Wall clock time and date at job start Mon Mar 30 2020 03:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52991 * 109.47094 * 2 1 4 4 H 1.09000 * 109.51081 * 303.30552 * 3 2 1 5 5 C 1.53101 * 109.50753 * 63.43662 * 3 2 1 6 6 O 1.43010 * 109.26045 * 176.78109 * 5 3 2 7 7 C 1.43020 * 113.74178 * 301.33250 * 6 5 3 8 8 H 1.09001 * 109.51079 * 178.60352 * 7 6 5 9 9 C 1.53003 * 109.50365 * 298.73401 * 7 6 5 10 10 C 1.53094 * 109.25838 * 58.66520 * 7 6 5 11 11 N 1.47013 * 109.26168 * 303.15716 * 10 7 6 12 12 C 1.46899 * 111.00150 * 182.39036 * 11 10 7 13 13 H 1.09001 * 109.47067 * 182.17247 * 12 11 10 14 14 C 1.52997 * 109.47099 * 302.17172 * 12 11 10 15 15 C 1.50693 * 109.46982 * 62.17560 * 12 11 10 16 16 H 1.07997 * 120.00285 * 359.97438 * 15 12 11 17 17 C 1.37879 * 120.00040 * 179.97438 * 15 12 11 18 18 N 1.31518 * 120.00138 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 120.00283 * 179.97438 * 17 15 12 20 20 H 1.48505 * 109.47084 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47579 * 120.00184 * 19 17 15 22 22 H 1.48510 * 109.47089 * 239.99965 * 19 17 15 23 23 H 1.09002 * 109.47030 * 174.15794 * 1 2 3 24 24 H 1.08999 * 109.46823 * 54.16115 * 1 2 3 25 25 H 1.08995 * 109.47011 * 294.16147 * 1 2 3 26 26 H 1.09004 * 109.46562 * 120.00104 * 2 1 3 27 27 H 1.08999 * 109.47108 * 239.99883 * 2 1 3 28 28 H 1.08997 * 109.51056 * 296.71749 * 5 3 2 29 29 H 1.09002 * 109.50763 * 56.84962 * 5 3 2 30 30 H 1.08998 * 109.46852 * 179.78120 * 9 7 6 31 31 H 1.09003 * 109.47229 * 299.78286 * 9 7 6 32 32 H 1.09001 * 109.47308 * 59.78198 * 9 7 6 33 33 H 1.09001 * 109.51088 * 183.21808 * 10 7 6 34 34 H 1.09000 * 109.50632 * 63.08914 * 10 7 6 35 35 H 1.09001 * 109.47100 * 60.00095 * 14 12 11 36 36 H 1.09004 * 109.46911 * 180.02562 * 14 12 11 37 37 H 1.09002 * 109.47137 * 300.00233 * 14 12 11 38 38 H 0.96990 * 120.00530 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6295 1.9737 -0.8587 5 6 1.6020 2.1395 1.2908 6 8 2.1443 3.4625 1.3198 7 6 3.5720 3.5014 1.2464 8 1 3.9086 4.5381 1.2487 9 6 4.1656 2.7679 2.4508 10 6 4.0300 2.8181 -0.0448 11 7 3.5081 1.4441 -0.0778 12 6 3.9726 0.7332 -1.2765 13 1 3.5409 -0.2676 -1.2954 14 6 3.5359 1.5007 -2.5259 15 6 5.4758 0.6314 -1.2492 16 1 6.0308 1.0530 -0.4242 17 6 6.1428 -0.0001 -2.2775 18 7 5.4671 -0.5140 -3.2820 19 14 8.0063 -0.1257 -2.2441 20 1 8.5245 0.5276 -1.0153 21 1 8.4063 -1.5557 -2.2513 22 1 8.5696 0.5518 -3.4396 23 1 -0.3633 -1.0223 -0.1046 24 1 -0.3633 0.6017 -0.8331 25 1 -0.3633 0.4206 0.9376 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 0.5138 2.1914 1.3253 29 1 1.9677 1.5775 2.1502 30 1 5.2537 2.7945 2.3922 31 1 3.8392 3.2549 3.3698 32 1 3.8269 1.7319 2.4485 33 1 5.1193 2.7946 -0.0776 34 1 3.6513 3.3719 -0.9038 35 1 3.9675 2.5014 -2.5069 36 1 3.8801 0.9729 -3.4153 37 1 2.4485 1.5743 -2.5455 38 1 5.9362 -0.9585 -4.0052 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042450736.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:00 Heat of formation + Delta-G solvation = -46.832735 kcal Electronic energy + Delta-G solvation = -17383.562183 eV Core-core repulsion = 14839.962157 eV Total energy + Delta-G solvation = -2543.600026 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.58296 -36.07529 -34.00804 -32.44860 -30.77562 -28.77815 -27.06843 -25.29516 -24.98169 -23.65945 -20.93963 -20.27815 -18.29316 -16.51694 -16.10547 -15.45365 -14.78429 -14.39550 -14.21886 -13.96188 -13.38212 -12.98463 -12.74787 -12.49922 -12.12641 -11.93016 -11.57467 -11.46117 -11.09333 -10.97505 -10.81680 -10.67562 -10.59544 -10.40116 -10.32803 -10.05035 -9.96597 -9.61288 -8.88616 -8.79149 -8.35642 -7.13990 -6.02147 -4.05515 3.28480 3.36700 3.40592 4.27314 4.39639 4.83271 5.26654 5.34533 5.41129 5.50404 5.53271 5.60924 5.67856 5.76840 5.86557 5.96423 6.08794 6.19216 6.30400 6.31098 6.35563 6.51455 6.58096 6.69046 6.70744 6.79586 6.83505 6.87707 7.15132 7.47012 7.64208 7.70857 7.82698 8.12394 8.36766 8.58876 9.00375 9.59382 11.04951 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027606 B = 0.009733 C = 0.007999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.045719 B = 2876.183303 C = 3499.678300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C 0.048 3.952 4 H 0.041 0.959 5 C 0.067 3.933 6 O -0.390 6.390 7 C 0.085 3.915 8 H 0.092 0.908 9 C -0.170 4.170 10 C 0.033 3.967 11 N -0.521 5.521 12 C 0.207 3.793 13 H 0.048 0.952 14 C -0.172 4.172 15 C -0.498 4.498 16 H 0.062 0.938 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.895 3.105 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.286 1.286 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.033 0.967 35 H 0.028 0.972 36 H 0.087 0.913 37 H 0.007 0.993 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.187 3.900 7.020 10.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.062 4.062 4 H 0.059 0.941 5 C -0.010 4.010 6 O -0.309 6.309 7 C 0.027 3.973 8 H 0.110 0.890 9 C -0.227 4.227 10 C -0.096 4.096 11 N -0.246 5.246 12 C 0.101 3.899 13 H 0.065 0.935 14 C -0.231 4.231 15 C -0.537 4.537 16 H 0.080 0.920 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.723 3.277 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.212 1.212 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.051 0.949 35 H 0.047 0.953 36 H 0.106 0.894 37 H 0.026 0.974 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.075 3.713 7.285 10.187 hybrid contribution 0.903 0.080 -0.967 1.325 sum -5.172 3.793 6.319 9.003 Atomic orbital electron populations 1.21807 0.96527 1.01242 1.01187 1.21559 0.94334 0.96194 1.03441 1.22211 0.91125 0.96003 0.96839 0.94120 1.22716 0.97500 0.83645 0.97090 1.87933 1.20787 1.27495 1.94651 1.22351 0.80493 0.99254 0.95193 0.88968 1.22222 1.01292 1.02276 0.96940 1.22607 1.01767 0.90116 0.95062 1.62581 1.05230 1.13676 1.43113 1.19382 0.95290 0.92880 0.82304 0.93459 1.22390 0.95758 1.00087 1.04885 1.21142 0.90843 1.35833 1.05856 0.91995 1.24921 0.98316 0.95562 0.95486 1.69890 1.35049 1.38166 1.10228 0.86495 0.85695 0.77691 0.77836 1.19779 1.21100 1.21231 0.92925 0.93030 0.93121 0.91587 0.90556 0.89702 0.92662 0.91896 0.93515 0.90791 0.89108 0.94870 0.95267 0.89417 0.97358 0.93092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.48 37.16 0.35 -1.66 16 2 C -0.12 -1.98 5.23 -26.73 -0.14 -2.12 16 3 C 0.05 0.87 1.74 -67.60 -0.12 0.75 16 4 H 0.04 0.81 6.58 -51.93 -0.34 0.47 16 5 C 0.07 1.09 5.53 37.21 0.21 1.30 16 6 O -0.39 -6.85 10.64 -35.23 -0.37 -7.23 16 7 C 0.08 1.43 3.92 -26.68 -0.10 1.32 16 8 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 9 C -0.17 -2.64 8.89 37.16 0.33 -2.31 16 10 C 0.03 0.65 4.31 -3.71 -0.02 0.64 16 11 N -0.52 -10.94 3.88 -219.80 -0.85 -11.79 16 12 C 0.21 5.08 2.05 -68.87 -0.14 4.94 16 13 H 0.05 1.26 5.89 -51.93 -0.31 0.96 16 14 C -0.17 -4.17 8.26 37.16 0.31 -3.86 16 15 C -0.50 -13.32 7.91 -34.44 -0.27 -13.60 16 16 H 0.06 1.66 6.84 -52.49 -0.36 1.30 16 17 C 0.06 1.58 5.30 -17.82 -0.09 1.48 16 18 N -0.89 -25.15 11.32 55.43 0.63 -24.53 16 19 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.60 6.90 -51.93 -0.36 0.24 16 26 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.08 1.47 6.07 -51.93 -0.32 1.16 16 28 H 0.08 1.20 6.83 -51.93 -0.35 0.84 16 29 H 0.06 0.88 6.49 -51.93 -0.34 0.54 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 1.26 6.12 -51.93 -0.32 0.94 16 33 H 0.09 1.90 6.54 -51.93 -0.34 1.56 16 34 H 0.03 0.69 6.41 -51.93 -0.33 0.36 16 35 H 0.03 0.69 6.42 -51.93 -0.33 0.36 16 36 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 37 H 0.01 0.17 6.60 -51.93 -0.34 -0.17 16 38 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 280.26 15.07 4.22 4.22 Total: -1.00 -27.77 280.26 -7.11 -34.88 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -6.02 Total: 1.43 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: 0.31 Total: -13.12 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: -0.23 Total: -36.32 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -0.37 Total: -7.23 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -27.77 -7.11 -34.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042450736.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.949 kcal (2) G-P(sol) polarization free energy of solvation -27.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds