Wall clock time and date at job start Mon Mar 30 2020 03:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46834 * 2 1 4 4 H 1.09003 * 109.50591 * 55.59034 * 3 2 1 5 5 C 1.53097 * 109.54582 * 295.47829 * 3 2 1 6 6 O 1.43018 * 109.25757 * 183.19518 * 5 3 2 7 7 C 1.43104 * 113.76029 * 58.67602 * 6 5 3 8 8 H 1.08995 * 109.49978 * 61.25066 * 7 6 5 9 9 C 1.52999 * 109.56424 * 181.41287 * 7 6 5 10 10 C 1.53095 * 109.20855 * 301.34978 * 7 6 5 11 11 N 1.47012 * 109.50596 * 175.67378 * 3 2 1 12 12 C 1.46900 * 111.00188 * 302.37515 * 11 3 2 13 13 H 1.09006 * 109.47204 * 54.68318 * 12 11 3 14 14 C 1.53001 * 109.47083 * 174.68376 * 12 11 3 15 15 C 1.50698 * 109.47162 * 294.68306 * 12 11 3 16 16 H 1.08006 * 119.99979 * 0.02562 * 15 12 11 17 17 C 1.37874 * 120.00506 * 180.02562 * 15 12 11 18 18 N 1.31524 * 119.99606 * 0.02562 * 17 15 12 19 19 Si 1.86797 * 120.00477 * 180.02562 * 17 15 12 20 20 H 1.48504 * 109.46831 * 59.99583 * 19 17 15 21 21 H 1.48497 * 109.47350 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47211 * 300.00008 * 19 17 15 23 23 H 1.08998 * 109.46889 * 296.56726 * 1 2 3 24 24 H 1.08998 * 109.47161 * 56.56771 * 1 2 3 25 25 H 1.09004 * 109.47250 * 176.57238 * 1 2 3 26 26 H 1.08995 * 109.46839 * 240.00380 * 2 1 3 27 27 H 1.08998 * 109.47041 * 120.00277 * 2 1 3 28 28 H 1.08992 * 109.50938 * 303.13039 * 5 3 2 29 29 H 1.08999 * 109.50454 * 63.26313 * 5 3 2 30 30 H 1.09003 * 109.47266 * 179.75570 * 9 7 6 31 31 H 1.08996 * 109.47498 * 299.75739 * 9 7 6 32 32 H 1.09009 * 109.47668 * 59.75673 * 9 7 6 33 33 H 1.08997 * 109.50903 * 296.87640 * 10 7 6 34 34 H 1.09004 * 109.50767 * 176.78508 * 10 7 6 35 35 H 1.09004 * 109.46993 * 186.88352 * 14 12 11 36 36 H 1.08993 * 109.47332 * 306.88368 * 14 12 11 37 37 H 1.09002 * 109.47246 * 66.88726 * 14 12 11 38 38 H 0.97001 * 119.99434 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6138 1.9792 0.8477 5 6 1.6255 2.1323 -1.3024 6 8 2.1682 3.4552 -1.3289 7 6 3.5952 3.4951 -1.2298 8 1 4.0337 2.9678 -2.0770 9 6 4.0685 4.9501 -1.2321 10 6 4.0288 2.8186 0.0733 11 7 3.5063 1.4448 0.1045 12 6 3.9490 0.7406 1.3154 13 1 3.5241 -0.2632 1.3278 14 6 5.4762 0.6482 1.3222 15 6 3.4861 1.4970 2.5339 16 1 2.9194 2.4094 2.4201 17 6 3.7860 1.0244 3.7939 18 7 4.4765 -0.0864 3.9324 19 14 3.2117 1.9616 5.3042 20 1 1.7293 2.0502 5.2977 21 1 3.6591 1.2499 6.5283 22 1 3.7893 3.3295 5.2873 23 1 -0.3633 0.4596 0.9191 24 1 -0.3633 0.5662 -0.8576 25 1 -0.3634 -1.0259 -0.0614 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.0067 1.5654 -2.1518 29 1 0.5381 2.1838 -1.3569 30 1 5.1552 4.9789 -1.1521 31 1 3.7596 5.4313 -2.1600 32 1 3.6279 5.4769 -0.3855 33 1 3.6344 3.3772 0.9221 34 1 5.1172 2.7954 0.1268 35 1 5.7986 0.0220 2.1541 36 1 5.8178 0.2105 0.3843 37 1 5.9001 1.6463 1.4331 38 1 4.6872 -0.4191 4.8189 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042450734.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:58 Heat of formation + Delta-G solvation = -51.593097 kcal Electronic energy + Delta-G solvation = -17318.991405 eV Core-core repulsion = 14775.184954 eV Total energy + Delta-G solvation = -2543.806451 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.30335 -35.95462 -34.01313 -32.46707 -31.10587 -28.99771 -26.60193 -25.50541 -24.84614 -23.06136 -20.66310 -20.32329 -19.03616 -16.24752 -16.03777 -15.64127 -14.69345 -14.40116 -14.11053 -13.81638 -13.23177 -13.08043 -12.65502 -12.50247 -12.03477 -11.88712 -11.66973 -11.37168 -11.03807 -10.98257 -10.82535 -10.65332 -10.59056 -10.35165 -10.20492 -10.03543 -9.71884 -9.58725 -9.23751 -8.74118 -8.36418 -7.16764 -6.00335 -4.11824 3.27526 3.32530 3.35757 4.22123 4.39441 4.85834 5.24600 5.36459 5.48294 5.55252 5.59164 5.69909 5.76309 5.87770 5.94887 5.99040 6.09356 6.18292 6.26626 6.37039 6.42463 6.50709 6.56183 6.78488 6.87903 6.93044 6.95657 7.03071 7.20419 7.55305 7.68289 7.71217 7.94616 8.14245 8.30054 8.41454 8.96742 9.55442 11.00540 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.022322 B = 0.010558 C = 0.009066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.059204 B = 2651.277908 C = 3087.620431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C 0.058 3.942 4 H 0.053 0.947 5 C 0.069 3.931 6 O -0.391 6.391 7 C 0.085 3.915 8 H 0.056 0.944 9 C -0.141 4.141 10 C 0.033 3.967 11 N -0.533 5.533 12 C 0.203 3.797 13 H 0.047 0.953 14 C -0.128 4.128 15 C -0.541 4.541 16 H 0.054 0.946 17 C 0.069 3.931 18 N -0.887 5.887 19 Si 0.886 3.114 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.278 1.278 23 H 0.053 0.947 24 H 0.048 0.952 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.081 0.919 28 H 0.048 0.952 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.014 0.986 37 H 0.026 0.974 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.097 3.368 -8.412 9.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.051 4.051 4 H 0.071 0.929 5 C -0.007 4.007 6 O -0.311 6.311 7 C 0.028 3.972 8 H 0.074 0.926 9 C -0.199 4.199 10 C -0.096 4.096 11 N -0.258 5.258 12 C 0.097 3.903 13 H 0.065 0.935 14 C -0.186 4.186 15 C -0.580 4.580 16 H 0.072 0.928 17 C -0.133 4.133 18 N -0.525 5.525 19 Si 0.714 3.286 20 H -0.204 1.204 21 H -0.212 1.212 22 H -0.204 1.204 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.100 0.900 28 H 0.066 0.934 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.033 0.967 37 H 0.045 0.955 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.928 3.146 -8.687 9.692 hybrid contribution -0.439 0.679 1.790 1.964 sum -3.367 3.825 -6.897 8.575 Atomic orbital electron populations 1.21799 0.96648 1.00912 1.01342 1.21515 0.94389 0.96356 1.02996 1.22035 0.90424 0.96114 0.96568 0.92902 1.22751 0.97721 0.83181 0.97093 1.87890 1.20887 1.27702 1.94591 1.22239 0.81204 0.96089 0.97715 0.92603 1.21716 1.00865 0.95041 1.02262 1.22578 1.00509 0.90726 0.95764 1.62756 1.07339 1.13953 1.41762 1.19361 0.92519 0.94344 0.84032 0.93519 1.21777 0.97725 0.99873 0.99260 1.21641 1.35063 1.09624 0.91675 0.92751 1.24883 0.94825 0.94840 0.98760 1.69887 1.38775 1.20848 1.23036 0.86753 0.79164 0.80123 0.82553 1.20360 1.21246 1.20360 0.92792 0.93306 0.93163 0.92368 0.90049 0.93382 0.89525 0.91268 0.92429 0.92068 0.93443 0.90538 0.90145 0.96667 0.95454 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.74 37.16 0.36 -1.85 16 2 C -0.11 -2.07 5.25 -26.73 -0.14 -2.21 16 3 C 0.06 1.14 1.78 -67.60 -0.12 1.02 16 4 H 0.05 1.19 6.88 -51.93 -0.36 0.83 16 5 C 0.07 1.19 5.96 37.21 0.22 1.41 16 6 O -0.39 -7.20 10.47 -35.23 -0.37 -7.57 16 7 C 0.09 1.47 3.43 -26.68 -0.09 1.38 16 8 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 9 C -0.14 -2.00 9.57 37.16 0.36 -1.64 16 10 C 0.03 0.66 4.27 -3.71 -0.02 0.65 16 11 N -0.53 -11.44 4.52 -219.79 -0.99 -12.43 16 12 C 0.20 5.00 2.06 -68.87 -0.14 4.86 16 13 H 0.05 1.24 5.89 -51.93 -0.31 0.94 16 14 C -0.13 -3.09 8.47 37.16 0.31 -2.77 16 15 C -0.54 -14.44 7.11 -34.44 -0.24 -14.69 16 16 H 0.05 1.49 5.79 -52.48 -0.30 1.19 16 17 C 0.07 1.89 5.30 -17.82 -0.09 1.79 16 18 N -0.89 -24.82 11.40 55.43 0.63 -24.19 16 19 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.05 0.64 6.47 -51.93 -0.34 0.30 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.08 1.70 6.03 -51.93 -0.31 1.39 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.09 1.30 6.65 -51.93 -0.35 0.96 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 33 H 0.05 1.07 6.46 -51.93 -0.34 0.73 16 34 H 0.08 1.53 6.38 -51.93 -0.33 1.20 16 35 H 0.08 2.11 6.28 -51.93 -0.33 1.78 16 36 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.03 0.64 6.75 -51.93 -0.35 0.29 16 38 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 285.37 15.07 4.30 4.30 Total: -1.00 -27.85 285.37 -7.29 -35.14 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -6.24 Total: 0.58 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: 0.41 Total: -12.06 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: -0.36 Total: -36.62 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -0.37 Total: -7.57 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.85 -7.29 -35.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042450734.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.452 kcal (2) G-P(sol) polarization free energy of solvation -27.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds