 16 1 11.8700 1.1710 1.2540 17 1 9.9022 1.6150 2.6002 18 6 5.6114 0.7834 -1.2772 19 6 4.0823 0.7270 -1.2526 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5139 -0.8900 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 1.6767 1.9563 0.8899 26 1 1.6768 1.9563 -0.8899 27 1 3.7619 -0.1552 1.2304 28 1 3.6852 3.4119 -0.8681 29 1 3.7560 3.3875 0.9110 30 1 5.9780 3.9055 -0.0759 31 1 6.0072 2.3648 0.8145 32 1 7.8080 1.7462 -2.3425 33 1 7.7966 3.3269 -1.5243 34 1 11.2400 2.3713 -0.9656 35 1 6.0077 0.2787 -0.3960 36 1 5.9787 0.2873 -2.1756 37 1 3.7566 -0.3131 -1.2366 38 1 3.6856 1.2195 -2.1404 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710662954.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:18 Heat of formation + Delta-G solvation = -93.191430 kcal Electronic energy + Delta-G solvation = -16778.701291 eV Core-core repulsion = 14233.091000 eV Total energy + Delta-G solvation = -2545.610290 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.74127 -37.74543 -34.87263 -34.81524 -32.67302 -31.70474 -29.23330 -27.31052 -24.82844 -24.18901 -22.80120 -21.46319 -20.63921 -18.60268 -17.22606 -17.02486 -16.34957 -16.00896 -15.77655 -15.41625 -15.30647 -14.67819 -14.16670 -13.84648 -13.60487 -13.25905 -13.19248 -12.94051 -12.71749 -12.65872 -12.44642 -12.25249 -12.18272 -11.97720 -11.90603 -11.77031 -11.63134 -11.44238 -10.82978 -10.61793 -10.49430 -8.99556 -8.15813 -6.35994 1.34305 1.36324 1.44839 2.36132 3.07550 3.30860 3.52973 3.76743 3.90611 3.95010 4.22351 4.34675 4.41708 4.54955 4.64817 4.69706 4.79633 4.84453 4.89836 4.93974 5.02455 5.07373 5.11657 5.21811 5.27850 5.29919 5.31758 5.34842 5.41340 5.48077 5.52137 5.73464 6.06533 6.27610 6.58275 6.85258 6.96000 7.35203 8.85851 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.044077 B = 0.006512 C = 0.006193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.105114 B = 4298.679783 C = 4520.487566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.130 4.130 3 C -0.132 4.132 4 C 0.134 3.866 5 O -0.574 6.574 6 C -0.097 4.097 7 C 0.070 3.930 8 N -0.539 5.539 9 C 0.198 3.802 10 C -0.555 4.555 11 H 0.052 0.948 12 C 0.011 3.989 13 N -0.927 5.927 14 Si 0.957 3.043 15 H -0.270 1.270 16 H -0.278 1.278 17 H -0.273 1.273 18 C 0.066 3.934 19 C -0.130 4.130 20 H 0.060 0.940 21 H 0.053 0.947 22 H 0.056 0.944 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.380 0.620 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.048 0.952 31 H 0.016 0.984 32 H 0.003 0.997 33 H 0.005 0.995 34 H 0.266 0.734 35 H 0.017 0.983 36 H 0.052 0.948 37 H 0.087 0.913 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.406 -4.359 2.159 19.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.167 4.167 3 C -0.170 4.170 4 C 0.094 3.906 5 O -0.382 6.382 6 C -0.135 4.135 7 C -0.059 4.059 8 N -0.263 5.263 9 C 0.071 3.929 10 C -0.594 4.594 11 H 0.070 0.930 12 C -0.188 4.188 13 N -0.567 5.567 14 Si 0.782 3.218 15 H -0.195 1.195 16 H -0.203 1.203 17 H -0.198 1.198 18 C -0.063 4.063 19 C -0.167 4.167 20 H 0.079 0.921 21 H 0.072 0.928 22 H 0.075 0.925 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.229 0.771 28 H 0.107 0.893 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.035 0.965 32 H 0.021 0.979 33 H 0.023 0.977 34 H 0.075 0.925 35 H 0.035 0.965 36 H 0.070 0.930 37 H 0.105 0.895 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -18.183 -3.494 1.803 18.603 hybrid contribution 1.325 -1.065 1.119 2.035 sum -16.858 -4.559 2.921 17.706 Atomic orbital electron populations 1.21729 0.94862 1.02033 1.01944 1.21604 0.96823 0.95922 1.02364 1.22164 0.93239 0.98459 1.03107 1.21257 0.93014 0.91984 0.84336 1.86591 1.77724 1.29393 1.44537 1.21619 0.93864 0.95337 1.02657 1.21741 0.95541 0.97307 0.91277 1.62431 1.13518 1.13958 1.36401 1.19409 0.83568 0.95197 0.94693 1.21938 0.92687 1.36878 1.07911 0.92964 1.25817 0.98238 0.95606 0.99126 1.70055 1.06655 1.44326 1.35615 0.85622 0.77421 0.79109 0.79625 1.19495 1.20295 1.19803 1.21823 0.95901 0.89423 0.99132 1.22280 0.93772 1.01653 0.99035 0.92121 0.92785 0.92459 0.91272 0.91730 0.91405 0.90255 0.77061 0.89275 0.90823 0.93360 0.96517 0.97911 0.97691 0.92548 0.96474 0.92957 0.89459 0.90086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 71.98 0.71 -1.30 16 2 C -0.13 -2.07 5.28 30.59 0.16 -1.91 16 3 C -0.13 -2.59 4.49 30.59 0.14 -2.45 16 4 C 0.13 3.65 0.74 -10.71 -0.01 3.64 16 5 O -0.57 -17.37 11.80 -148.98 -1.76 -19.12 16 6 C -0.10 -3.05 5.11 30.65 0.16 -2.89 16 7 C 0.07 2.96 4.90 86.33 0.42 3.39 16 8 N -0.54 -24.56 4.86 -900.92 -4.38 -28.94 16 9 C 0.20 11.04 5.12 85.56 0.44 11.48 16 10 C -0.56 -32.46 7.72 25.60 0.20 -32.27 16 11 H 0.05 3.08 5.86 -2.91 -0.02 3.06 16 12 C 0.01 0.67 5.46 84.65 0.46 1.13 16 13 N -0.93 -56.87 13.29 21.45 0.28 -56.58 16 14 Si 0.96 45.68 29.54 68.60 2.03 47.70 16 15 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 16 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 17 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 18 C 0.07 2.63 4.98 86.33 0.43 3.06 16 19 C -0.13 -3.68 4.66 30.65 0.14 -3.54 16 20 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 21 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 22 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 23 H 0.07 1.08 6.50 -2.39 -0.02 1.07 16 24 H 0.06 0.99 6.78 -2.39 -0.02 0.98 16 25 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.38 8.59 7.34 -74.06 -0.54 8.04 16 28 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.05 2.11 8.12 -2.39 -0.02 2.09 16 31 H 0.02 0.80 6.34 -2.39 -0.02 0.79 16 32 H 0.00 0.16 8.08 -2.39 -0.02 0.15 16 33 H 0.00 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 35 H 0.02 0.77 6.48 -2.39 -0.02 0.75 16 36 H 0.05 2.13 8.08 -2.39 -0.02 2.11 16 37 H 0.09 2.02 6.58 -2.39 -0.02 2.01 16 38 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -66.86 290.91 -0.09 -66.95 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.48 Total: 11.66 kcal Atomic # 6 Polarization: -24.93 SS G_CDS: 3.25 Total: -21.67 kcal Atomic # 7 Polarization: -81.43 SS G_CDS: -4.09 Total: -85.52 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -1.76 Total: -19.12 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.70 kcal Total: -66.86 -0.09 -66.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710662954.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.238 kcal (2) G-P(sol) polarization free energy of solvation -66.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds