Wall clock time and date at job start Mon Mar 30 2020 02:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.45330 * 2 1 4 4 O 1.42900 * 109.47194 * 174.08990 * 3 2 1 5 5 C 1.53027 * 109.45983 * 240.02949 * 2 1 3 6 6 C 1.53122 * 109.28216 * 299.15984 * 5 2 1 7 7 C 1.53118 * 109.15197 * 302.34374 * 6 5 2 8 8 C 1.53037 * 109.27685 * 57.66752 * 7 6 5 9 9 N 1.46839 * 109.46075 * 119.97538 * 2 1 3 10 10 C 1.46903 * 111.00230 * 294.17218 * 9 2 1 11 11 C 1.52999 * 109.47066 * 197.41915 * 10 9 2 12 12 C 1.50706 * 109.46817 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00103 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99903 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00127 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00158 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47521 * 89.99708 * 16 14 12 18 18 H 1.48499 * 109.47284 * 209.99714 * 16 14 12 19 19 H 1.48503 * 109.47131 * 329.99920 * 16 14 12 20 20 H 1.08999 * 109.46739 * 300.02559 * 1 2 3 21 21 H 1.09002 * 109.47017 * 60.02372 * 1 2 3 22 22 H 1.08994 * 109.46900 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47594 * 294.09311 * 3 2 1 24 24 H 1.09009 * 109.47158 * 54.09077 * 3 2 1 25 25 H 0.96699 * 113.99811 * 180.02562 * 4 3 2 26 26 H 1.09004 * 109.50952 * 59.10293 * 5 2 1 27 27 H 1.09000 * 109.50600 * 179.21932 * 5 2 1 28 28 H 1.09007 * 109.51927 * 62.25458 * 6 5 2 29 29 H 1.09001 * 109.52724 * 182.37705 * 6 5 2 30 30 H 1.08996 * 109.50837 * 297.71973 * 7 6 5 31 31 H 1.09002 * 109.49162 * 177.59941 * 7 6 5 32 32 H 1.09001 * 109.45958 * 180.79576 * 8 7 6 33 33 H 1.09006 * 109.46402 * 60.81528 * 8 7 6 34 34 H 1.08997 * 109.47472 * 317.42451 * 10 9 2 35 35 H 1.08999 * 109.46707 * 77.41833 * 10 9 2 36 36 H 1.09001 * 109.47209 * 300.00120 * 11 10 9 37 37 H 1.08999 * 109.47424 * 60.00358 * 11 10 9 38 38 H 0.96996 * 120.00191 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0396 1.4427 0.0000 4 8 3.4619 1.4455 0.1387 5 6 2.0399 -0.7208 -1.2499 6 6 1.5443 -2.1695 -1.2357 7 6 2.0272 -2.8530 0.0466 8 6 1.5174 -2.0705 1.2590 9 7 2.0193 -0.6917 1.1993 10 6 1.6652 0.0506 2.4165 11 6 2.5323 -0.4345 3.5801 12 6 2.1685 0.3266 4.8289 13 1 1.3960 1.0806 4.7961 14 6 2.8221 0.0605 6.0134 15 7 3.7626 -0.8579 6.0535 16 14 2.3708 1.0034 7.5615 17 1 1.2915 0.2827 8.2832 18 1 3.5639 1.1149 8.4387 19 1 1.8983 2.3622 7.1934 20 1 -0.3633 0.5142 0.8898 21 1 -0.3633 0.5135 -0.8902 22 1 -0.3633 -1.0276 0.0005 23 1 1.7651 1.9250 -0.9381 24 1 1.5923 1.9860 0.8324 25 1 3.8544 2.3292 0.1470 26 1 1.6637 -0.2163 -2.1400 27 1 3.1298 -0.7091 -1.2577 28 1 0.4548 -2.1821 -1.2673 29 1 1.9400 -2.6985 -2.1027 30 1 3.1169 -2.8747 0.0593 31 1 1.6418 -3.8720 0.0829 32 1 1.8713 -2.5466 2.1734 33 1 0.4274 -2.0608 1.2529 34 1 1.8356 1.1150 2.2555 35 1 0.6143 -0.1176 2.6518 36 1 2.3618 -1.4990 3.7411 37 1 3.5832 -0.2663 3.3448 38 1 4.2226 -1.0449 6.8867 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723016067.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:27 Heat of formation + Delta-G solvation = -81.225088 kcal Electronic energy + Delta-G solvation = -16990.675781 eV Core-core repulsion = 14445.584390 eV Total energy + Delta-G solvation = -2545.091391 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.03630 -37.19574 -35.92587 -34.31554 -33.33260 -30.96372 -28.34175 -26.96692 -26.52380 -24.63722 -22.40786 -21.68612 -19.28616 -18.45940 -18.15829 -16.90157 -16.64310 -16.33027 -15.79810 -15.46307 -14.81430 -14.43361 -14.15355 -14.04200 -13.83732 -13.71281 -13.18001 -13.09785 -12.92463 -12.77409 -12.44301 -12.34236 -12.07610 -11.80845 -11.68818 -11.35312 -11.26866 -10.98978 -10.96524 -10.61589 -10.49562 -8.93375 -8.19065 -6.31217 1.38429 1.40836 1.51838 2.39863 3.05156 3.13505 3.48527 3.84940 3.90409 4.03950 4.21485 4.40399 4.41483 4.45374 4.53636 4.60629 4.63509 4.69725 4.73297 4.81298 4.96593 5.01220 5.09763 5.12501 5.16484 5.20446 5.31860 5.37704 5.47150 5.61190 5.72439 5.83487 6.17407 6.44004 6.51078 6.86838 7.05751 7.37771 8.93272 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.035024 B = 0.007121 C = 0.006623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.266063 B = 3930.982214 C = 4226.984769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.100 3.900 3 C 0.085 3.915 4 O -0.575 6.575 5 C -0.096 4.096 6 C -0.114 4.114 7 C -0.111 4.111 8 C 0.051 3.949 9 N -0.530 5.530 10 C 0.083 3.917 11 C 0.044 3.956 12 C -0.544 4.544 13 H 0.059 0.941 14 C 0.000 4.000 15 N -0.933 5.933 16 Si 0.968 3.032 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.262 1.262 20 H 0.044 0.956 21 H 0.085 0.915 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.036 0.964 25 H 0.385 0.615 26 H 0.085 0.915 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.044 0.956 33 H 0.037 0.963 34 H 0.064 0.936 35 H 0.015 0.985 36 H -0.015 1.015 37 H -0.015 1.015 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.780 2.119 -15.780 17.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.011 3.989 3 C 0.007 3.993 4 O -0.381 6.381 5 C -0.133 4.133 6 C -0.152 4.152 7 C -0.149 4.149 8 C -0.077 4.077 9 N -0.254 5.254 10 C -0.044 4.044 11 C 0.006 3.994 12 C -0.582 4.582 13 H 0.077 0.923 14 C -0.198 4.198 15 N -0.573 5.573 16 Si 0.792 3.208 17 H -0.197 1.197 18 H -0.206 1.206 19 H -0.186 1.186 20 H 0.063 0.937 21 H 0.104 0.896 22 H 0.087 0.913 23 H 0.091 0.909 24 H 0.054 0.946 25 H 0.233 0.767 26 H 0.103 0.897 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.033 0.967 36 H 0.003 0.997 37 H 0.003 0.997 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.240 1.373 -15.697 16.947 hybrid contribution -0.578 0.854 1.388 1.729 sum -6.818 2.227 -14.309 16.006 Atomic orbital electron populations 1.22418 0.95381 1.02986 1.02681 1.21298 0.92964 0.93207 0.91475 1.22348 0.81719 0.95500 0.99738 1.86627 1.20275 1.34192 1.96978 1.21503 1.00770 0.95656 0.95415 1.21607 1.01114 0.95340 0.97113 1.21553 1.00697 0.98643 0.94012 1.22123 0.97122 0.89635 0.98833 1.62005 1.59955 1.01842 1.01640 1.21941 0.95669 0.97423 0.89367 1.18823 0.94087 0.94406 0.92052 1.21629 1.20252 1.21159 0.95173 0.92295 1.26007 0.94753 0.96243 1.02810 1.70134 1.25441 1.33853 1.27826 0.85410 0.77831 0.79174 0.78378 1.19687 1.20640 1.18592 0.93707 0.89586 0.91275 0.90853 0.94628 0.76691 0.89683 0.92739 0.90939 0.90236 0.93006 0.90290 0.93778 0.94462 0.91795 0.96731 0.99689 0.99683 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.37 7.48 71.98 0.54 -3.83 16 2 C 0.10 2.95 0.46 3.55 0.00 2.96 16 3 C 0.08 2.37 5.22 71.98 0.38 2.74 16 4 O -0.57 -18.31 12.97 -148.98 -1.93 -20.24 16 5 C -0.10 -2.41 4.80 30.64 0.15 -2.26 16 6 C -0.11 -2.59 5.70 30.67 0.17 -2.41 16 7 C -0.11 -3.18 6.09 30.65 0.19 -2.99 16 8 C 0.05 1.83 5.00 86.33 0.43 2.26 16 9 N -0.53 -20.60 4.13 -846.84 -3.50 -24.10 16 10 C 0.08 3.78 3.98 86.30 0.34 4.12 16 11 C 0.04 2.51 5.04 29.85 0.15 2.66 16 12 C -0.54 -32.44 9.11 25.60 0.23 -32.21 16 13 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 14 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 15 N -0.93 -59.19 13.29 21.45 0.28 -58.91 16 16 Si 0.97 45.47 29.54 68.60 2.03 47.50 16 17 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 18 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 19 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 20 H 0.04 1.24 6.96 -2.39 -0.02 1.22 16 21 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.07 1.68 4.80 -2.39 -0.01 1.67 16 23 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.04 1.06 6.32 -2.38 -0.02 1.05 16 25 H 0.39 8.65 9.12 -74.06 -0.68 7.97 16 26 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.05 1.63 7.83 -2.39 -0.02 1.61 16 28 H 0.07 1.45 6.56 -2.38 -0.02 1.44 16 29 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.04 1.88 6.57 -2.39 -0.02 1.87 16 33 H 0.04 1.25 6.19 -2.38 -0.01 1.23 16 34 H 0.06 2.85 5.46 -2.39 -0.01 2.83 16 35 H 0.01 0.65 7.28 -2.39 -0.02 0.63 16 36 H -0.02 -0.94 6.72 -2.39 -0.02 -0.96 16 37 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 38 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -71.77 286.45 0.29 -71.48 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.36 Total: 12.79 kcal Atomic # 6 Polarization: -31.56 SS G_CDS: 3.05 Total: -28.52 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -3.21 Total: -83.01 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -1.93 Total: -20.24 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -71.77 0.29 -71.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723016067.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.746 kcal (2) G-P(sol) polarization free energy of solvation -71.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds