Wall clock time and date at job start Mon Mar 30 2020 02:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47213 * 2 1 4 4 N 1.46902 * 110.56717 * 307.21317 * 3 2 1 5 5 C 1.46903 * 110.99705 * 291.78025 * 4 3 2 6 6 H 1.08993 * 109.47094 * 337.57906 * 5 4 3 7 7 C 1.52994 * 109.47312 * 97.58325 * 5 4 3 8 8 C 1.53007 * 109.46665 * 217.58326 * 5 4 3 9 9 C 1.50704 * 109.47086 * 64.99953 * 8 5 4 10 10 H 1.08007 * 119.99842 * 359.97438 * 9 8 5 11 11 C 1.37870 * 119.99860 * 179.97438 * 9 8 5 12 12 N 1.31509 * 120.00457 * 359.97438 * 11 9 8 13 13 Si 1.86809 * 119.99899 * 179.97438 * 11 9 8 14 14 H 1.48511 * 109.46877 * 89.99992 * 13 11 9 15 15 H 1.48503 * 109.47181 * 209.99577 * 13 11 9 16 16 H 1.48494 * 109.47327 * 330.00005 * 13 11 9 17 17 C 1.54512 * 110.51410 * 184.53121 * 3 2 1 18 18 C 1.54474 * 104.18413 * 241.42545 * 17 3 2 19 19 O 1.44429 * 104.80613 * 23.90965 * 18 17 3 20 20 C 1.44427 * 105.27121 * 319.48585 * 19 18 17 21 21 H 1.09002 * 109.47188 * 304.21339 * 1 2 3 22 22 H 1.09002 * 109.47412 * 64.22031 * 1 2 3 23 23 H 1.09009 * 109.46999 * 184.21415 * 1 2 3 24 24 H 1.09004 * 109.46727 * 240.00204 * 2 1 3 25 25 H 1.08994 * 109.47062 * 120.00543 * 2 1 3 26 26 H 1.00894 * 111.00324 * 167.82033 * 4 3 2 27 27 H 1.09003 * 109.47075 * 173.65142 * 7 5 4 28 28 H 1.08997 * 109.47143 * 293.65696 * 7 5 4 29 29 H 1.09006 * 109.47274 * 53.65776 * 7 5 4 30 30 H 1.08995 * 109.46852 * 184.99950 * 8 5 4 31 31 H 1.08997 * 109.47270 * 305.00146 * 8 5 4 32 32 H 0.97001 * 120.00483 * 180.02562 * 12 11 9 33 33 H 1.09001 * 110.50868 * 122.71152 * 17 3 2 34 34 H 1.09001 * 110.51053 * 0.13898 * 17 3 2 35 35 H 1.08998 * 110.37613 * 142.73909 * 18 17 3 36 36 H 1.08995 * 110.37383 * 264.96962 * 18 17 3 37 37 H 1.09010 * 110.36946 * 159.33995 * 20 19 18 38 38 H 1.09000 * 110.37567 * 281.67909 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 1.4278 2.2063 -1.0953 5 6 1.9039 1.7287 -2.4004 6 1 2.8596 1.2199 -2.2746 7 6 0.8819 0.7555 -2.9913 8 6 2.0805 2.9190 -3.3455 9 6 3.1747 3.8153 -2.8255 10 1 3.6921 3.5617 -1.9120 11 6 3.5151 4.9592 -3.5158 12 7 2.8855 5.2678 -4.6284 13 14 4.8710 6.0707 -2.8709 14 1 6.1750 5.6397 -3.4359 15 1 4.5956 7.4729 -3.2748 16 1 4.9202 5.9829 -1.3893 17 6 3.5806 1.4720 -0.1143 18 6 4.0437 2.1606 1.1886 19 8 2.9669 1.9398 2.1256 20 6 1.7547 2.1213 1.3616 21 1 -0.3634 0.5778 0.8498 22 1 -0.3634 0.4469 -0.9254 23 1 -0.3633 -1.0250 0.0755 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 1.5997 3.1946 -0.9872 27 1 1.1786 0.4886 -4.0056 28 1 0.8389 -0.1436 -2.3767 29 1 -0.1000 1.2284 -3.0126 30 1 2.3478 2.5578 -4.3386 31 1 1.1475 3.4797 -3.4018 32 1 3.1253 6.0724 -5.1143 33 1 3.8879 2.0534 -0.9836 34 1 3.9787 0.4591 -0.1733 35 1 4.9635 1.7034 1.5532 36 1 4.1912 3.2276 1.0222 37 1 0.9162 1.6338 1.8591 38 1 1.5494 3.1827 1.2222 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829178081.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:02 Heat of formation + Delta-G solvation = -77.595706 kcal Electronic energy + Delta-G solvation = -17190.140940 eV Core-core repulsion = 14645.206931 eV Total energy + Delta-G solvation = -2544.934009 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.12384 -37.95250 -35.32587 -33.79250 -32.02886 -30.56634 -29.27229 -27.86459 -25.03885 -25.03070 -23.09963 -21.31033 -19.89128 -18.56696 -17.46399 -17.29996 -16.74530 -16.33098 -15.79455 -15.33494 -14.67909 -14.38414 -14.21172 -14.09830 -13.58040 -13.45544 -13.24598 -12.90635 -12.71039 -12.61118 -12.55227 -12.36843 -12.23363 -11.94439 -11.89887 -11.41215 -11.31428 -11.01228 -10.97182 -10.64881 -10.57092 -9.13176 -8.18944 -6.28514 1.37590 1.38850 1.47985 2.38709 2.98790 3.14206 3.35268 3.82546 3.84955 3.97851 4.18652 4.24018 4.42509 4.53843 4.65407 4.68421 4.72262 4.75756 4.82095 4.84249 4.94376 5.00740 5.08469 5.12852 5.23443 5.33987 5.37463 5.45571 5.53412 5.56649 5.71375 5.79311 5.87511 6.23383 6.47574 6.65242 6.88322 7.40544 8.92564 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025458 B = 0.009899 C = 0.007673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.573244 B = 2827.756988 C = 3648.264201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 C 0.088 3.912 4 N -0.661 5.661 5 C 0.097 3.903 6 H 0.040 0.960 7 C -0.134 4.134 8 C 0.022 3.978 9 C -0.528 4.528 10 H 0.066 0.934 11 C 0.006 3.994 12 N -0.930 5.930 13 Si 0.952 3.048 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.262 1.262 17 C -0.194 4.194 18 C 0.047 3.953 19 O -0.388 6.388 20 C 0.054 3.946 21 H 0.053 0.947 22 H 0.061 0.939 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.341 0.659 27 H 0.042 0.958 28 H 0.071 0.929 29 H 0.049 0.951 30 H -0.009 1.009 31 H -0.005 1.005 32 H 0.261 0.739 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.049 0.951 37 H 0.111 0.889 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.236 -9.087 10.366 13.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.134 4.134 3 C -0.005 4.005 4 N -0.293 5.293 5 C -0.012 4.012 6 H 0.058 0.942 7 C -0.191 4.191 8 C -0.015 4.015 9 C -0.566 4.566 10 H 0.084 0.916 11 C -0.193 4.193 12 N -0.570 5.570 13 Si 0.778 3.222 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.186 1.186 17 C -0.233 4.233 18 C -0.030 4.030 19 O -0.307 6.307 20 C -0.023 4.023 21 H 0.072 0.928 22 H 0.080 0.920 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.160 0.840 27 H 0.061 0.939 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.010 0.990 31 H 0.014 0.986 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.124 0.876 36 H 0.067 0.933 37 H 0.129 0.871 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.809 -9.391 10.452 14.167 hybrid contribution 1.646 1.466 -0.596 2.283 sum -0.164 -7.925 9.856 12.648 Atomic orbital electron populations 1.21744 0.94467 1.01062 1.02728 1.21507 0.97395 0.92909 1.01616 1.22434 0.90596 0.95837 0.91583 1.60725 1.59899 1.07953 1.00712 1.21429 0.95539 0.95308 0.88922 0.94169 1.21951 0.98961 0.98881 0.99350 1.19257 0.95301 0.92919 0.94023 1.21612 1.18867 1.07105 1.09047 0.91581 1.25837 0.98748 0.99514 0.95165 1.70091 1.43079 1.26399 1.17471 0.85644 0.79458 0.78002 0.79137 1.20289 1.21283 1.18627 1.23852 0.98158 1.02306 0.98975 1.23399 0.91645 0.99452 0.88520 1.89058 1.15794 1.91947 1.33895 1.23629 0.88286 0.99759 0.90653 0.92834 0.91997 0.92357 0.92175 0.91144 0.83961 0.93863 0.91069 0.93155 0.99044 0.98631 0.93010 0.90636 0.90003 0.87573 0.93274 0.87109 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 8.95 71.98 0.64 -2.71 16 2 C -0.10 -2.45 4.12 30.59 0.13 -2.32 16 3 C 0.09 2.60 0.61 4.65 0.00 2.60 16 4 N -0.66 -23.24 5.24 -442.78 -2.32 -25.56 16 5 C 0.10 3.79 1.72 44.92 0.08 3.86 16 6 H 0.04 1.59 5.83 -2.39 -0.01 1.58 16 7 C -0.13 -4.49 7.94 71.98 0.57 -3.92 16 8 C 0.02 1.13 4.47 29.85 0.13 1.26 16 9 C -0.53 -27.91 8.09 25.60 0.21 -27.70 16 10 H 0.07 3.30 5.49 -2.91 -0.02 3.28 16 11 C 0.01 0.31 5.46 84.65 0.46 0.77 16 12 N -0.93 -55.33 13.29 21.44 0.28 -55.05 16 13 Si 0.95 43.12 29.54 68.60 2.03 45.15 16 14 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 15 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 16 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 17 C -0.19 -5.94 5.36 31.61 0.17 -5.77 16 18 C 0.05 1.34 7.63 72.48 0.55 1.89 16 19 O -0.39 -11.72 11.65 -148.98 -1.74 -13.45 16 20 C 0.05 1.52 6.73 72.60 0.49 2.01 16 21 H 0.05 1.20 6.62 -2.39 -0.02 1.18 16 22 H 0.06 1.65 5.47 -2.39 -0.01 1.64 16 23 H 0.06 1.15 8.14 -2.38 -0.02 1.14 16 24 H 0.06 1.57 6.34 -2.38 -0.02 1.56 16 25 H 0.07 1.64 8.13 -2.39 -0.02 1.62 16 26 H 0.34 13.62 6.96 -89.70 -0.62 13.00 16 27 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.07 2.03 4.84 -2.39 -0.01 2.02 16 29 H 0.05 1.72 8.01 -2.38 -0.02 1.70 16 30 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 31 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 32 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 33 H 0.08 2.77 4.32 -2.39 -0.01 2.76 16 34 H 0.08 2.26 7.73 -2.39 -0.02 2.24 16 35 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.05 1.50 8.14 -2.39 -0.02 1.49 16 37 H 0.11 2.72 6.45 -2.38 -0.02 2.71 16 38 H 0.05 1.64 7.75 -2.39 -0.02 1.62 16 Total: -1.00 -58.77 283.24 2.11 -56.66 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.42 Total: 22.28 kcal Atomic # 6 Polarization: -33.46 SS G_CDS: 3.44 Total: -30.03 kcal Atomic # 7 Polarization: -78.57 SS G_CDS: -2.03 Total: -80.60 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -1.74 Total: -13.45 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -58.77 2.11 -56.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829178081.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.938 kcal (2) G-P(sol) polarization free energy of solvation -58.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds