Wall clock time and date at job start Mon Mar 30 2020 03:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46893 * 2 1 4 4 H 1.09000 * 109.46886 * 306.04129 * 3 2 1 5 5 C 1.50698 * 109.46908 * 186.04849 * 3 2 1 6 6 H 1.08003 * 120.00088 * 242.92719 * 5 3 2 7 7 C 1.37876 * 120.00158 * 62.92361 * 5 3 2 8 8 N 1.31517 * 120.00020 * 195.72980 * 7 5 3 9 9 Si 1.86798 * 120.00055 * 15.73649 * 7 5 3 10 10 H 1.48500 * 109.47394 * 94.85017 * 9 7 5 11 11 H 1.48504 * 109.46952 * 214.85133 * 9 7 5 12 12 H 1.48502 * 109.46927 * 334.84911 * 9 7 5 13 13 N 1.46893 * 109.47499 * 66.04432 * 3 2 1 14 14 C 1.46899 * 111.00400 * 258.75310 * 13 3 2 15 15 C 1.52998 * 109.47420 * 176.56034 * 14 13 3 16 16 H 1.09008 * 110.01371 * 54.29934 * 15 14 13 17 17 C 1.54262 * 110.03514 * 292.91084 * 15 14 13 18 18 C 1.54959 * 104.16349 * 217.13598 * 17 15 14 19 19 C 1.54891 * 102.77719 * 37.88318 * 18 17 15 20 20 C 1.53876 * 110.03261 * 175.69099 * 15 14 13 21 21 H 1.09005 * 110.02735 * 238.57398 * 20 15 14 22 22 O 1.42892 * 110.03286 * 0.02562 * 20 15 14 23 23 H 1.09000 * 109.46905 * 295.86154 * 1 2 3 24 24 H 1.09000 * 109.47227 * 55.85914 * 1 2 3 25 25 H 1.09006 * 109.46935 * 175.86375 * 1 2 3 26 26 H 1.08998 * 109.46846 * 239.99837 * 2 1 3 27 27 H 1.09004 * 109.47047 * 119.99737 * 2 1 3 28 28 H 0.97002 * 120.00128 * 179.97438 * 8 7 5 29 29 H 1.00905 * 110.99767 * 22.70859 * 13 3 2 30 30 H 1.08999 * 109.46908 * 56.55905 * 14 13 3 31 31 H 1.08997 * 109.46998 * 296.56740 * 14 13 3 32 32 H 1.09004 * 110.48440 * 335.78028 * 17 15 14 33 33 H 1.09005 * 110.49150 * 98.41934 * 17 15 14 34 34 H 1.09000 * 110.72153 * 279.57564 * 18 17 15 35 35 H 1.08994 * 110.76837 * 156.22092 * 18 17 15 36 36 H 1.08996 * 110.48795 * 203.40970 * 19 18 17 37 37 H 1.09006 * 110.59518 * 80.82032 * 19 18 17 38 38 H 0.96698 * 114.00490 * 179.97438 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5910 1.9866 -0.8310 5 6 3.5395 1.4451 -0.1497 6 1 4.1604 1.8423 0.6398 7 6 4.1190 0.9405 -1.2945 8 7 5.4024 0.6540 -1.3106 9 14 3.0811 0.6639 -2.8228 10 1 3.1857 1.8477 -3.7132 11 1 3.5692 -0.5406 -3.5413 12 1 1.6632 0.4647 -2.4288 13 7 1.6731 2.0916 1.2656 14 6 0.5008 2.9597 1.0916 15 6 0.0976 3.5495 2.4445 16 1 0.9508 4.0503 2.9024 17 6 -0.4212 2.4332 3.3743 18 6 -1.5799 3.1003 4.1576 19 6 -2.2456 3.9985 3.0857 20 6 -1.0616 4.5447 2.2613 21 1 -0.7713 5.5282 2.6310 22 8 -1.4230 4.6264 0.8812 23 1 -0.3633 0.4483 0.9248 24 1 -0.3634 0.5767 -0.8505 25 1 -0.3633 -1.0251 -0.0741 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 5.8100 0.2987 -2.1159 29 1 1.5121 1.4074 1.9895 30 1 -0.3268 2.3761 0.6885 31 1 0.7459 3.7671 0.4016 32 1 -0.7914 1.5911 2.7895 33 1 0.3647 2.1089 4.0565 34 1 -1.1932 3.7022 4.9799 35 1 -2.2814 2.3503 4.5230 36 1 -2.7909 4.8157 3.5578 37 1 -2.9120 3.4115 2.4535 38 1 -2.1497 5.2383 0.7005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084237664.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:52 Heat of formation + Delta-G solvation = -65.624189 kcal Electronic energy + Delta-G solvation = -16703.648232 eV Core-core repulsion = 14159.233347 eV Total energy + Delta-G solvation = -2544.414885 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.11720 -36.50182 -34.90719 -32.44075 -31.43472 -28.97525 -27.57897 -26.76413 -23.34314 -22.12832 -20.92029 -19.87278 -19.24905 -17.39273 -16.49354 -15.71365 -14.90336 -14.73424 -14.47291 -14.06362 -13.69205 -12.98618 -12.81041 -12.69685 -12.27019 -12.04645 -11.71014 -11.60836 -11.19528 -11.06522 -10.96960 -10.75333 -10.52766 -10.50849 -10.33167 -10.04223 -9.83908 -9.80716 -9.29278 -9.18984 -8.28715 -7.15152 -5.97669 -3.88054 3.34584 3.44028 3.47475 4.28387 4.52026 4.54877 4.61270 4.93230 5.18753 5.29410 5.33194 5.44330 5.58708 5.63710 5.69872 5.80829 5.85782 5.92409 5.93626 6.07765 6.10683 6.14719 6.23164 6.30897 6.52928 6.59211 6.72457 6.77330 6.88371 7.01539 7.29866 7.72346 7.88452 8.10798 8.53230 8.84557 9.20141 9.70240 11.15989 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.038317 B = 0.006915 C = 0.006848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.571669 B = 4048.322598 C = 4087.990194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.148 4.148 3 C 0.193 3.807 4 H 0.023 0.977 5 C -0.497 4.497 6 H 0.079 0.921 7 C 0.069 3.931 8 N -0.897 5.897 9 Si 0.859 3.141 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.254 1.254 13 N -0.676 5.676 14 C 0.077 3.923 15 C -0.086 4.086 16 H 0.086 0.914 17 C -0.121 4.121 18 C -0.122 4.122 19 C -0.158 4.158 20 C 0.104 3.896 21 H 0.055 0.945 22 O -0.556 6.556 23 H 0.046 0.954 24 H 0.045 0.955 25 H 0.039 0.961 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.261 0.739 29 H 0.323 0.677 30 H 0.028 0.972 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.225 5.171 8.115 18.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.188 4.188 3 C 0.084 3.916 4 H 0.041 0.959 5 C -0.535 4.535 6 H 0.097 0.903 7 C -0.132 4.132 8 N -0.536 5.536 9 Si 0.686 3.314 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.179 1.179 13 N -0.306 5.306 14 C -0.052 4.052 15 C -0.105 4.105 16 H 0.104 0.896 17 C -0.159 4.159 18 C -0.160 4.160 19 C -0.195 4.195 20 C 0.044 3.956 21 H 0.073 0.927 22 O -0.360 6.360 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.140 0.860 30 H 0.046 0.954 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -15.123 5.179 7.860 17.813 hybrid contribution -1.633 -0.432 -0.970 1.948 sum -16.755 4.747 6.890 18.728 Atomic orbital electron populations 1.21966 0.98520 0.99946 1.00667 1.22599 0.92752 1.01707 1.01713 1.19542 0.96525 0.88097 0.87443 0.95921 1.21036 0.89393 1.39276 1.03791 0.90279 1.24908 0.94729 0.94922 0.98595 1.69985 1.11526 1.43894 1.28176 0.87276 0.82233 0.77638 0.84238 1.20907 1.21539 1.17858 1.60678 1.35179 1.25337 1.09393 1.21781 0.91870 0.96827 0.94736 1.21884 0.96016 0.95233 0.97375 0.89610 1.22486 0.97543 0.97905 0.97950 1.22415 0.97663 0.98563 0.97354 1.23126 0.98329 0.99717 0.98376 1.22505 0.93981 0.97857 0.81218 0.92694 1.86680 1.56574 1.67685 1.25108 0.93505 0.93582 0.94185 0.92288 0.92548 0.92939 0.86001 0.95433 0.91303 0.91564 0.91035 0.91476 0.91688 0.91900 0.90797 0.78511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 8.76 37.16 0.33 -2.50 16 2 C -0.15 -3.28 4.48 -26.73 -0.12 -3.40 16 3 C 0.19 4.69 1.73 -68.87 -0.12 4.57 16 4 H 0.02 0.58 6.36 -51.93 -0.33 0.25 16 5 C -0.50 -14.43 9.29 -34.44 -0.32 -14.75 16 6 H 0.08 2.53 8.06 -52.48 -0.42 2.11 16 7 C 0.07 2.05 5.32 -17.82 -0.09 1.96 16 8 N -0.90 -28.04 13.96 55.43 0.77 -27.26 16 9 Si 0.86 21.83 25.72 -169.99 -4.37 17.46 16 10 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.25 -6.10 5.47 56.52 0.31 -5.79 16 13 N -0.68 -14.29 6.10 -107.96 -0.66 -14.95 16 14 C 0.08 1.42 3.45 -3.83 -0.01 1.41 16 15 C -0.09 -1.25 3.15 -89.50 -0.28 -1.53 16 16 H 0.09 1.29 8.14 -51.92 -0.42 0.87 16 17 C -0.12 -1.52 5.48 -25.04 -0.14 -1.66 16 18 C -0.12 -1.23 6.91 -24.70 -0.17 -1.40 16 19 C -0.16 -1.57 6.56 -25.07 -0.16 -1.73 16 20 C 0.10 1.25 4.24 -25.61 -0.11 1.14 16 21 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 22 O -0.56 -7.17 11.43 -35.23 -0.40 -7.57 16 23 H 0.05 0.79 5.85 -51.93 -0.30 0.49 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 1.39 4.82 -51.93 -0.25 1.14 16 27 H 0.06 1.22 8.01 -51.93 -0.42 0.80 16 28 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 29 H 0.32 6.33 7.15 -39.29 -0.28 6.05 16 30 H 0.03 0.51 5.74 -51.93 -0.30 0.22 16 31 H 0.07 1.41 7.68 -51.93 -0.40 1.01 16 32 H 0.07 0.89 7.13 -51.93 -0.37 0.52 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 38 H 0.37 3.01 9.11 45.56 0.42 3.42 16 LS Contribution 287.69 15.07 4.34 4.34 Total: -1.00 -31.88 287.69 -7.21 -39.09 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -5.69 Total: 6.80 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -1.20 Total: -17.90 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.12 Total: -42.21 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -0.40 Total: -7.57 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.37 Total: 17.46 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.88 -7.21 -39.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084237664.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.534 kcal (2) G-P(sol) polarization free energy of solvation -31.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds