Wall clock time and date at job start Mon Mar 30 2020 03:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47232 * 2 1 4 4 H 1.09001 * 109.46992 * 306.09650 * 3 2 1 5 5 C 1.50700 * 109.47354 * 186.09976 * 3 2 1 6 6 H 1.07996 * 120.00208 * 274.98763 * 5 3 2 7 7 C 1.37883 * 120.00295 * 94.98132 * 5 3 2 8 8 N 1.31508 * 120.00187 * 184.83745 * 7 5 3 9 9 Si 1.86800 * 119.99641 * 4.84471 * 7 5 3 10 10 H 1.48498 * 109.47486 * 84.86045 * 9 7 5 11 11 H 1.48507 * 109.47035 * 204.85922 * 9 7 5 12 12 H 1.48497 * 109.47270 * 324.86050 * 9 7 5 13 13 N 1.46893 * 109.47238 * 66.10018 * 3 2 1 14 14 C 1.47479 * 110.99964 * 180.02562 * 13 3 2 15 15 C 1.53517 * 87.93274 * 138.70130 * 14 13 3 16 16 O 1.42900 * 114.17251 * 87.62143 * 15 14 13 17 17 C 1.52998 * 114.16875 * 220.32324 * 15 14 13 18 18 C 1.53006 * 109.47143 * 179.97438 * 17 15 14 19 19 C 1.52991 * 109.47625 * 300.00133 * 17 15 14 20 20 C 1.47485 * 110.99742 * 275.97254 * 13 3 2 21 21 H 1.08994 * 109.46795 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46988 * 300.00070 * 1 2 3 23 23 H 1.09006 * 109.47094 * 60.00195 * 1 2 3 24 24 H 1.09004 * 109.47369 * 239.99885 * 2 1 3 25 25 H 1.08998 * 109.47582 * 120.00227 * 2 1 3 26 26 H 0.97001 * 120.00211 * 180.02562 * 8 7 5 27 27 H 1.09004 * 113.47549 * 253.46498 * 14 13 3 28 28 H 1.08993 * 113.48182 * 23.93592 * 14 13 3 29 29 H 0.96703 * 113.99875 * 309.67263 * 16 15 14 30 30 H 1.09006 * 109.47055 * 60.00148 * 17 15 14 31 31 H 1.09006 * 109.46760 * 60.00291 * 18 17 15 32 32 H 1.08991 * 109.47162 * 180.02562 * 18 17 15 33 33 H 1.08998 * 109.47194 * 300.00506 * 18 17 15 34 34 H 1.08997 * 109.46949 * 299.99973 * 19 17 15 35 35 H 1.09002 * 109.47165 * 60.00072 * 19 17 15 36 36 H 1.09004 * 109.47631 * 179.97438 * 19 17 15 37 37 H 1.08997 * 113.47476 * 336.05690 * 20 13 3 38 38 H 1.08999 * 113.47826 * 106.53465 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5903 1.9869 -0.8304 5 6 3.5394 1.4452 -0.1510 6 1 4.1699 1.3319 0.7185 7 6 4.1065 1.5922 -1.3992 8 7 5.4102 1.4995 -1.5443 9 14 3.0226 1.9233 -2.8842 10 1 2.7557 3.3804 -2.9873 11 1 3.7127 1.4582 -4.1142 12 1 1.7379 1.1943 -2.7317 13 7 1.6743 2.0912 1.2662 14 6 2.1502 3.4866 1.3019 15 6 0.8092 3.8690 1.9439 16 8 0.7902 3.7596 3.3686 17 6 0.2198 5.1833 1.4280 18 6 -1.1087 5.4589 2.1351 19 6 1.1961 6.3265 1.7123 20 6 0.2990 2.6211 1.2105 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 5.8092 1.6033 -2.4223 27 1 3.0055 3.6370 1.9606 28 1 2.2975 3.9207 0.3130 29 1 1.1127 2.9112 3.7022 30 1 0.0506 5.1088 0.3537 31 1 -0.9399 5.5333 3.2095 32 1 -1.5288 6.3949 1.7673 33 1 -1.8041 4.6444 1.9322 34 1 1.3653 6.4011 2.7864 35 1 2.1424 6.1300 1.2082 36 1 0.7764 7.2628 1.3443 37 1 -0.0474 2.8242 0.1972 38 1 -0.4150 2.0377 1.7919 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084376614.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:07 Heat of formation + Delta-G solvation = -27.195817 kcal Electronic energy + Delta-G solvation = -17116.592086 eV Core-core repulsion = 14573.843580 eV Total energy + Delta-G solvation = -2542.748506 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.31661 -36.02128 -34.00053 -33.12371 -31.98394 -28.47418 -27.19732 -25.48872 -24.80362 -22.86784 -21.04915 -19.45860 -19.18733 -17.09389 -16.20086 -15.17228 -14.84746 -14.41845 -14.25340 -13.84369 -13.37594 -12.88734 -12.70807 -12.57418 -12.45965 -12.02807 -12.01004 -11.85583 -11.49466 -11.22302 -11.01153 -10.92046 -10.82419 -10.67447 -10.28988 -9.95751 -9.84859 -9.39926 -9.11906 -9.05622 -8.63919 -7.96842 -6.15828 -4.15506 3.18328 3.28680 3.29494 4.32143 4.47258 4.69415 4.73953 5.00721 5.17587 5.34202 5.53388 5.55741 5.82231 5.86231 5.90784 5.91441 6.00858 6.04184 6.05935 6.08743 6.15737 6.20668 6.38900 6.42401 6.47367 6.54599 6.61542 6.64353 6.72453 6.91190 7.09500 7.41527 7.71903 7.87781 8.03164 8.53326 8.94315 9.47169 10.97271 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026651 B = 0.009632 C = 0.008588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.378006 B = 2906.352288 C = 3259.428632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.106 4.106 3 C 0.155 3.845 4 H 0.010 0.990 5 C -0.508 4.508 6 H 0.079 0.921 7 C 0.074 3.926 8 N -0.894 5.894 9 Si 0.868 3.132 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.264 1.264 13 N -0.463 5.463 14 C 0.001 3.999 15 C 0.106 3.894 16 O -0.539 6.539 17 C -0.072 4.072 18 C -0.138 4.138 19 C -0.145 4.145 20 C -0.036 4.036 21 H 0.039 0.961 22 H 0.057 0.943 23 H 0.039 0.961 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.265 0.735 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.384 0.616 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.318 5.449 4.431 13.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.145 4.145 3 C 0.047 3.953 4 H 0.028 0.972 5 C -0.546 4.546 6 H 0.097 0.903 7 C -0.128 4.128 8 N -0.532 5.532 9 Si 0.695 3.305 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.189 1.189 13 N -0.186 5.186 14 C -0.128 4.128 15 C 0.064 3.936 16 O -0.345 6.345 17 C -0.091 4.091 18 C -0.195 4.195 19 C -0.202 4.202 20 C -0.165 4.165 21 H 0.058 0.942 22 H 0.076 0.924 23 H 0.058 0.942 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.232 0.768 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.173 5.532 4.732 13.335 hybrid contribution -0.338 -0.085 -1.805 1.839 sum -11.511 5.447 2.926 13.067 Atomic orbital electron populations 1.22091 0.98626 1.00100 1.00962 1.21643 0.92493 0.99018 1.01328 1.20265 0.96985 0.91628 0.86388 0.97200 1.20883 0.88763 1.50007 0.94948 0.90288 1.25000 0.94758 0.94643 0.98438 1.69886 1.09885 1.49611 1.23827 0.87000 0.81411 0.79054 0.83037 1.20225 1.21250 1.18918 1.68870 1.01956 1.12378 1.35377 1.24179 0.97214 0.90720 1.00678 1.22426 0.96188 0.93547 0.81432 1.86287 1.87829 1.41600 1.18788 1.20987 0.95617 0.93132 0.99329 1.21681 0.96066 1.00435 1.01336 1.21782 0.99200 0.96947 1.02257 1.24742 0.95763 0.96013 0.99994 0.94220 0.92375 0.94230 0.92747 0.92154 0.92536 0.90199 0.91069 0.76771 0.90488 0.91857 0.93381 0.93048 0.92147 0.92294 0.93113 0.91764 0.90306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.18 37.16 0.34 -2.48 16 2 C -0.11 -2.26 5.59 -26.73 -0.15 -2.41 16 3 C 0.15 3.56 1.02 -68.87 -0.07 3.49 16 4 H 0.01 0.24 4.67 -51.93 -0.24 0.00 16 5 C -0.51 -13.91 8.23 -34.44 -0.28 -14.19 16 6 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 7 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 8 N -0.89 -26.85 13.96 55.43 0.77 -26.07 16 9 Si 0.87 21.08 26.99 -169.99 -4.59 16.49 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.26 -6.19 6.82 56.52 0.39 -5.81 16 13 N -0.46 -9.29 5.94 -238.12 -1.41 -10.71 16 14 C 0.00 0.03 5.33 -7.59 -0.04 -0.01 16 15 C 0.11 1.68 1.12 -90.11 -0.10 1.58 16 16 O -0.54 -8.26 12.66 -35.23 -0.45 -8.71 16 17 C -0.07 -1.00 2.64 -90.62 -0.24 -1.24 16 18 C -0.14 -1.69 8.94 37.16 0.33 -1.36 16 19 C -0.14 -1.91 9.00 37.15 0.33 -1.58 16 20 C -0.04 -0.60 4.90 -7.61 -0.04 -0.64 16 21 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.06 0.96 5.11 -51.93 -0.27 0.69 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 26 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 27 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 28 H 0.07 1.47 7.85 -51.93 -0.41 1.06 16 29 H 0.38 5.33 8.82 45.56 0.40 5.73 16 30 H 0.08 1.07 7.90 -51.93 -0.41 0.66 16 31 H 0.06 0.81 7.61 -51.93 -0.40 0.42 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.83 7.48 -51.93 -0.39 0.44 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 1.10 7.32 -51.93 -0.38 0.72 16 38 H 0.08 1.24 6.84 -51.93 -0.36 0.88 16 LS Contribution 295.25 15.07 4.45 4.45 Total: -1.00 -29.02 295.25 -7.06 -36.08 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -5.82 Total: 5.31 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -0.01 Total: -16.85 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: -0.64 Total: -36.78 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.45 Total: -8.71 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.59 Total: 16.49 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.02 -7.06 -36.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084376614.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.886 kcal (2) G-P(sol) polarization free energy of solvation -29.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds