Wall clock time and date at job start Mon Mar 30 2020 03:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52991 * 109.47094 * 2 1 4 4 H 1.09000 * 109.51081 * 303.30552 * 3 2 1 5 5 C 1.53101 * 109.50753 * 63.43662 * 3 2 1 6 6 O 1.43010 * 109.26045 * 176.78109 * 5 3 2 7 7 C 1.43020 * 113.74178 * 301.33250 * 6 5 3 8 8 H 1.09001 * 109.51079 * 178.60352 * 7 6 5 9 9 C 1.53003 * 109.50365 * 298.73401 * 7 6 5 10 10 C 1.53094 * 109.25838 * 58.66520 * 7 6 5 11 11 N 1.47013 * 109.26168 * 303.15716 * 10 7 6 12 12 C 1.46899 * 111.00150 * 182.39036 * 11 10 7 13 13 H 1.09001 * 109.47067 * 182.17247 * 12 11 10 14 14 C 1.52997 * 109.47099 * 302.17172 * 12 11 10 15 15 C 1.50693 * 109.46982 * 62.17560 * 12 11 10 16 16 H 1.07997 * 120.00285 * 359.97438 * 15 12 11 17 17 C 1.37879 * 120.00040 * 179.97438 * 15 12 11 18 18 N 1.31518 * 120.00138 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 120.00283 * 179.97438 * 17 15 12 20 20 H 1.48505 * 109.47084 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47579 * 120.00184 * 19 17 15 22 22 H 1.48510 * 109.47089 * 239.99965 * 19 17 15 23 23 H 1.09002 * 109.47030 * 174.15794 * 1 2 3 24 24 H 1.08999 * 109.46823 * 54.16115 * 1 2 3 25 25 H 1.08995 * 109.47011 * 294.16147 * 1 2 3 26 26 H 1.09004 * 109.46562 * 120.00104 * 2 1 3 27 27 H 1.08999 * 109.47108 * 239.99883 * 2 1 3 28 28 H 1.08997 * 109.51056 * 296.71749 * 5 3 2 29 29 H 1.09002 * 109.50763 * 56.84962 * 5 3 2 30 30 H 1.08998 * 109.46852 * 179.78120 * 9 7 6 31 31 H 1.09003 * 109.47229 * 299.78286 * 9 7 6 32 32 H 1.09001 * 109.47308 * 59.78198 * 9 7 6 33 33 H 1.09001 * 109.51088 * 183.21808 * 10 7 6 34 34 H 1.09000 * 109.50632 * 63.08914 * 10 7 6 35 35 H 1.09001 * 109.47100 * 60.00095 * 14 12 11 36 36 H 1.09004 * 109.46911 * 180.02562 * 14 12 11 37 37 H 1.09002 * 109.47137 * 300.00233 * 14 12 11 38 38 H 0.96990 * 120.00530 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6295 1.9737 -0.8587 5 6 1.6020 2.1395 1.2908 6 8 2.1443 3.4625 1.3198 7 6 3.5720 3.5014 1.2464 8 1 3.9086 4.5381 1.2487 9 6 4.1656 2.7679 2.4508 10 6 4.0300 2.8181 -0.0448 11 7 3.5081 1.4441 -0.0778 12 6 3.9726 0.7332 -1.2765 13 1 3.5409 -0.2676 -1.2954 14 6 3.5359 1.5007 -2.5259 15 6 5.4758 0.6314 -1.2492 16 1 6.0308 1.0530 -0.4242 17 6 6.1428 -0.0001 -2.2775 18 7 5.4671 -0.5140 -3.2820 19 14 8.0063 -0.1257 -2.2441 20 1 8.5245 0.5276 -1.0153 21 1 8.4063 -1.5557 -2.2513 22 1 8.5696 0.5518 -3.4396 23 1 -0.3633 -1.0223 -0.1046 24 1 -0.3633 0.6017 -0.8331 25 1 -0.3633 0.4206 0.9376 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 0.5138 2.1914 1.3253 29 1 1.9677 1.5775 2.1502 30 1 5.2537 2.7945 2.3922 31 1 3.8392 3.2549 3.3698 32 1 3.8269 1.7319 2.4485 33 1 5.1193 2.7946 -0.0776 34 1 3.6513 3.3719 -0.9038 35 1 3.9675 2.5014 -2.5069 36 1 3.8801 0.9729 -3.4153 37 1 2.4485 1.5743 -2.5455 38 1 5.9362 -0.9585 -4.0052 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042450736.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:59 Heat of formation + Delta-G solvation = -64.354488 kcal Electronic energy + Delta-G solvation = -17384.321983 eV Core-core repulsion = 14839.962157 eV Total energy + Delta-G solvation = -2544.359827 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.07457 -37.67434 -35.54551 -34.27963 -32.24476 -30.46270 -28.46916 -27.35608 -26.52988 -25.06500 -22.55065 -21.82568 -19.83561 -18.40002 -17.63647 -17.04389 -16.51885 -15.96179 -15.78413 -15.40952 -14.86663 -14.69222 -14.29183 -13.89904 -13.68303 -13.54355 -13.04633 -12.97218 -12.74589 -12.61021 -12.58254 -12.34605 -12.05989 -12.00275 -11.97468 -11.90060 -11.49618 -11.03429 -10.81594 -10.50990 -10.26245 -8.85865 -8.10744 -6.20679 1.40118 1.42539 1.53528 2.42109 2.95008 3.18294 3.26231 3.92130 4.04174 4.14927 4.19389 4.27352 4.37826 4.50046 4.61719 4.70017 4.72019 4.75670 4.85074 4.87804 4.95494 5.00265 5.08170 5.13385 5.18031 5.20719 5.35843 5.42234 5.49353 5.55683 5.70539 5.78582 6.19887 6.28945 6.46274 6.73497 6.92708 7.48099 8.95680 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027606 B = 0.009733 C = 0.007999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.045719 B = 2876.183303 C = 3499.678300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C 0.046 3.954 4 H 0.024 0.976 5 C 0.072 3.928 6 O -0.396 6.396 7 C 0.089 3.911 8 H 0.116 0.884 9 C -0.163 4.163 10 C 0.034 3.966 11 N -0.525 5.525 12 C 0.213 3.787 13 H 0.022 0.978 14 C -0.156 4.156 15 C -0.510 4.510 16 H 0.057 0.943 17 C 0.011 3.989 18 N -0.921 5.921 19 Si 0.957 3.043 20 H -0.267 1.267 21 H -0.282 1.282 22 H -0.284 1.284 23 H 0.064 0.936 24 H 0.049 0.951 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.043 0.957 28 H 0.113 0.887 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.018 0.982 35 H 0.025 0.975 36 H 0.061 0.939 37 H 0.019 0.981 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.599 4.599 8.634 11.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C -0.063 4.063 4 H 0.042 0.958 5 C -0.005 4.005 6 O -0.315 6.315 7 C 0.031 3.969 8 H 0.133 0.867 9 C -0.220 4.220 10 C -0.094 4.094 11 N -0.249 5.249 12 C 0.106 3.894 13 H 0.040 0.960 14 C -0.216 4.216 15 C -0.549 4.549 16 H 0.075 0.925 17 C -0.187 4.187 18 N -0.561 5.561 19 Si 0.783 3.217 20 H -0.191 1.191 21 H -0.208 1.208 22 H -0.210 1.210 23 H 0.083 0.917 24 H 0.069 0.931 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.061 0.939 28 H 0.131 0.869 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.036 0.964 35 H 0.044 0.956 36 H 0.080 0.920 37 H 0.038 0.962 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.496 4.420 8.915 11.883 hybrid contribution 0.997 -0.137 -1.472 1.783 sum -5.499 4.283 7.443 10.197 Atomic orbital electron populations 1.21754 0.93454 1.02365 1.02399 1.21498 0.96977 0.94843 1.01804 1.22345 0.89174 0.97068 0.97703 0.95813 1.22804 0.99070 0.82971 0.95636 1.87934 1.20934 1.28123 1.94483 1.22405 0.80416 1.00292 0.93788 0.86683 1.22149 1.01317 1.01276 0.97271 1.22616 1.00780 0.89475 0.96568 1.62503 1.07227 1.14243 1.40933 1.19118 0.94260 0.92195 0.83788 0.96032 1.22188 0.96296 0.99335 1.03751 1.21399 0.92127 1.35655 1.05686 0.92469 1.25669 1.02527 0.95341 0.95212 1.70016 1.36606 1.38770 1.10748 0.85523 0.80636 0.77617 0.77939 1.19089 1.20835 1.20960 0.91678 0.93137 0.90772 0.91533 0.93866 0.86890 0.91871 0.91727 0.91180 0.92385 0.90713 0.96408 0.95581 0.92048 0.96241 0.93092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 9.48 71.98 0.68 -2.83 16 2 C -0.11 -3.77 5.23 30.59 0.16 -3.61 16 3 C 0.05 1.66 1.74 44.92 0.08 1.74 16 4 H 0.02 0.94 6.58 -2.39 -0.02 0.93 16 5 C 0.07 2.14 5.53 72.02 0.40 2.54 16 6 O -0.40 -12.87 10.64 -148.98 -1.59 -14.45 16 7 C 0.09 2.80 3.92 30.63 0.12 2.92 16 8 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 9 C -0.16 -4.68 8.89 71.98 0.64 -4.04 16 10 C 0.03 1.35 4.31 86.31 0.37 1.72 16 11 N -0.52 -22.12 3.88 -849.32 -3.30 -25.42 16 12 C 0.21 10.74 2.05 44.17 0.09 10.83 16 13 H 0.02 1.21 5.89 -2.39 -0.01 1.20 16 14 C -0.16 -7.81 8.26 71.98 0.59 -7.22 16 15 C -0.51 -27.77 7.91 25.60 0.20 -27.57 16 16 H 0.06 3.10 6.84 -2.91 -0.02 3.08 16 17 C 0.01 0.59 5.30 84.65 0.45 1.04 16 18 N -0.92 -52.96 11.32 21.45 0.24 -52.72 16 19 Si 0.96 43.68 29.54 68.60 2.03 45.71 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 23 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.07 1.50 6.90 -2.39 -0.02 1.48 16 26 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 27 H 0.04 1.71 6.07 -2.39 -0.01 1.70 16 28 H 0.11 2.76 6.83 -2.39 -0.02 2.74 16 29 H 0.06 1.82 6.49 -2.39 -0.02 1.80 16 30 H 0.06 1.82 8.14 -2.39 -0.02 1.81 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 32 H 0.06 1.86 6.12 -2.39 -0.01 1.84 16 33 H 0.07 3.15 6.54 -2.39 -0.02 3.13 16 34 H 0.02 0.74 6.41 -2.39 -0.02 0.73 16 35 H 0.03 1.26 6.42 -2.39 -0.02 1.25 16 36 H 0.06 3.39 6.07 -2.39 -0.01 3.38 16 37 H 0.02 0.88 6.60 -2.39 -0.02 0.86 16 38 H 0.26 14.25 8.31 -92.72 -0.77 13.48 16 Total: -1.00 -59.70 280.26 2.21 -57.50 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 1.03 Total: 13.87 kcal Atomic # 6 Polarization: -28.27 SS G_CDS: 3.79 Total: -24.48 kcal Atomic # 7 Polarization: -75.09 SS G_CDS: -3.05 Total: -78.14 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -1.59 Total: -14.45 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -59.70 2.21 -57.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042450736.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.858 kcal (2) G-P(sol) polarization free energy of solvation -59.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds