Wall clock time and date at job start Mon Mar 30 2020 03:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47232 * 2 1 4 4 H 1.09001 * 109.46992 * 306.09650 * 3 2 1 5 5 C 1.50700 * 109.47354 * 186.09976 * 3 2 1 6 6 H 1.07996 * 120.00208 * 274.98763 * 5 3 2 7 7 C 1.37883 * 120.00295 * 94.98132 * 5 3 2 8 8 N 1.31508 * 120.00187 * 184.83745 * 7 5 3 9 9 Si 1.86800 * 119.99641 * 4.84471 * 7 5 3 10 10 H 1.48498 * 109.47486 * 84.86045 * 9 7 5 11 11 H 1.48507 * 109.47035 * 204.85922 * 9 7 5 12 12 H 1.48497 * 109.47270 * 324.86050 * 9 7 5 13 13 N 1.46893 * 109.47238 * 66.10018 * 3 2 1 14 14 C 1.47479 * 110.99964 * 180.02562 * 13 3 2 15 15 C 1.53517 * 87.93274 * 138.70130 * 14 13 3 16 16 O 1.42900 * 114.17251 * 87.62143 * 15 14 13 17 17 C 1.52998 * 114.16875 * 220.32324 * 15 14 13 18 18 C 1.53006 * 109.47143 * 179.97438 * 17 15 14 19 19 C 1.52991 * 109.47625 * 300.00133 * 17 15 14 20 20 C 1.47485 * 110.99742 * 275.97254 * 13 3 2 21 21 H 1.08994 * 109.46795 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46988 * 300.00070 * 1 2 3 23 23 H 1.09006 * 109.47094 * 60.00195 * 1 2 3 24 24 H 1.09004 * 109.47369 * 239.99885 * 2 1 3 25 25 H 1.08998 * 109.47582 * 120.00227 * 2 1 3 26 26 H 0.97001 * 120.00211 * 180.02562 * 8 7 5 27 27 H 1.09004 * 113.47549 * 253.46498 * 14 13 3 28 28 H 1.08993 * 113.48182 * 23.93592 * 14 13 3 29 29 H 0.96703 * 113.99875 * 309.67263 * 16 15 14 30 30 H 1.09006 * 109.47055 * 60.00148 * 17 15 14 31 31 H 1.09006 * 109.46760 * 60.00291 * 18 17 15 32 32 H 1.08991 * 109.47162 * 180.02562 * 18 17 15 33 33 H 1.08998 * 109.47194 * 300.00506 * 18 17 15 34 34 H 1.08997 * 109.46949 * 299.99973 * 19 17 15 35 35 H 1.09002 * 109.47165 * 60.00072 * 19 17 15 36 36 H 1.09004 * 109.47631 * 179.97438 * 19 17 15 37 37 H 1.08997 * 113.47476 * 336.05690 * 20 13 3 38 38 H 1.08999 * 113.47826 * 106.53465 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5903 1.9869 -0.8304 5 6 3.5394 1.4452 -0.1510 6 1 4.1699 1.3319 0.7185 7 6 4.1065 1.5922 -1.3992 8 7 5.4102 1.4995 -1.5443 9 14 3.0226 1.9233 -2.8842 10 1 2.7557 3.3804 -2.9873 11 1 3.7127 1.4582 -4.1142 12 1 1.7379 1.1943 -2.7317 13 7 1.6743 2.0912 1.2662 14 6 2.1502 3.4866 1.3019 15 6 0.8092 3.8690 1.9439 16 8 0.7902 3.7596 3.3686 17 6 0.2198 5.1833 1.4280 18 6 -1.1087 5.4589 2.1351 19 6 1.1961 6.3265 1.7123 20 6 0.2990 2.6211 1.2105 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 5.8092 1.6033 -2.4223 27 1 3.0055 3.6370 1.9606 28 1 2.2975 3.9207 0.3130 29 1 1.1127 2.9112 3.7022 30 1 0.0506 5.1088 0.3537 31 1 -0.9399 5.5333 3.2095 32 1 -1.5288 6.3949 1.7673 33 1 -1.8041 4.6444 1.9322 34 1 1.3653 6.4011 2.7864 35 1 2.1424 6.1300 1.2082 36 1 0.7764 7.2628 1.3443 37 1 -0.0474 2.8242 0.1972 38 1 -0.4150 2.0377 1.7919 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084376614.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:07 Heat of formation + Delta-G solvation = -49.677008 kcal Electronic energy + Delta-G solvation = -17117.566943 eV Core-core repulsion = 14573.843580 eV Total energy + Delta-G solvation = -2543.723363 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.76940 -37.50993 -35.14829 -34.88458 -33.83906 -30.19131 -28.26643 -27.10213 -26.24933 -24.56621 -22.40390 -21.05777 -20.53561 -19.18812 -17.70723 -16.63944 -16.41968 -16.06062 -15.56355 -15.18258 -14.80621 -14.68049 -14.17082 -14.03030 -13.81259 -13.68680 -13.40029 -12.94914 -12.90848 -12.78615 -12.64828 -12.53153 -11.92483 -11.89057 -11.83110 -11.72704 -11.63360 -11.00094 -10.91388 -10.72955 -10.46167 -9.59116 -8.34503 -6.38544 1.25940 1.28742 1.38704 2.26965 2.96765 3.24864 3.29689 3.42457 3.74783 4.18138 4.27324 4.33743 4.41936 4.42794 4.52593 4.59848 4.65591 4.72423 4.79743 4.88666 4.89724 4.93341 5.02709 5.07693 5.12691 5.19204 5.29855 5.30164 5.39921 5.45039 5.57317 5.71966 5.75631 6.03173 6.53212 6.69206 6.81760 7.27971 8.82681 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026651 B = 0.009632 C = 0.008588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.378006 B = 2906.352288 C = 3259.428632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.107 4.107 3 C 0.160 3.840 4 H 0.010 0.990 5 C -0.507 4.507 6 H 0.029 0.971 7 C 0.016 3.984 8 N -0.945 5.945 9 Si 0.932 3.068 10 H -0.265 1.265 11 H -0.285 1.285 12 H -0.245 1.245 13 N -0.475 5.475 14 C -0.006 4.006 15 C 0.127 3.873 16 O -0.538 6.538 17 C -0.075 4.075 18 C -0.132 4.132 19 C -0.143 4.143 20 C -0.029 4.029 21 H 0.061 0.939 22 H 0.070 0.930 23 H 0.045 0.955 24 H 0.038 0.962 25 H 0.049 0.951 26 H 0.266 0.734 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.390 0.610 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.041 0.959 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.635 6.141 4.090 16.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.146 4.146 3 C 0.052 3.948 4 H 0.028 0.972 5 C -0.546 4.546 6 H 0.047 0.953 7 C -0.182 4.182 8 N -0.585 5.585 9 Si 0.756 3.244 10 H -0.190 1.190 11 H -0.211 1.211 12 H -0.168 1.168 13 N -0.198 5.198 14 C -0.136 4.136 15 C 0.085 3.915 16 O -0.344 6.344 17 C -0.094 4.094 18 C -0.189 4.189 19 C -0.200 4.200 20 C -0.158 4.158 21 H 0.080 0.920 22 H 0.089 0.911 23 H 0.064 0.936 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.239 0.761 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.511 6.220 4.417 16.394 hybrid contribution 0.785 -0.312 -1.570 1.783 sum -13.726 5.908 2.847 15.212 Atomic orbital electron populations 1.21983 0.94991 1.01944 1.01837 1.21556 0.95701 0.97197 1.00134 1.20128 0.93769 0.93164 0.87763 0.97237 1.21063 0.91144 1.49105 0.93291 0.95296 1.25847 0.96006 0.94545 1.01766 1.70044 1.12083 1.51685 1.24709 0.85960 0.80119 0.79612 0.78750 1.19023 1.21121 1.16830 1.68791 1.04559 1.12869 1.33577 1.24200 0.98783 0.90720 0.99911 1.22304 0.93186 0.94598 0.81457 1.86300 1.87566 1.42223 1.18355 1.21069 0.96642 0.91900 0.99757 1.21632 0.94888 1.01719 1.00639 1.21766 0.98508 0.97878 1.01873 1.24768 0.94016 0.96253 1.00770 0.92005 0.91135 0.93627 0.94301 0.93181 0.92475 0.92276 0.92744 0.76073 0.90036 0.92535 0.91418 0.92480 0.92568 0.93944 0.90880 0.91178 0.88263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.76 9.18 71.98 0.66 -4.10 16 2 C -0.11 -4.44 5.59 30.59 0.17 -4.27 16 3 C 0.16 7.30 1.02 44.17 0.04 7.34 16 4 H 0.01 0.46 4.67 -2.39 -0.01 0.44 16 5 C -0.51 -28.83 8.23 25.60 0.21 -28.62 16 6 H 0.03 1.88 8.06 -2.91 -0.02 1.85 16 7 C 0.02 0.94 5.47 84.66 0.46 1.40 16 8 N -0.95 -58.94 13.96 21.45 0.30 -58.65 16 9 Si 0.93 43.44 26.99 68.60 1.85 45.29 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.24 -10.55 6.82 99.48 0.68 -9.87 16 13 N -0.48 -18.80 5.94 -907.67 -5.39 -24.20 16 14 C -0.01 -0.25 5.33 83.54 0.45 0.20 16 15 C 0.13 3.79 1.12 -10.46 -0.01 3.77 16 16 O -0.54 -15.45 12.66 -148.98 -1.89 -17.34 16 17 C -0.07 -1.89 2.64 -10.80 -0.03 -1.92 16 18 C -0.13 -2.75 8.94 71.98 0.64 -2.10 16 19 C -0.14 -3.53 9.00 71.98 0.65 -2.88 16 20 C -0.03 -0.90 4.90 83.53 0.41 -0.49 16 21 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 22 H 0.07 2.05 5.11 -2.39 -0.01 2.03 16 23 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 24 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 25 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 27 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.05 2.28 7.85 -2.39 -0.02 2.26 16 29 H 0.39 10.21 8.82 -74.06 -0.65 9.55 16 30 H 0.08 2.01 7.90 -2.38 -0.02 2.00 16 31 H 0.06 1.27 7.61 -2.38 -0.02 1.25 16 32 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.04 1.17 7.48 -2.39 -0.02 1.15 16 36 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.07 2.14 7.32 -2.39 -0.02 2.13 16 38 H 0.10 2.70 6.84 -2.39 -0.02 2.69 16 Total: -1.00 -64.36 295.25 -1.13 -65.49 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 0.34 Total: 21.06 kcal Atomic # 6 Polarization: -35.32 SS G_CDS: 3.66 Total: -31.66 kcal Atomic # 7 Polarization: -77.75 SS G_CDS: -5.09 Total: -82.84 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -1.89 Total: -17.34 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.85 Total: 45.29 kcal Total: -64.36 -1.13 -65.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084376614.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.810 kcal (2) G-P(sol) polarization free energy of solvation -64.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds