Wall clock time and date at job start Mon Mar 30 2020 02:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47213 * 2 1 4 4 N 1.46902 * 110.56717 * 307.21317 * 3 2 1 5 5 C 1.46903 * 110.99705 * 291.78025 * 4 3 2 6 6 H 1.08993 * 109.47094 * 337.57906 * 5 4 3 7 7 C 1.52994 * 109.47312 * 97.58325 * 5 4 3 8 8 C 1.53007 * 109.46665 * 217.58326 * 5 4 3 9 9 C 1.50704 * 109.47086 * 64.99953 * 8 5 4 10 10 H 1.08007 * 119.99842 * 359.97438 * 9 8 5 11 11 C 1.37870 * 119.99860 * 179.97438 * 9 8 5 12 12 N 1.31509 * 120.00457 * 359.97438 * 11 9 8 13 13 Si 1.86809 * 119.99899 * 179.97438 * 11 9 8 14 14 H 1.48511 * 109.46877 * 89.99992 * 13 11 9 15 15 H 1.48503 * 109.47181 * 209.99577 * 13 11 9 16 16 H 1.48494 * 109.47327 * 330.00005 * 13 11 9 17 17 C 1.54512 * 110.51410 * 184.53121 * 3 2 1 18 18 C 1.54474 * 104.18413 * 241.42545 * 17 3 2 19 19 O 1.44429 * 104.80613 * 23.90965 * 18 17 3 20 20 C 1.44427 * 105.27121 * 319.48585 * 19 18 17 21 21 H 1.09002 * 109.47188 * 304.21339 * 1 2 3 22 22 H 1.09002 * 109.47412 * 64.22031 * 1 2 3 23 23 H 1.09009 * 109.46999 * 184.21415 * 1 2 3 24 24 H 1.09004 * 109.46727 * 240.00204 * 2 1 3 25 25 H 1.08994 * 109.47062 * 120.00543 * 2 1 3 26 26 H 1.00894 * 111.00324 * 167.82033 * 4 3 2 27 27 H 1.09003 * 109.47075 * 173.65142 * 7 5 4 28 28 H 1.08997 * 109.47143 * 293.65696 * 7 5 4 29 29 H 1.09006 * 109.47274 * 53.65776 * 7 5 4 30 30 H 1.08995 * 109.46852 * 184.99950 * 8 5 4 31 31 H 1.08997 * 109.47270 * 305.00146 * 8 5 4 32 32 H 0.97001 * 120.00483 * 180.02562 * 12 11 9 33 33 H 1.09001 * 110.50868 * 122.71152 * 17 3 2 34 34 H 1.09001 * 110.51053 * 0.13898 * 17 3 2 35 35 H 1.08998 * 110.37613 * 142.73909 * 18 17 3 36 36 H 1.08995 * 110.37383 * 264.96962 * 18 17 3 37 37 H 1.09010 * 110.36946 * 159.33995 * 20 19 18 38 38 H 1.09000 * 110.37567 * 281.67909 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 1.4278 2.2063 -1.0953 5 6 1.9039 1.7287 -2.4004 6 1 2.8596 1.2199 -2.2746 7 6 0.8819 0.7555 -2.9913 8 6 2.0805 2.9190 -3.3455 9 6 3.1747 3.8153 -2.8255 10 1 3.6921 3.5617 -1.9120 11 6 3.5151 4.9592 -3.5158 12 7 2.8855 5.2678 -4.6284 13 14 4.8710 6.0707 -2.8709 14 1 6.1750 5.6397 -3.4359 15 1 4.5956 7.4729 -3.2748 16 1 4.9202 5.9829 -1.3893 17 6 3.5806 1.4720 -0.1143 18 6 4.0437 2.1606 1.1886 19 8 2.9669 1.9398 2.1256 20 6 1.7547 2.1213 1.3616 21 1 -0.3634 0.5778 0.8498 22 1 -0.3634 0.4469 -0.9254 23 1 -0.3633 -1.0250 0.0755 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 1.5997 3.1946 -0.9872 27 1 1.1786 0.4886 -4.0056 28 1 0.8389 -0.1436 -2.3767 29 1 -0.1000 1.2284 -3.0126 30 1 2.3478 2.5578 -4.3386 31 1 1.1475 3.4797 -3.4018 32 1 3.1253 6.0724 -5.1143 33 1 3.8879 2.0534 -0.9836 34 1 3.9787 0.4591 -0.1733 35 1 4.9635 1.7034 1.5532 36 1 4.1912 3.2276 1.0222 37 1 0.9162 1.6338 1.8591 38 1 1.5494 3.1827 1.2222 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829178081.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:03 Heat of formation + Delta-G solvation = -59.813390 kcal Electronic energy + Delta-G solvation = -17189.369841 eV Core-core repulsion = 14645.206931 eV Total energy + Delta-G solvation = -2544.162910 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.82853 -36.49370 -33.63768 -32.05318 -30.77009 -29.23386 -27.37432 -26.57261 -23.87350 -23.08300 -21.85309 -19.79687 -18.50913 -16.64232 -16.09393 -15.94472 -15.22210 -14.68813 -14.34354 -14.00920 -13.20549 -12.90291 -12.81801 -12.76532 -12.02405 -11.88374 -11.54655 -11.44743 -11.39657 -11.11831 -10.98414 -10.77510 -10.68213 -10.50642 -10.33139 -10.13070 -10.02815 -9.47914 -9.13836 -9.07346 -8.45196 -7.65723 -6.08244 -4.12077 3.24833 3.32584 3.33531 4.23709 4.37536 4.67628 5.03449 5.11853 5.20058 5.29576 5.45498 5.46947 5.69960 5.80236 5.81754 5.94122 5.99896 6.02145 6.14219 6.20891 6.25529 6.28373 6.31803 6.43090 6.56849 6.61652 6.73099 6.91497 6.97939 6.99374 7.50693 7.60616 7.91900 8.04476 8.23811 8.30929 8.94921 9.52879 11.02410 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025458 B = 0.009899 C = 0.007673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.573244 B = 2827.756988 C = 3648.264201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.100 4.100 3 C 0.090 3.910 4 N -0.666 5.666 5 C 0.084 3.916 6 H 0.042 0.958 7 C -0.141 4.141 8 C 0.015 3.985 9 C -0.527 4.527 10 H 0.055 0.945 11 C 0.062 3.938 12 N -0.889 5.889 13 Si 0.886 3.114 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.274 1.274 17 C -0.195 4.195 18 C 0.046 3.954 19 O -0.382 6.382 20 C 0.052 3.948 21 H 0.048 0.952 22 H 0.076 0.924 23 H 0.039 0.961 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.354 0.646 27 H 0.044 0.956 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.020 0.980 31 H 0.024 0.976 32 H 0.261 0.739 33 H 0.103 0.897 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.092 0.908 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.663 -8.005 8.566 11.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.138 4.138 3 C -0.002 4.002 4 N -0.300 5.300 5 C -0.025 4.025 6 H 0.060 0.940 7 C -0.199 4.199 8 C -0.022 4.022 9 C -0.565 4.565 10 H 0.073 0.927 11 C -0.140 4.140 12 N -0.527 5.527 13 Si 0.714 3.286 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.235 4.235 18 C -0.031 4.031 19 O -0.301 6.301 20 C -0.025 4.025 21 H 0.067 0.933 22 H 0.095 0.905 23 H 0.058 0.942 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.176 0.824 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.039 0.961 31 H 0.042 0.958 32 H 0.071 0.929 33 H 0.121 0.879 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.110 0.890 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.236 -8.286 8.633 12.174 hybrid contribution 1.795 1.154 -0.043 2.134 sum -0.442 -7.132 8.591 11.175 Atomic orbital electron populations 1.21781 0.95302 0.99876 1.03315 1.21518 0.96718 0.94426 1.01142 1.22290 0.90812 0.94939 0.92190 1.60676 1.59864 1.08662 1.00775 1.21663 0.94674 0.97102 0.89032 0.93965 1.22025 1.00094 0.98640 0.99141 1.19384 0.97157 0.91466 0.94194 1.21228 1.19004 1.07195 1.09048 0.92653 1.24981 0.96349 0.97738 0.94913 1.69954 1.41154 1.25695 1.15945 0.86690 0.82431 0.80245 0.79213 1.20737 1.21171 1.19894 1.23923 0.97832 1.01966 0.99731 1.23351 0.90915 0.99875 0.88918 1.89059 1.15431 1.92002 1.33575 1.23590 0.87950 0.99978 0.90956 0.93322 0.90484 0.94240 0.91866 0.92454 0.82412 0.93673 0.93547 0.92795 0.96123 0.95790 0.92918 0.87865 0.91371 0.89824 0.92276 0.88958 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 8.95 37.16 0.33 -1.59 16 2 C -0.10 -1.42 4.12 -26.73 -0.11 -1.53 16 3 C 0.09 1.42 0.61 -129.86 -0.08 1.34 16 4 N -0.67 -11.93 5.24 -91.31 -0.48 -12.41 16 5 C 0.08 1.65 1.72 -67.71 -0.12 1.53 16 6 H 0.04 0.85 5.83 -51.93 -0.30 0.54 16 7 C -0.14 -2.43 7.94 37.15 0.30 -2.14 16 8 C 0.02 0.37 4.47 -27.88 -0.12 0.25 16 9 C -0.53 -13.73 8.09 -34.44 -0.28 -14.01 16 10 H 0.06 1.38 5.49 -52.48 -0.29 1.09 16 11 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 13 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 17 C -0.20 -3.17 5.36 -25.16 -0.13 -3.30 16 18 C 0.05 0.71 7.63 37.93 0.29 1.00 16 19 O -0.38 -6.24 11.65 -35.23 -0.41 -6.65 16 20 C 0.05 0.80 6.73 38.11 0.26 1.05 16 21 H 0.05 0.62 6.62 -51.93 -0.34 0.27 16 22 H 0.08 1.12 5.47 -51.93 -0.28 0.84 16 23 H 0.04 0.46 8.14 -51.92 -0.42 0.04 16 24 H 0.06 0.92 6.34 -51.93 -0.33 0.59 16 25 H 0.06 0.78 8.13 -51.93 -0.42 0.35 16 26 H 0.35 7.07 6.96 -39.29 -0.27 6.80 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.71 4.84 -51.93 -0.25 0.46 16 29 H 0.05 0.94 8.01 -51.93 -0.42 0.52 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.10 1.94 4.32 -51.93 -0.22 1.71 16 34 H 0.07 1.03 7.73 -51.93 -0.40 0.62 16 35 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.09 1.27 6.45 -51.92 -0.34 0.94 16 38 H 0.06 0.97 7.75 -51.93 -0.40 0.57 16 LS Contribution 283.24 15.07 4.27 4.27 Total: -1.00 -27.50 283.24 -6.62 -34.12 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -5.95 Total: 5.64 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: 0.23 Total: -15.78 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.26 Total: -37.48 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -0.41 Total: -6.65 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -27.50 -6.62 -34.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829178081.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.693 kcal (2) G-P(sol) polarization free energy of solvation -27.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds