Wall clock time and date at job start Mon Mar 30 2020 03:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47406 * 2 1 4 4 H 1.08997 * 109.46866 * 55.75715 * 3 2 1 5 5 C 1.50697 * 109.47234 * 175.76389 * 3 2 1 6 6 H 1.07999 * 120.00459 * 119.99930 * 5 3 2 7 7 C 1.37877 * 119.99749 * 299.99261 * 5 3 2 8 8 N 1.31518 * 120.00179 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00176 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46829 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47347 * 120.00045 * 9 7 5 12 12 H 1.48502 * 109.47250 * 240.00480 * 9 7 5 13 13 N 1.46906 * 109.46660 * 295.75935 * 3 2 1 14 14 C 1.46898 * 110.99512 * 152.89810 * 13 3 2 15 15 C 1.53007 * 109.46907 * 185.73677 * 14 13 3 16 16 C 1.52992 * 109.82203 * 305.88782 * 15 14 13 17 17 C 1.54379 * 109.83306 * 184.99840 * 15 14 13 18 18 C 1.55305 * 102.25387 * 219.13303 * 17 15 14 19 19 C 1.54943 * 100.94263 * 34.13415 * 18 17 15 20 20 O 1.43240 * 109.82611 * 66.86461 * 15 14 13 21 21 H 1.09000 * 109.47067 * 65.15602 * 1 2 3 22 22 H 1.09002 * 109.47242 * 185.15397 * 1 2 3 23 23 H 1.08995 * 109.47358 * 305.15907 * 1 2 3 24 24 H 1.08998 * 109.47674 * 239.99572 * 2 1 3 25 25 H 1.09003 * 109.47053 * 119.99539 * 2 1 3 26 26 H 0.97004 * 120.00275 * 180.02562 * 8 7 5 27 27 H 1.00895 * 110.99804 * 276.84945 * 13 3 2 28 28 H 1.09003 * 109.47431 * 305.73704 * 14 13 3 29 29 H 1.08995 * 109.47454 * 65.74101 * 14 13 3 30 30 H 1.09001 * 109.47593 * 59.30210 * 16 15 14 31 31 H 1.09010 * 109.47082 * 179.29743 * 16 15 14 32 32 H 1.08998 * 109.47267 * 299.29525 * 16 15 14 33 33 H 1.09004 * 110.84673 * 337.31979 * 17 15 14 34 34 H 1.09001 * 110.84610 * 100.73597 * 17 15 14 35 35 H 1.09001 * 111.12352 * 152.04879 * 18 17 15 36 36 H 1.09001 * 111.12329 * 276.17175 * 18 17 15 37 37 H 1.08997 * 110.31261 * 82.47324 * 19 18 17 38 38 H 1.09005 * 110.30773 * 204.54301 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6159 1.9778 0.8495 5 6 3.5433 1.4438 0.1049 6 1 4.1389 1.8917 -0.6767 7 6 4.1584 0.8731 1.1990 8 7 3.4332 0.3272 2.1507 9 14 6.0219 0.8752 1.3296 10 1 6.6008 1.5453 0.1375 11 1 6.4313 1.6053 2.5561 12 1 6.5149 -0.5239 1.3984 13 7 1.6357 2.1048 -1.2474 14 6 1.5108 3.5559 -1.0564 15 6 0.9525 4.1919 -2.3311 16 6 1.8153 3.7938 -3.5303 17 6 0.9353 5.7287 -2.1855 18 6 -0.4047 6.1098 -2.8720 19 6 -1.2846 4.8910 -2.4966 20 8 -0.3980 3.7614 -2.5376 21 1 -0.3633 0.4318 -0.9326 22 1 -0.3634 -1.0235 0.0923 23 1 -0.3634 0.5917 0.8401 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.8660 -0.0740 2.9207 27 1 2.2797 1.8925 -1.9946 28 1 0.8354 3.7561 -0.2246 29 1 2.4911 3.9794 -0.8384 30 1 1.8207 2.7084 -3.6297 31 1 1.4054 4.2396 -4.4367 32 1 2.8343 4.1499 -3.3789 33 1 0.9290 6.0187 -1.1348 34 1 1.7822 6.1771 -2.7049 35 1 -0.8115 7.0312 -2.4552 36 1 -0.2837 6.1900 -3.9523 37 1 -1.6940 5.0143 -1.4940 38 1 -2.0898 4.7682 -3.2210 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087253314.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:52 Heat of formation + Delta-G solvation = -61.418577 kcal Electronic energy + Delta-G solvation = -16725.392824 eV Core-core repulsion = 14181.160308 eV Total energy + Delta-G solvation = -2544.232516 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.50655 -36.00730 -33.13987 -31.93860 -31.38734 -29.86623 -26.65430 -26.03204 -24.03800 -22.41921 -21.45478 -19.49677 -19.28968 -16.69200 -16.19501 -15.51660 -14.76760 -14.74459 -13.78337 -13.64806 -13.24272 -13.00332 -12.51930 -12.46899 -12.17127 -11.91062 -11.53085 -11.39460 -11.15402 -11.09542 -10.94465 -10.86349 -10.60955 -10.47891 -10.38020 -10.06732 -9.52894 -9.42973 -9.08363 -8.89891 -8.34226 -7.09620 -5.95599 -4.09201 3.26841 3.35333 3.38217 4.08874 4.41340 4.65235 4.91779 5.01360 5.26730 5.29425 5.34188 5.54255 5.68600 5.76796 5.83440 5.85212 5.92568 6.09409 6.15487 6.30756 6.38629 6.50039 6.55591 6.63011 6.70149 6.84421 7.22802 7.30546 7.49473 7.55786 7.68522 7.83576 8.17057 8.22030 8.41800 8.76365 9.06104 9.58338 11.03810 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031651 B = 0.007392 C = 0.006478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.434508 B = 3786.890121 C = 4321.447916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.104 4.104 3 C 0.214 3.786 4 H 0.029 0.971 5 C -0.544 4.544 6 H 0.053 0.947 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.888 3.112 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.283 1.283 13 N -0.679 5.679 14 C 0.068 3.932 15 C 0.110 3.890 16 C -0.152 4.152 17 C -0.148 4.148 18 C -0.155 4.155 19 C 0.048 3.952 20 O -0.354 6.354 21 H 0.050 0.950 22 H 0.022 0.978 23 H 0.034 0.966 24 H 0.029 0.971 25 H 0.088 0.912 26 H 0.260 0.740 27 H 0.326 0.674 28 H 0.062 0.938 29 H 0.033 0.967 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.577 9.292 -8.227 13.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.143 4.143 3 C 0.106 3.894 4 H 0.047 0.953 5 C -0.583 4.583 6 H 0.071 0.929 7 C -0.136 4.136 8 N -0.523 5.523 9 Si 0.716 3.284 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.209 1.209 13 N -0.309 5.309 14 C -0.063 4.063 15 C 0.070 3.930 16 C -0.209 4.209 17 C -0.186 4.186 18 C -0.193 4.193 19 C -0.029 4.029 20 O -0.273 6.273 21 H 0.069 0.931 22 H 0.041 0.959 23 H 0.054 0.946 24 H 0.048 0.952 25 H 0.106 0.894 26 H 0.070 0.930 27 H 0.143 0.857 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.292 8.851 -7.972 13.472 hybrid contribution 2.098 0.511 0.344 2.187 sum -4.194 9.362 -7.628 12.784 Atomic orbital electron populations 1.21674 0.98920 0.98032 1.00616 1.21471 0.92175 0.99198 1.01445 1.19156 0.92469 0.91285 0.86469 0.95265 1.21936 0.92842 1.37807 1.05730 0.92895 1.24943 0.97882 0.95057 0.95700 1.69901 1.34721 1.38158 1.09544 0.86617 0.86218 0.77748 0.77858 1.19969 1.21092 1.20944 1.60846 1.54304 1.06075 1.09692 1.22058 0.98303 0.91087 0.94848 1.22190 0.83359 0.91710 0.95710 1.22030 0.98676 1.03293 0.96915 1.23192 0.97927 0.95795 1.01659 1.23229 0.96019 0.98949 1.01113 1.23307 0.93517 0.85703 1.00411 1.88576 1.15666 1.29830 1.93197 0.93105 0.95885 0.94650 0.95195 0.89386 0.92984 0.85681 0.91938 0.94856 0.90840 0.93063 0.92062 0.90522 0.90343 0.90537 0.90816 0.92709 0.90505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 9.73 37.15 0.36 -2.61 16 2 C -0.10 -2.60 5.45 -26.73 -0.15 -2.75 16 3 C 0.21 5.45 1.99 -68.86 -0.14 5.32 16 4 H 0.03 0.83 7.67 -51.93 -0.40 0.43 16 5 C -0.54 -14.86 8.51 -34.44 -0.29 -15.15 16 6 H 0.05 1.43 7.71 -52.49 -0.40 1.03 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -25.36 11.29 55.43 0.63 -24.74 16 9 Si 0.89 21.27 29.54 -169.99 -5.02 16.24 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 N -0.68 -14.85 5.54 -107.95 -0.60 -15.45 16 14 C 0.07 1.31 4.65 -3.82 -0.02 1.29 16 15 C 0.11 1.75 1.04 -89.90 -0.09 1.65 16 16 C -0.15 -2.23 8.26 37.15 0.31 -1.93 16 17 C -0.15 -1.87 6.09 -24.79 -0.15 -2.02 16 18 C -0.16 -1.68 7.16 -24.48 -0.18 -1.86 16 19 C 0.05 0.62 7.78 38.18 0.30 0.91 16 20 O -0.35 -6.05 10.66 -35.23 -0.38 -6.43 16 21 H 0.05 1.10 7.88 -51.93 -0.41 0.69 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.09 2.42 5.97 -51.93 -0.31 2.11 16 26 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.33 7.02 6.55 -39.29 -0.26 6.76 16 28 H 0.06 1.28 7.91 -51.93 -0.41 0.87 16 29 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.18 6.64 -51.93 -0.34 0.84 16 31 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.97 7.85 -51.93 -0.41 0.56 16 34 H 0.08 0.89 7.82 -51.93 -0.41 0.48 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 300.02 15.07 4.52 4.52 Total: -1.00 -28.98 300.02 -7.70 -36.68 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -6.71 Total: 4.56 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: -0.14 Total: -15.39 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.03 Total: -40.19 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -0.38 Total: -6.43 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.98 -7.70 -36.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087253314.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.738 kcal (2) G-P(sol) polarization free energy of solvation -28.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds