Wall clock time and date at job start Mon Mar 30 2020 03:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46901 * 2 1 4 4 C 1.52997 * 109.47086 * 240.00342 * 2 1 3 5 5 C 1.52996 * 109.47372 * 120.00088 * 2 1 3 6 6 H 1.09006 * 109.47958 * 180.02562 * 5 2 1 7 7 C 1.53094 * 109.49164 * 300.05255 * 5 2 1 8 8 C 1.53175 * 109.16661 * 177.59455 * 7 5 2 9 9 H 1.09004 * 109.53853 * 62.89066 * 8 7 5 10 10 N 1.46496 * 109.54546 * 183.15286 * 8 7 5 11 11 C 1.36933 * 120.00254 * 204.55909 * 10 8 7 12 12 H 1.08004 * 119.99894 * 0.02562 * 11 10 8 13 13 C 1.38811 * 120.00276 * 180.02562 * 11 10 8 14 14 N 1.31618 * 119.99896 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 120.00042 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47145 * 89.99995 * 15 13 11 17 17 H 1.48503 * 109.46631 * 209.99905 * 15 13 11 18 18 H 1.48497 * 109.46972 * 329.99407 * 15 13 11 19 19 C 1.53176 * 109.03666 * 303.02385 * 8 7 5 20 20 C 1.53089 * 109.16219 * 56.97677 * 19 8 7 21 21 O 1.42897 * 109.41656 * 302.39053 * 20 19 8 22 22 H 1.09004 * 109.47370 * 299.99224 * 1 2 3 23 23 H 1.08999 * 109.47858 * 60.00259 * 1 2 3 24 24 H 1.09007 * 109.46812 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47441 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.47153 * 300.00500 * 3 2 1 27 27 H 1.09003 * 109.47070 * 59.99760 * 3 2 1 28 28 H 1.08997 * 109.47243 * 299.99684 * 4 2 1 29 29 H 1.09002 * 109.47437 * 59.99784 * 4 2 1 30 30 H 1.09001 * 109.46915 * 179.97438 * 4 2 1 31 31 H 1.09004 * 109.51815 * 57.68915 * 7 5 2 32 32 H 1.09006 * 109.52300 * 297.50374 * 7 5 2 33 33 H 0.97003 * 120.00232 * 24.55484 * 10 8 7 34 34 H 0.97001 * 120.00231 * 179.97438 * 14 13 11 35 35 H 1.08997 * 109.51782 * 176.88435 * 19 8 7 36 36 H 1.08995 * 109.52112 * 297.07021 * 19 8 7 37 37 H 1.09002 * 109.47970 * 62.37821 * 20 19 8 38 38 H 1.09002 * 109.48050 * 182.40304 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 1 3.1301 -0.7209 1.2495 7 6 1.5289 -0.0007 2.4995 8 6 1.9935 -0.7628 3.7444 9 1 3.0825 -0.7559 3.7907 10 7 1.4462 -0.1232 4.9433 11 6 2.0792 -0.2722 6.1484 12 1 2.9821 -0.8610 6.2149 13 6 1.5603 0.3335 7.2845 14 7 0.4602 1.0514 7.2034 15 14 2.4242 0.1307 8.9284 16 1 3.4174 1.2206 9.1033 17 1 1.4238 0.1920 10.0241 18 1 3.1179 -1.1818 8.9644 19 6 1.4933 -2.2082 3.6610 20 6 2.0058 -2.8434 2.3658 21 8 1.5639 -2.0686 1.2494 22 1 -0.3634 0.5137 0.8901 23 1 -0.3635 0.5138 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 3.1299 1.4426 -0.0005 26 1 1.6765 1.9564 -0.8900 27 1 1.6765 1.9563 0.8900 28 1 1.6767 -1.7488 -1.2493 29 1 1.6766 -0.2073 -2.1393 30 1 3.1300 -0.7207 -1.2495 31 1 0.4396 0.0349 2.4796 32 1 1.9271 1.0137 2.5237 33 1 0.6355 0.4061 4.8835 34 1 0.0974 1.4744 7.9974 35 1 1.8659 -2.7724 4.5158 36 1 0.4033 -2.2171 3.6646 37 1 3.0954 -2.8709 2.3808 38 1 1.6177 -3.8584 2.2803 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721847921.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:01 Heat of formation + Delta-G solvation = -58.773904 kcal Electronic energy + Delta-G solvation = -16788.236496 eV Core-core repulsion = 14244.118661 eV Total energy + Delta-G solvation = -2544.117834 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.59132 -36.22161 -34.91081 -32.14905 -29.81581 -29.22562 -27.14637 -27.08454 -24.56696 -23.09335 -22.41667 -19.61364 -18.66571 -17.12346 -15.87231 -15.74684 -14.58411 -14.47625 -14.11136 -13.99886 -13.57468 -13.41979 -13.07849 -12.68514 -12.47614 -12.03514 -11.86446 -11.56245 -11.26724 -11.01246 -10.90574 -10.87100 -10.72579 -10.43795 -10.40678 -10.21219 -10.11231 -9.76063 -9.58911 -9.03837 -8.85642 -6.95418 -5.76497 -3.05225 3.43010 3.48067 3.49824 4.05428 4.57506 4.85149 4.94285 5.14725 5.39076 5.45494 5.50947 5.56175 5.60644 5.64220 5.71098 5.79856 5.83102 5.89609 5.94534 6.00434 6.07250 6.10254 6.20856 6.24611 6.34014 6.42607 6.49810 6.52079 6.59186 6.69620 6.90093 7.10999 7.62969 7.69390 8.42083 9.53130 10.11366 10.46562 11.46251 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.041807 B = 0.006458 C = 0.006017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.586941 B = 4334.664974 C = 4652.349828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.059 4.059 3 C -0.144 4.144 4 C -0.136 4.136 5 C 0.106 3.894 6 H 0.051 0.949 7 C -0.155 4.155 8 C 0.177 3.823 9 H 0.044 0.956 10 N -0.723 5.723 11 C -0.239 4.239 12 H 0.069 0.931 13 C -0.014 4.014 14 N -0.933 5.933 15 Si 0.906 3.094 16 H -0.290 1.290 17 H -0.291 1.291 18 H -0.282 1.282 19 C -0.171 4.171 20 C 0.064 3.936 21 O -0.381 6.381 22 H 0.059 0.941 23 H 0.047 0.953 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.041 0.959 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.582 -3.278 -14.978 15.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.060 4.060 3 C -0.201 4.201 4 C -0.194 4.194 5 C 0.048 3.952 6 H 0.069 0.931 7 C -0.193 4.193 8 C 0.067 3.933 9 H 0.062 0.938 10 N -0.363 5.363 11 C -0.370 4.370 12 H 0.087 0.913 13 C -0.210 4.210 14 N -0.582 5.582 15 Si 0.737 3.263 16 H -0.217 1.217 17 H -0.218 1.218 18 H -0.208 1.208 19 C -0.212 4.212 20 C -0.013 4.013 21 O -0.300 6.300 22 H 0.078 0.922 23 H 0.066 0.934 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.217 0.783 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.573 -3.371 -14.954 15.544 hybrid contribution 0.336 0.125 1.320 1.368 sum 2.908 -3.246 -13.635 14.314 Atomic orbital electron populations 1.21854 0.94106 1.02363 1.01288 1.20515 0.96528 0.94779 0.94129 1.21928 1.00938 0.95036 1.02232 1.21801 1.00424 1.00862 0.96282 1.22030 0.96661 0.82336 0.94154 0.93078 1.22594 1.02192 0.99964 0.94586 1.20215 0.96216 0.90157 0.86684 0.93847 1.42416 1.30787 1.59927 1.03184 1.19245 1.05973 1.25958 0.85819 0.91270 1.24740 0.97825 1.00459 0.97947 1.69663 1.22223 1.37694 1.28584 0.86202 0.78446 0.77628 0.84002 1.21728 1.21769 1.20791 1.22916 1.01820 1.00029 0.96399 1.22562 0.97816 0.94426 0.86480 1.87810 1.74476 1.22527 1.45187 0.92177 0.93377 0.91933 0.92708 0.92505 0.91732 0.91905 0.93148 0.93162 0.91001 0.90969 0.78265 0.93516 0.91393 0.91796 0.94024 0.89879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 7.98 37.16 0.30 -1.47 16 2 C -0.06 -0.75 0.63 -154.51 -0.10 -0.85 16 3 C -0.14 -1.66 8.12 37.16 0.30 -1.36 16 4 C -0.14 -1.54 8.33 37.16 0.31 -1.23 16 5 C 0.11 1.58 1.90 -26.68 -0.05 1.53 16 6 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 7 C -0.16 -2.68 4.17 -26.59 -0.11 -2.79 16 8 C 0.18 3.62 2.86 -67.75 -0.19 3.43 16 9 H 0.04 0.91 8.09 -51.93 -0.42 0.49 16 10 N -0.72 -18.42 5.13 -53.25 -0.27 -18.70 16 11 C -0.24 -6.69 9.93 -15.06 -0.15 -6.84 16 12 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 13 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 14 N -0.93 -28.43 13.06 55.49 0.72 -27.71 16 15 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 16 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 17 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 C -0.17 -3.17 5.72 -26.59 -0.15 -3.33 16 20 C 0.06 0.98 6.84 37.20 0.25 1.24 16 21 O -0.38 -5.98 9.06 -35.23 -0.32 -6.30 16 22 H 0.06 0.82 6.38 -51.93 -0.33 0.48 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.84 7.68 -51.92 -0.40 0.44 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.80 6.49 -51.93 -0.34 0.47 16 28 H 0.06 0.75 7.68 -51.93 -0.40 0.35 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 1.29 6.31 -51.93 -0.33 0.96 16 32 H 0.07 1.25 6.57 -51.93 -0.34 0.91 16 33 H 0.38 10.41 7.80 -40.82 -0.32 10.09 16 34 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 294.68 15.07 4.44 4.44 Total: -1.00 -29.81 294.68 -6.79 -36.59 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -6.65 Total: 6.34 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: 0.31 Total: -12.16 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: 0.45 Total: -46.41 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -0.32 Total: -6.30 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.81 -6.79 -36.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721847921.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.181 kcal (2) G-P(sol) polarization free energy of solvation -29.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds