Wall clock time and date at job start Mon Mar 30 2020 03:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46901 * 2 1 4 4 C 1.52997 * 109.47086 * 240.00342 * 2 1 3 5 5 C 1.52996 * 109.47372 * 120.00088 * 2 1 3 6 6 H 1.09006 * 109.47958 * 180.02562 * 5 2 1 7 7 C 1.53094 * 109.49164 * 300.05255 * 5 2 1 8 8 C 1.53175 * 109.16661 * 177.59455 * 7 5 2 9 9 H 1.09004 * 109.53853 * 62.89066 * 8 7 5 10 10 N 1.46496 * 109.54546 * 183.15286 * 8 7 5 11 11 C 1.36933 * 120.00254 * 204.55909 * 10 8 7 12 12 H 1.08004 * 119.99894 * 0.02562 * 11 10 8 13 13 C 1.38811 * 120.00276 * 180.02562 * 11 10 8 14 14 N 1.31618 * 119.99896 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 120.00042 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47145 * 89.99995 * 15 13 11 17 17 H 1.48503 * 109.46631 * 209.99905 * 15 13 11 18 18 H 1.48497 * 109.46972 * 329.99407 * 15 13 11 19 19 C 1.53176 * 109.03666 * 303.02385 * 8 7 5 20 20 C 1.53089 * 109.16219 * 56.97677 * 19 8 7 21 21 O 1.42897 * 109.41656 * 302.39053 * 20 19 8 22 22 H 1.09004 * 109.47370 * 299.99224 * 1 2 3 23 23 H 1.08999 * 109.47858 * 60.00259 * 1 2 3 24 24 H 1.09007 * 109.46812 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47441 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.47153 * 300.00500 * 3 2 1 27 27 H 1.09003 * 109.47070 * 59.99760 * 3 2 1 28 28 H 1.08997 * 109.47243 * 299.99684 * 4 2 1 29 29 H 1.09002 * 109.47437 * 59.99784 * 4 2 1 30 30 H 1.09001 * 109.46915 * 179.97438 * 4 2 1 31 31 H 1.09004 * 109.51815 * 57.68915 * 7 5 2 32 32 H 1.09006 * 109.52300 * 297.50374 * 7 5 2 33 33 H 0.97003 * 120.00232 * 24.55484 * 10 8 7 34 34 H 0.97001 * 120.00231 * 179.97438 * 14 13 11 35 35 H 1.08997 * 109.51782 * 176.88435 * 19 8 7 36 36 H 1.08995 * 109.52112 * 297.07021 * 19 8 7 37 37 H 1.09002 * 109.47970 * 62.37821 * 20 19 8 38 38 H 1.09002 * 109.48050 * 182.40304 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 1 3.1301 -0.7209 1.2495 7 6 1.5289 -0.0007 2.4995 8 6 1.9935 -0.7628 3.7444 9 1 3.0825 -0.7559 3.7907 10 7 1.4462 -0.1232 4.9433 11 6 2.0792 -0.2722 6.1484 12 1 2.9821 -0.8610 6.2149 13 6 1.5603 0.3335 7.2845 14 7 0.4602 1.0514 7.2034 15 14 2.4242 0.1307 8.9284 16 1 3.4174 1.2206 9.1033 17 1 1.4238 0.1920 10.0241 18 1 3.1179 -1.1818 8.9644 19 6 1.4933 -2.2082 3.6610 20 6 2.0058 -2.8434 2.3658 21 8 1.5639 -2.0686 1.2494 22 1 -0.3634 0.5137 0.8901 23 1 -0.3635 0.5138 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 3.1299 1.4426 -0.0005 26 1 1.6765 1.9564 -0.8900 27 1 1.6765 1.9563 0.8900 28 1 1.6767 -1.7488 -1.2493 29 1 1.6766 -0.2073 -2.1393 30 1 3.1300 -0.7207 -1.2495 31 1 0.4396 0.0349 2.4796 32 1 1.9271 1.0137 2.5237 33 1 0.6355 0.4061 4.8835 34 1 0.0974 1.4744 7.9974 35 1 1.8659 -2.7724 4.5158 36 1 0.4033 -2.2171 3.6646 37 1 3.0954 -2.8709 2.3808 38 1 1.6177 -3.8584 2.2803 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721847921.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:01 Heat of formation + Delta-G solvation = -77.121057 kcal Electronic energy + Delta-G solvation = -16789.032088 eV Core-core repulsion = 14244.118661 eV Total energy + Delta-G solvation = -2544.913427 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.87030 -37.46606 -36.56209 -34.08029 -31.22201 -30.99465 -28.13119 -28.03936 -26.37915 -24.45562 -24.07440 -21.17518 -19.78088 -19.17555 -17.23654 -16.98588 -16.47077 -15.82263 -15.59922 -15.33490 -15.01048 -14.71821 -14.55986 -14.07955 -13.90592 -13.08700 -13.04289 -12.88023 -12.80757 -12.56130 -12.47869 -12.27861 -12.15768 -11.93593 -11.80120 -11.79852 -11.56183 -11.38298 -10.94615 -10.88715 -10.37487 -9.04102 -7.96434 -5.25661 1.45387 1.47230 1.55581 2.53898 2.86656 3.36186 3.64469 3.86885 3.95925 4.05805 4.14036 4.23818 4.31079 4.37963 4.46873 4.62372 4.73603 4.75529 4.82167 4.85158 4.92664 4.97857 5.02777 5.12161 5.14264 5.15524 5.25354 5.30907 5.40170 5.46395 5.50552 5.59122 5.60102 6.25285 6.37761 7.31015 8.06261 8.30609 9.27235 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.041807 B = 0.006458 C = 0.006017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.586941 B = 4334.664974 C = 4652.349828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.058 4.058 3 C -0.143 4.143 4 C -0.132 4.132 5 C 0.109 3.891 6 H 0.058 0.942 7 C -0.144 4.144 8 C 0.169 3.831 9 H 0.040 0.960 10 N -0.736 5.736 11 C -0.241 4.241 12 H 0.075 0.925 13 C -0.076 4.076 14 N -0.971 5.971 15 Si 0.973 3.027 16 H -0.286 1.286 17 H -0.296 1.296 18 H -0.269 1.269 19 C -0.163 4.163 20 C 0.071 3.929 21 O -0.383 6.383 22 H 0.043 0.957 23 H 0.067 0.933 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.371 0.629 34 H 0.251 0.749 35 H 0.055 0.945 36 H 0.047 0.953 37 H 0.056 0.944 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.761 -3.954 -16.363 17.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.059 4.059 3 C -0.200 4.200 4 C -0.189 4.189 5 C 0.051 3.949 6 H 0.076 0.924 7 C -0.182 4.182 8 C 0.061 3.939 9 H 0.058 0.942 10 N -0.376 5.376 11 C -0.373 4.373 12 H 0.093 0.907 13 C -0.268 4.268 14 N -0.622 5.622 15 Si 0.802 3.198 16 H -0.213 1.213 17 H -0.222 1.222 18 H -0.194 1.194 19 C -0.203 4.203 20 C -0.007 4.007 21 O -0.302 6.302 22 H 0.062 0.938 23 H 0.086 0.914 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.203 0.797 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.783 -4.080 -16.379 17.298 hybrid contribution -0.029 0.324 1.694 1.725 sum 3.754 -3.756 -14.685 15.615 Atomic orbital electron populations 1.21832 0.94360 1.01757 1.01482 1.20552 0.96326 0.95312 0.93672 1.21921 1.01407 0.94224 1.02431 1.21756 1.00865 1.00311 0.95948 1.22102 0.96989 0.81917 0.93882 0.92376 1.22476 1.01433 0.99784 0.94522 1.20476 0.95835 0.91388 0.86208 0.94192 1.42628 1.30395 1.60342 1.04200 1.19622 1.05836 1.24939 0.86879 0.90747 1.25570 0.98826 1.00897 1.01535 1.69825 1.23967 1.39209 1.29183 0.85142 0.77207 0.78029 0.79414 1.21311 1.22220 1.19410 1.22753 1.00670 0.98697 0.98207 1.22579 0.98684 0.95050 0.84345 1.87831 1.74711 1.22776 1.44925 0.93772 0.91413 0.92906 0.91985 0.90655 0.93227 0.92681 0.91424 0.92439 0.92106 0.91278 0.79732 0.94017 0.92581 0.93459 0.92531 0.87503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 7.98 71.98 0.57 -2.72 16 2 C -0.06 -1.35 0.63 -52.18 -0.03 -1.39 16 3 C -0.14 -2.99 8.12 71.98 0.58 -2.41 16 4 C -0.13 -2.57 8.33 71.98 0.60 -1.97 16 5 C 0.11 3.08 1.90 30.62 0.06 3.13 16 6 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 7 C -0.14 -4.97 4.17 30.68 0.13 -4.84 16 8 C 0.17 6.93 2.86 45.11 0.13 7.06 16 9 H 0.04 1.66 8.09 -2.38 -0.02 1.64 16 10 N -0.74 -38.30 5.13 -322.38 -1.65 -39.96 16 11 C -0.24 -13.62 9.93 84.03 0.83 -12.78 16 12 H 0.07 4.04 7.83 -2.91 -0.02 4.01 16 13 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 14 N -0.97 -60.43 13.06 21.65 0.28 -60.14 16 15 Si 0.97 46.59 29.55 68.60 2.03 48.62 16 16 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 17 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 19 C -0.16 -5.99 5.72 30.68 0.18 -5.82 16 20 C 0.07 2.01 6.84 72.01 0.49 2.50 16 21 O -0.38 -11.30 9.06 -148.98 -1.35 -12.65 16 22 H 0.04 1.18 6.38 -2.38 -0.02 1.17 16 23 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.05 1.36 7.68 -2.38 -0.02 1.34 16 25 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 27 H 0.05 1.18 6.49 -2.39 -0.02 1.17 16 28 H 0.05 1.17 7.68 -2.39 -0.02 1.15 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 2.23 6.31 -2.38 -0.02 2.22 16 32 H 0.07 2.41 6.57 -2.38 -0.02 2.39 16 33 H 0.37 20.83 7.80 -92.71 -0.72 20.11 16 34 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 35 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -63.61 294.68 3.61 -60.00 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: 0.29 Total: 27.34 kcal Atomic # 6 Polarization: -27.21 SS G_CDS: 4.01 Total: -23.20 kcal Atomic # 7 Polarization: -98.73 SS G_CDS: -1.37 Total: -100.10 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -1.35 Total: -12.65 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -63.61 3.61 -60.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721847921.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.122 kcal (2) G-P(sol) polarization free energy of solvation -63.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds