Wall clock time and date at job start Mon Mar 30 2020 03:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46893 * 2 1 4 4 H 1.09000 * 109.46886 * 306.04129 * 3 2 1 5 5 C 1.50698 * 109.46908 * 186.04849 * 3 2 1 6 6 H 1.08003 * 120.00088 * 242.92719 * 5 3 2 7 7 C 1.37876 * 120.00158 * 62.92361 * 5 3 2 8 8 N 1.31517 * 120.00020 * 195.72980 * 7 5 3 9 9 Si 1.86798 * 120.00055 * 15.73649 * 7 5 3 10 10 H 1.48500 * 109.47394 * 94.85017 * 9 7 5 11 11 H 1.48504 * 109.46952 * 214.85133 * 9 7 5 12 12 H 1.48502 * 109.46927 * 334.84911 * 9 7 5 13 13 N 1.46893 * 109.47499 * 66.04432 * 3 2 1 14 14 C 1.46899 * 111.00400 * 258.75310 * 13 3 2 15 15 C 1.52998 * 109.47420 * 176.56034 * 14 13 3 16 16 H 1.09008 * 110.01371 * 54.29934 * 15 14 13 17 17 C 1.54262 * 110.03514 * 292.91084 * 15 14 13 18 18 C 1.54959 * 104.16349 * 217.13598 * 17 15 14 19 19 C 1.54891 * 102.77719 * 37.88318 * 18 17 15 20 20 C 1.53876 * 110.03261 * 175.69099 * 15 14 13 21 21 H 1.09005 * 110.02735 * 238.57398 * 20 15 14 22 22 O 1.42892 * 110.03286 * 0.02562 * 20 15 14 23 23 H 1.09000 * 109.46905 * 295.86154 * 1 2 3 24 24 H 1.09000 * 109.47227 * 55.85914 * 1 2 3 25 25 H 1.09006 * 109.46935 * 175.86375 * 1 2 3 26 26 H 1.08998 * 109.46846 * 239.99837 * 2 1 3 27 27 H 1.09004 * 109.47047 * 119.99737 * 2 1 3 28 28 H 0.97002 * 120.00128 * 179.97438 * 8 7 5 29 29 H 1.00905 * 110.99767 * 22.70859 * 13 3 2 30 30 H 1.08999 * 109.46908 * 56.55905 * 14 13 3 31 31 H 1.08997 * 109.46998 * 296.56740 * 14 13 3 32 32 H 1.09004 * 110.48440 * 335.78028 * 17 15 14 33 33 H 1.09005 * 110.49150 * 98.41934 * 17 15 14 34 34 H 1.09000 * 110.72153 * 279.57564 * 18 17 15 35 35 H 1.08994 * 110.76837 * 156.22092 * 18 17 15 36 36 H 1.08996 * 110.48795 * 203.40970 * 19 18 17 37 37 H 1.09006 * 110.59518 * 80.82032 * 19 18 17 38 38 H 0.96698 * 114.00490 * 179.97438 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5910 1.9866 -0.8310 5 6 3.5395 1.4451 -0.1497 6 1 4.1604 1.8423 0.6398 7 6 4.1190 0.9405 -1.2945 8 7 5.4024 0.6540 -1.3106 9 14 3.0811 0.6639 -2.8228 10 1 3.1857 1.8477 -3.7132 11 1 3.5692 -0.5406 -3.5413 12 1 1.6632 0.4647 -2.4288 13 7 1.6731 2.0916 1.2656 14 6 0.5008 2.9597 1.0916 15 6 0.0976 3.5495 2.4445 16 1 0.9508 4.0503 2.9024 17 6 -0.4212 2.4332 3.3743 18 6 -1.5799 3.1003 4.1576 19 6 -2.2456 3.9985 3.0857 20 6 -1.0616 4.5447 2.2613 21 1 -0.7713 5.5282 2.6310 22 8 -1.4230 4.6264 0.8812 23 1 -0.3633 0.4483 0.9248 24 1 -0.3634 0.5767 -0.8505 25 1 -0.3633 -1.0251 -0.0741 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 5.8100 0.2987 -2.1159 29 1 1.5121 1.4074 1.9895 30 1 -0.3268 2.3761 0.6885 31 1 0.7459 3.7671 0.4016 32 1 -0.7914 1.5911 2.7895 33 1 0.3647 2.1089 4.0565 34 1 -1.1932 3.7022 4.9799 35 1 -2.2814 2.3503 4.5230 36 1 -2.7909 4.8157 3.5578 37 1 -2.9120 3.4115 2.4535 38 1 -2.1497 5.2383 0.7005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084237664.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:52 Heat of formation + Delta-G solvation = -90.285489 kcal Electronic energy + Delta-G solvation = -16704.717626 eV Core-core repulsion = 14159.233347 eV Total energy + Delta-G solvation = -2545.484279 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.18400 -38.15065 -35.91892 -34.46414 -33.07415 -30.43904 -28.53542 -28.48226 -24.96379 -23.75319 -21.97377 -21.50340 -20.43339 -18.90399 -18.17085 -16.98128 -16.45810 -16.31600 -15.73845 -15.39531 -14.89047 -14.75284 -14.40634 -14.16785 -13.50866 -13.47189 -13.32731 -13.13316 -12.67424 -12.54736 -12.37966 -12.17269 -11.89107 -11.71814 -11.62648 -11.45866 -11.39809 -11.32240 -11.09217 -10.69689 -10.52073 -8.88468 -8.27332 -6.22875 1.31395 1.36104 1.45810 2.35972 3.05270 3.39207 3.49656 3.69383 3.86320 4.09579 4.26144 4.34889 4.42094 4.45835 4.49159 4.52746 4.66380 4.70355 4.82144 4.86528 4.93693 5.04322 5.08708 5.15535 5.17721 5.20843 5.22953 5.31825 5.42322 5.50280 5.54344 5.75002 6.11069 6.75657 6.81763 6.87510 7.04586 7.40108 8.90288 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.038317 B = 0.006915 C = 0.006848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.571669 B = 4048.322598 C = 4087.990194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.146 4.146 3 C 0.199 3.801 4 H 0.013 0.987 5 C -0.507 4.507 6 H 0.031 0.969 7 C 0.014 3.986 8 N -0.945 5.945 9 Si 0.927 3.073 10 H -0.282 1.282 11 H -0.283 1.283 12 H -0.230 1.230 13 N -0.688 5.688 14 C 0.087 3.913 15 C -0.089 4.089 16 H 0.074 0.926 17 C -0.121 4.121 18 C -0.116 4.116 19 C -0.148 4.148 20 C 0.104 3.896 21 H 0.067 0.933 22 O -0.580 6.580 23 H 0.060 0.940 24 H 0.042 0.958 25 H 0.065 0.935 26 H 0.045 0.955 27 H 0.055 0.945 28 H 0.264 0.736 29 H 0.333 0.667 30 H 0.030 0.970 31 H 0.041 0.959 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.395 5.115 8.463 21.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.186 4.186 3 C 0.089 3.911 4 H 0.031 0.969 5 C -0.545 4.545 6 H 0.049 0.951 7 C -0.183 4.183 8 N -0.586 5.586 9 Si 0.751 3.249 10 H -0.208 1.208 11 H -0.209 1.209 12 H -0.153 1.153 13 N -0.319 5.319 14 C -0.042 4.042 15 C -0.108 4.108 16 H 0.092 0.908 17 C -0.159 4.159 18 C -0.154 4.154 19 C -0.186 4.186 20 C 0.045 3.955 21 H 0.085 0.915 22 O -0.388 6.388 23 H 0.079 0.921 24 H 0.062 0.938 25 H 0.084 0.916 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.151 0.849 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -18.330 5.138 8.228 20.739 hybrid contribution -0.555 -0.351 -1.000 1.197 sum -18.886 4.787 7.228 20.780 Atomic orbital electron populations 1.21856 0.95133 1.01787 1.01315 1.22445 0.95707 0.99357 1.01043 1.19318 0.93283 0.89928 0.88555 0.96872 1.21324 0.91879 1.38664 1.02676 0.95075 1.25745 0.95937 0.94727 1.01900 1.70125 1.13689 1.45482 1.29277 0.86184 0.81670 0.77550 0.79522 1.20836 1.20890 1.15287 1.60495 1.37338 1.25693 1.08350 1.21676 0.90462 0.95364 0.96695 1.21895 0.97039 0.96523 0.95384 0.90806 1.22459 0.98593 0.97087 0.97725 1.22417 0.96749 0.98869 0.97349 1.23058 0.97355 1.00311 0.97848 1.22517 0.93892 0.97714 0.81420 0.91521 1.86616 1.57853 1.68698 1.25651 0.92142 0.93841 0.91582 0.93681 0.92629 0.92718 0.84945 0.95170 0.94024 0.92285 0.91219 0.90361 0.90272 0.89451 0.91049 0.76169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.85 8.76 71.98 0.63 -4.22 16 2 C -0.15 -6.27 4.48 30.60 0.14 -6.13 16 3 C 0.20 9.70 1.73 44.17 0.08 9.77 16 4 H 0.01 0.68 6.36 -2.39 -0.02 0.66 16 5 C -0.51 -30.46 9.29 25.60 0.24 -30.23 16 6 H 0.03 2.11 8.06 -2.91 -0.02 2.08 16 7 C 0.01 0.84 5.32 84.65 0.45 1.29 16 8 N -0.95 -60.93 13.96 21.45 0.30 -60.63 16 9 Si 0.93 45.44 25.72 68.60 1.76 47.20 16 10 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 11 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 12 H -0.23 -10.28 5.47 99.48 0.54 -9.74 16 13 N -0.69 -29.31 6.10 -495.48 -3.02 -32.33 16 14 C 0.09 3.16 3.45 86.30 0.30 3.45 16 15 C -0.09 -2.49 3.15 -10.07 -0.03 -2.52 16 16 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 17 C -0.12 -2.80 5.48 31.69 0.17 -2.63 16 18 C -0.12 -1.95 6.91 31.91 0.22 -1.73 16 19 C -0.15 -2.41 6.56 31.67 0.21 -2.21 16 20 C 0.10 2.26 4.24 31.32 0.13 2.39 16 21 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 22 O -0.58 -13.88 11.43 -148.98 -1.70 -15.58 16 23 H 0.06 1.87 5.85 -2.39 -0.01 1.85 16 24 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 26 H 0.04 2.04 4.82 -2.39 -0.01 2.03 16 27 H 0.05 2.36 8.01 -2.38 -0.02 2.34 16 28 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 29 H 0.33 12.97 7.15 -89.69 -0.64 12.33 16 30 H 0.03 1.08 5.74 -2.39 -0.01 1.07 16 31 H 0.04 1.72 7.68 -2.39 -0.02 1.70 16 32 H 0.06 1.45 7.13 -2.39 -0.02 1.43 16 33 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 36 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.07 1.23 8.08 -2.38 -0.02 1.21 16 38 H 0.39 5.44 9.11 -74.06 -0.67 4.77 16 Total: -1.00 -70.85 287.69 -0.56 -71.41 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: -0.44 Total: 22.68 kcal Atomic # 6 Polarization: -35.29 SS G_CDS: 2.53 Total: -32.75 kcal Atomic # 7 Polarization: -90.23 SS G_CDS: -2.72 Total: -92.95 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -1.70 Total: -15.58 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.76 Total: 47.20 kcal Total: -70.85 -0.56 -71.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084237664.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.878 kcal (2) G-P(sol) polarization free energy of solvation -70.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds