Wall clock time and date at job start Mon Mar 30 2020 03:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47164 * 2 1 4 4 H 1.08999 * 109.47004 * 177.69476 * 3 2 1 5 5 C 1.50701 * 109.46775 * 297.69852 * 3 2 1 6 6 H 1.07998 * 119.99929 * 119.99600 * 5 3 2 7 7 C 1.37874 * 119.99755 * 299.99638 * 5 3 2 8 8 N 1.31513 * 120.00399 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99729 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.46967 * 90.00067 * 9 7 5 11 11 H 1.48506 * 109.46627 * 210.00060 * 9 7 5 12 12 H 1.48501 * 109.47080 * 329.99891 * 9 7 5 13 13 N 1.46902 * 109.46737 * 57.69667 * 3 2 1 14 14 C 1.46906 * 110.99414 * 185.10229 * 13 3 2 15 15 C 1.46896 * 111.00501 * 61.14807 * 13 3 2 16 16 C 1.52997 * 109.47521 * 195.64102 * 15 13 3 17 17 H 1.09007 * 109.81766 * 305.56528 * 16 15 13 18 18 C 1.54376 * 109.83144 * 184.58773 * 16 15 13 19 19 C 1.55310 * 102.25147 * 219.12641 * 18 16 15 20 20 C 1.54939 * 100.94097 * 34.13243 * 19 18 16 21 21 O 1.43239 * 109.83065 * 66.44774 * 16 15 13 22 22 H 1.08999 * 109.47259 * 295.89381 * 1 2 3 23 23 H 1.08993 * 109.47054 * 55.89887 * 1 2 3 24 24 H 1.09005 * 109.47011 * 175.89570 * 1 2 3 25 25 H 1.09003 * 109.46923 * 119.99787 * 2 1 3 26 26 H 1.08997 * 109.47224 * 239.99629 * 2 1 3 27 27 H 0.96999 * 120.00056 * 180.02562 * 8 7 5 28 28 H 1.08993 * 109.47283 * 60.00006 * 14 13 3 29 29 H 1.09000 * 109.46782 * 180.02562 * 14 13 3 30 30 H 1.08994 * 109.46873 * 299.99616 * 14 13 3 31 31 H 1.09003 * 109.46607 * 315.63807 * 15 13 3 32 32 H 1.08999 * 109.47144 * 75.63698 * 15 13 3 33 33 H 1.09004 * 110.85005 * 337.31744 * 18 16 15 34 34 H 1.09004 * 110.84894 * 100.93586 * 18 16 15 35 35 H 1.08994 * 111.12536 * 276.21091 * 19 18 16 36 36 H 1.08995 * 111.15846 * 152.06903 * 19 18 16 37 37 H 1.08998 * 110.31085 * 204.64189 * 20 19 18 38 38 H 1.09001 * 110.31372 * 82.47071 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1292 1.4428 0.0413 5 6 1.5848 2.1362 -1.2580 6 1 0.9607 3.0154 -1.1943 7 6 1.9650 1.6485 -2.4903 8 7 2.7245 0.5777 -2.5679 9 14 1.4012 2.5088 -4.0497 10 1 2.3946 3.5449 -4.4302 11 1 1.2778 1.5149 -5.1462 12 1 0.0831 3.1503 -3.8123 13 7 1.5054 2.1509 1.1707 14 6 1.8754 3.5722 1.1401 15 6 1.9518 1.5174 2.4186 16 6 1.0895 2.0151 3.5802 17 1 1.1042 3.1047 3.6111 18 6 1.6238 1.4443 4.9113 19 6 0.3140 1.1242 5.6821 20 6 -0.6157 0.6986 4.5180 21 8 -0.2564 1.5518 3.4196 22 1 -0.3634 0.4488 0.9245 23 1 -0.3633 0.5761 -0.8509 24 1 -0.3633 -1.0251 -0.0736 25 1 1.8933 -0.5138 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 2.9923 0.2348 -3.4349 28 1 1.4723 4.0333 0.2385 29 1 1.4673 4.0728 2.0182 30 1 2.9613 3.6650 1.1413 31 1 1.8546 0.4352 2.3316 32 1 2.9946 1.7748 2.6039 33 1 2.2042 0.5377 4.7395 34 1 2.2149 2.1896 5.4435 35 1 -0.0703 2.0098 6.1881 36 1 0.4619 0.3056 6.3862 37 1 -1.6594 0.8533 4.7914 38 1 -0.4427 -0.3458 4.2581 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042464084.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:17 Heat of formation + Delta-G solvation = -63.454644 kcal Electronic energy + Delta-G solvation = -16985.452241 eV Core-core repulsion = 14441.131434 eV Total energy + Delta-G solvation = -2544.320807 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.47364 -38.58873 -34.99060 -33.03093 -32.80920 -31.14919 -28.28027 -27.51435 -25.57764 -23.88820 -22.50187 -21.82052 -20.54403 -18.13541 -17.84636 -17.08563 -16.62843 -15.90583 -15.71018 -15.53122 -14.84730 -14.48328 -14.16131 -13.96264 -13.60383 -13.57718 -12.92901 -12.80183 -12.68645 -12.50223 -12.47110 -12.17717 -12.10578 -11.95926 -11.70580 -11.67410 -11.39771 -11.22762 -10.72811 -10.45847 -10.26886 -8.77117 -8.07116 -6.16922 1.41302 1.42965 1.53332 2.43996 3.02565 3.21123 3.49435 3.69580 3.95883 4.04905 4.25319 4.43064 4.46338 4.60784 4.63496 4.74298 4.77067 4.78699 4.86388 4.89113 4.96530 4.96810 5.05067 5.12404 5.19823 5.34116 5.37531 5.45526 5.53972 5.76127 5.79278 5.91748 6.30423 6.36309 6.47608 6.83827 6.97209 7.50727 8.98688 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.045185 B = 0.007116 C = 0.006856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.523825 B = 3933.852354 C = 4082.876937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.103 4.103 3 C 0.223 3.777 4 H -0.046 1.046 5 C -0.506 4.506 6 H 0.057 0.943 7 C 0.012 3.988 8 N -0.921 5.921 9 Si 0.954 3.046 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.270 1.270 13 N -0.533 5.533 14 C 0.041 3.959 15 C 0.041 3.959 16 C 0.090 3.910 17 H 0.075 0.925 18 C -0.147 4.147 19 C -0.143 4.143 20 C 0.036 3.964 21 O -0.389 6.389 22 H 0.054 0.946 23 H 0.032 0.968 24 H 0.031 0.969 25 H 0.024 0.976 26 H 0.061 0.939 27 H 0.260 0.740 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.004 0.996 31 H 0.064 0.936 32 H 0.031 0.969 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.156 1.054 15.056 15.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.141 4.141 3 C 0.116 3.884 4 H -0.029 1.029 5 C -0.544 4.544 6 H 0.075 0.925 7 C -0.186 4.186 8 N -0.561 5.561 9 Si 0.780 3.220 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.195 1.195 13 N -0.256 5.256 14 C -0.107 4.107 15 C -0.088 4.088 16 C 0.032 3.968 17 H 0.092 0.908 18 C -0.185 4.185 19 C -0.180 4.180 20 C -0.041 4.041 21 O -0.308 6.308 22 H 0.073 0.927 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.042 0.958 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.023 0.977 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.105 0.895 36 H 0.119 0.881 37 H 0.110 0.890 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.718 0.963 14.722 15.215 hybrid contribution 1.107 0.202 -1.096 1.571 sum -2.611 1.165 13.626 13.923 Atomic orbital electron populations 1.21289 0.95796 0.98132 1.01105 1.21406 0.96355 0.97492 0.98835 1.19052 0.89719 0.91807 0.87856 1.02856 1.21330 1.30470 1.11740 0.90858 0.92527 1.25640 0.95391 0.95712 1.01833 1.70014 1.37394 1.23699 1.25004 0.85620 0.78771 0.78261 0.79387 1.20258 1.20979 1.19460 1.61984 1.59701 1.02255 1.01701 1.22214 0.96760 0.90044 1.01704 1.22589 0.95677 0.99619 0.90877 1.22764 0.82191 0.98293 0.93549 0.90768 1.23170 0.98827 1.02356 0.94171 1.23220 0.93955 1.03212 0.97637 1.23574 1.00159 0.94229 0.86114 1.88564 1.29308 1.66369 1.46605 0.92663 0.94847 0.94964 0.95782 0.92045 0.93114 0.92418 0.91009 0.97703 0.91714 0.95121 0.90501 0.88388 0.89536 0.88051 0.88991 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.96 9.52 71.98 0.69 -4.27 16 2 C -0.10 -5.18 5.16 30.60 0.16 -5.03 16 3 C 0.22 11.70 1.76 44.17 0.08 11.78 16 4 H -0.05 -2.72 8.14 -2.39 -0.02 -2.73 16 5 C -0.51 -28.37 6.71 25.60 0.17 -28.20 16 6 H 0.06 3.19 6.31 -2.91 -0.02 3.17 16 7 C 0.01 0.70 5.30 84.65 0.45 1.15 16 8 N -0.92 -54.11 11.30 21.45 0.24 -53.87 16 9 Si 0.95 44.74 29.54 68.60 2.03 46.77 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 13 N -0.53 -23.74 3.77 -901.47 -3.40 -27.14 16 14 C 0.04 1.67 9.06 127.69 1.16 2.83 16 15 C 0.04 1.52 4.37 86.30 0.38 1.90 16 16 C 0.09 2.70 3.57 31.06 0.11 2.81 16 17 H 0.07 2.20 6.52 -2.38 -0.02 2.19 16 18 C -0.15 -3.10 6.54 31.85 0.21 -2.90 16 19 C -0.14 -2.51 7.16 32.05 0.23 -2.28 16 20 C 0.04 0.85 7.78 72.65 0.56 1.41 16 21 O -0.39 -13.03 10.99 -148.98 -1.64 -14.67 16 22 H 0.05 2.53 7.68 -2.39 -0.02 2.51 16 23 H 0.03 1.68 7.15 -2.39 -0.02 1.66 16 24 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 25 H 0.02 1.12 6.24 -2.39 -0.01 1.10 16 26 H 0.06 3.47 6.01 -2.39 -0.01 3.45 16 27 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 28 H 0.06 2.52 6.17 -2.39 -0.01 2.51 16 29 H 0.07 2.45 6.47 -2.39 -0.02 2.43 16 30 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.06 2.55 5.73 -2.39 -0.01 2.53 16 32 H 0.03 1.11 8.06 -2.39 -0.02 1.09 16 33 H 0.08 1.63 7.85 -2.39 -0.02 1.61 16 34 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 35 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -64.02 291.48 2.44 -61.58 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 1.01 Total: 8.12 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: 4.19 Total: -20.79 kcal Atomic # 7 Polarization: -77.86 SS G_CDS: -3.16 Total: -81.01 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -1.64 Total: -14.67 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -64.02 2.44 -61.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042464084.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.874 kcal (2) G-P(sol) polarization free energy of solvation -64.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds