Wall clock time and date at job start Mon Mar 30 2020 03:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46834 * 2 1 4 4 H 1.09003 * 109.50591 * 55.59034 * 3 2 1 5 5 C 1.53097 * 109.54582 * 295.47829 * 3 2 1 6 6 O 1.43018 * 109.25757 * 183.19518 * 5 3 2 7 7 C 1.43104 * 113.76029 * 58.67602 * 6 5 3 8 8 H 1.08995 * 109.49978 * 61.25066 * 7 6 5 9 9 C 1.52999 * 109.56424 * 181.41287 * 7 6 5 10 10 C 1.53095 * 109.20855 * 301.34978 * 7 6 5 11 11 N 1.47012 * 109.50596 * 175.67378 * 3 2 1 12 12 C 1.46900 * 111.00188 * 302.37515 * 11 3 2 13 13 H 1.09006 * 109.47204 * 54.68318 * 12 11 3 14 14 C 1.53001 * 109.47083 * 174.68376 * 12 11 3 15 15 C 1.50698 * 109.47162 * 294.68306 * 12 11 3 16 16 H 1.08006 * 119.99979 * 0.02562 * 15 12 11 17 17 C 1.37874 * 120.00506 * 180.02562 * 15 12 11 18 18 N 1.31524 * 119.99606 * 0.02562 * 17 15 12 19 19 Si 1.86797 * 120.00477 * 180.02562 * 17 15 12 20 20 H 1.48504 * 109.46831 * 59.99583 * 19 17 15 21 21 H 1.48497 * 109.47350 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47211 * 300.00008 * 19 17 15 23 23 H 1.08998 * 109.46889 * 296.56726 * 1 2 3 24 24 H 1.08998 * 109.47161 * 56.56771 * 1 2 3 25 25 H 1.09004 * 109.47250 * 176.57238 * 1 2 3 26 26 H 1.08995 * 109.46839 * 240.00380 * 2 1 3 27 27 H 1.08998 * 109.47041 * 120.00277 * 2 1 3 28 28 H 1.08992 * 109.50938 * 303.13039 * 5 3 2 29 29 H 1.08999 * 109.50454 * 63.26313 * 5 3 2 30 30 H 1.09003 * 109.47266 * 179.75570 * 9 7 6 31 31 H 1.08996 * 109.47498 * 299.75739 * 9 7 6 32 32 H 1.09009 * 109.47668 * 59.75673 * 9 7 6 33 33 H 1.08997 * 109.50903 * 296.87640 * 10 7 6 34 34 H 1.09004 * 109.50767 * 176.78508 * 10 7 6 35 35 H 1.09004 * 109.46993 * 186.88352 * 14 12 11 36 36 H 1.08993 * 109.47332 * 306.88368 * 14 12 11 37 37 H 1.09002 * 109.47246 * 66.88726 * 14 12 11 38 38 H 0.97001 * 119.99434 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6138 1.9792 0.8477 5 6 1.6255 2.1323 -1.3024 6 8 2.1682 3.4552 -1.3289 7 6 3.5952 3.4951 -1.2298 8 1 4.0337 2.9678 -2.0770 9 6 4.0685 4.9501 -1.2321 10 6 4.0288 2.8186 0.0733 11 7 3.5063 1.4448 0.1045 12 6 3.9490 0.7406 1.3154 13 1 3.5241 -0.2632 1.3278 14 6 5.4762 0.6482 1.3222 15 6 3.4861 1.4970 2.5339 16 1 2.9194 2.4094 2.4201 17 6 3.7860 1.0244 3.7939 18 7 4.4765 -0.0864 3.9324 19 14 3.2117 1.9616 5.3042 20 1 1.7293 2.0502 5.2977 21 1 3.6591 1.2499 6.5283 22 1 3.7893 3.3295 5.2873 23 1 -0.3633 0.4596 0.9191 24 1 -0.3633 0.5662 -0.8576 25 1 -0.3634 -1.0259 -0.0614 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.0067 1.5654 -2.1518 29 1 0.5381 2.1838 -1.3569 30 1 5.1552 4.9789 -1.1521 31 1 3.7596 5.4313 -2.1600 32 1 3.6279 5.4769 -0.3855 33 1 3.6344 3.3772 0.9221 34 1 5.1172 2.7954 0.1268 35 1 5.7986 0.0220 2.1541 36 1 5.8178 0.2105 0.3843 37 1 5.9001 1.6463 1.4331 38 1 4.6872 -0.4191 4.8189 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042450734.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:58 Heat of formation + Delta-G solvation = -69.557968 kcal Electronic energy + Delta-G solvation = -17319.770421 eV Core-core repulsion = 14775.184954 eV Total energy + Delta-G solvation = -2544.585467 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.85198 -37.59610 -35.58112 -34.33031 -32.55153 -30.77856 -27.99687 -27.39287 -26.63550 -24.46044 -22.20202 -21.96677 -20.78857 -18.19884 -17.53415 -17.25156 -16.56107 -15.95651 -15.61085 -15.32669 -14.97237 -14.76487 -14.20631 -13.95507 -13.41212 -13.24423 -13.17895 -13.08422 -12.91021 -12.70126 -12.48032 -12.26140 -12.15501 -12.09509 -11.94084 -11.62328 -11.49332 -11.18675 -11.07584 -10.51579 -10.24073 -9.01167 -8.07838 -6.27352 1.34131 1.35170 1.42428 2.37187 2.87833 3.12865 3.24751 3.93475 4.08854 4.15989 4.25507 4.29694 4.40639 4.52009 4.64604 4.69798 4.74308 4.85326 4.90463 4.94216 4.99007 5.04094 5.09438 5.17662 5.20047 5.26429 5.31024 5.40949 5.48298 5.54124 5.68436 5.97031 6.16606 6.28917 6.33217 6.58731 6.90658 7.42509 8.89370 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.022322 B = 0.010558 C = 0.009066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.059204 B = 2651.277908 C = 3087.620431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 C 0.057 3.943 4 H 0.017 0.983 5 C 0.074 3.926 6 O -0.401 6.401 7 C 0.088 3.912 8 H 0.068 0.932 9 C -0.136 4.136 10 C 0.035 3.965 11 N -0.532 5.532 12 C 0.208 3.792 13 H 0.023 0.977 14 C -0.116 4.116 15 C -0.546 4.546 16 H 0.041 0.959 17 C 0.025 3.975 18 N -0.910 5.910 19 Si 0.941 3.059 20 H -0.277 1.277 21 H -0.280 1.280 22 H -0.276 1.276 23 H 0.040 0.960 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.043 0.957 28 H 0.063 0.937 29 H 0.112 0.888 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.017 0.983 34 H 0.075 0.925 35 H 0.057 0.943 36 H 0.031 0.969 37 H 0.025 0.975 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.727 4.145 -9.836 11.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.148 4.148 3 C -0.053 4.053 4 H 0.036 0.964 5 C -0.002 4.002 6 O -0.321 6.321 7 C 0.031 3.969 8 H 0.086 0.914 9 C -0.194 4.194 10 C -0.094 4.094 11 N -0.256 5.256 12 C 0.101 3.899 13 H 0.041 0.959 14 C -0.174 4.174 15 C -0.585 4.585 16 H 0.059 0.941 17 C -0.175 4.175 18 N -0.549 5.549 19 Si 0.768 3.232 20 H -0.203 1.203 21 H -0.205 1.205 22 H -0.201 1.201 23 H 0.060 0.940 24 H 0.092 0.908 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.129 0.871 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.035 0.965 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.050 0.950 37 H 0.044 0.956 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.564 3.932 -10.120 11.427 hybrid contribution -0.242 0.418 2.208 2.261 sum -3.805 4.350 -7.912 9.798 Atomic orbital electron populations 1.21750 0.93963 1.02464 1.01809 1.21445 0.96733 0.94917 1.01668 1.22136 0.88996 0.97103 0.97023 0.96448 1.22821 0.99232 0.82622 0.95559 1.87893 1.21463 1.28337 1.94398 1.22329 0.80839 0.97836 0.95939 0.91373 1.21724 1.01887 0.92840 1.02924 1.22617 1.00264 0.89780 0.96698 1.62738 1.08728 1.14563 1.39585 1.19157 0.92621 0.93361 0.84803 0.95887 1.21601 0.97394 0.99323 0.99126 1.21788 1.34712 1.09172 0.92858 0.94127 1.25535 0.95103 0.95666 1.01212 1.69993 1.39551 1.21837 1.23524 0.85875 0.78621 0.79018 0.79720 1.20258 1.20547 1.20105 0.94036 0.90808 0.91379 0.91113 0.93844 0.91846 0.87053 0.89549 0.90376 0.93029 0.96487 0.90679 0.92465 0.94956 0.95580 0.92865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 9.74 71.98 0.70 -3.28 16 2 C -0.11 -3.91 5.25 30.59 0.16 -3.75 16 3 C 0.06 2.21 1.78 44.93 0.08 2.29 16 4 H 0.02 0.80 6.88 -2.39 -0.02 0.79 16 5 C 0.07 2.37 5.96 72.01 0.43 2.80 16 6 O -0.40 -13.90 10.47 -148.98 -1.56 -15.46 16 7 C 0.09 2.87 3.43 30.63 0.11 2.98 16 8 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 9 C -0.14 -3.54 9.57 71.98 0.69 -2.85 16 10 C 0.04 1.41 4.27 86.31 0.37 1.78 16 11 N -0.53 -22.88 4.52 -849.30 -3.84 -26.72 16 12 C 0.21 10.45 2.06 44.17 0.09 10.54 16 13 H 0.02 1.28 5.89 -2.38 -0.01 1.27 16 14 C -0.12 -5.67 8.47 71.98 0.61 -5.06 16 15 C -0.55 -29.98 7.11 25.60 0.18 -29.80 16 16 H 0.04 2.31 5.79 -2.91 -0.02 2.29 16 17 C 0.02 1.38 5.30 84.65 0.45 1.83 16 18 N -0.91 -51.93 11.40 21.45 0.24 -51.68 16 19 Si 0.94 44.18 29.54 68.60 2.03 46.21 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 23 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.07 1.70 6.47 -2.39 -0.02 1.68 16 25 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 26 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.04 1.87 6.03 -2.39 -0.01 1.86 16 28 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.11 2.99 6.65 -2.39 -0.02 2.97 16 30 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.02 0.78 6.46 -2.39 -0.02 0.76 16 34 H 0.07 2.98 6.38 -2.38 -0.02 2.97 16 35 H 0.06 3.05 6.28 -2.38 -0.01 3.04 16 36 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.03 1.22 6.75 -2.39 -0.02 1.21 16 38 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -60.36 285.37 1.75 -58.60 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 1.02 Total: 11.58 kcal Atomic # 6 Polarization: -26.39 SS G_CDS: 3.87 Total: -22.53 kcal Atomic # 7 Polarization: -74.80 SS G_CDS: -3.60 Total: -78.40 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -1.56 Total: -15.46 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -60.36 1.75 -58.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042450734.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.957 kcal (2) G-P(sol) polarization free energy of solvation -60.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds