Wall clock time and date at job start Mon Mar 30 2020 03:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47406 * 2 1 4 4 H 1.08997 * 109.46866 * 55.75715 * 3 2 1 5 5 C 1.50697 * 109.47234 * 175.76389 * 3 2 1 6 6 H 1.07999 * 120.00459 * 119.99930 * 5 3 2 7 7 C 1.37877 * 119.99749 * 299.99261 * 5 3 2 8 8 N 1.31518 * 120.00179 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00176 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46829 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47347 * 120.00045 * 9 7 5 12 12 H 1.48502 * 109.47250 * 240.00480 * 9 7 5 13 13 N 1.46906 * 109.46660 * 295.75935 * 3 2 1 14 14 C 1.46898 * 110.99512 * 152.89810 * 13 3 2 15 15 C 1.53007 * 109.46907 * 185.73677 * 14 13 3 16 16 C 1.52992 * 109.82203 * 305.88782 * 15 14 13 17 17 C 1.54379 * 109.83306 * 184.99840 * 15 14 13 18 18 C 1.55305 * 102.25387 * 219.13303 * 17 15 14 19 19 C 1.54943 * 100.94263 * 34.13415 * 18 17 15 20 20 O 1.43240 * 109.82611 * 66.86461 * 15 14 13 21 21 H 1.09000 * 109.47067 * 65.15602 * 1 2 3 22 22 H 1.09002 * 109.47242 * 185.15397 * 1 2 3 23 23 H 1.08995 * 109.47358 * 305.15907 * 1 2 3 24 24 H 1.08998 * 109.47674 * 239.99572 * 2 1 3 25 25 H 1.09003 * 109.47053 * 119.99539 * 2 1 3 26 26 H 0.97004 * 120.00275 * 180.02562 * 8 7 5 27 27 H 1.00895 * 110.99804 * 276.84945 * 13 3 2 28 28 H 1.09003 * 109.47431 * 305.73704 * 14 13 3 29 29 H 1.08995 * 109.47454 * 65.74101 * 14 13 3 30 30 H 1.09001 * 109.47593 * 59.30210 * 16 15 14 31 31 H 1.09010 * 109.47082 * 179.29743 * 16 15 14 32 32 H 1.08998 * 109.47267 * 299.29525 * 16 15 14 33 33 H 1.09004 * 110.84673 * 337.31979 * 17 15 14 34 34 H 1.09001 * 110.84610 * 100.73597 * 17 15 14 35 35 H 1.09001 * 111.12352 * 152.04879 * 18 17 15 36 36 H 1.09001 * 111.12329 * 276.17175 * 18 17 15 37 37 H 1.08997 * 110.31261 * 82.47324 * 19 18 17 38 38 H 1.09005 * 110.30773 * 204.54301 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6159 1.9778 0.8495 5 6 3.5433 1.4438 0.1049 6 1 4.1389 1.8917 -0.6767 7 6 4.1584 0.8731 1.1990 8 7 3.4332 0.3272 2.1507 9 14 6.0219 0.8752 1.3296 10 1 6.6008 1.5453 0.1375 11 1 6.4313 1.6053 2.5561 12 1 6.5149 -0.5239 1.3984 13 7 1.6357 2.1048 -1.2474 14 6 1.5108 3.5559 -1.0564 15 6 0.9525 4.1919 -2.3311 16 6 1.8153 3.7938 -3.5303 17 6 0.9353 5.7287 -2.1855 18 6 -0.4047 6.1098 -2.8720 19 6 -1.2846 4.8910 -2.4966 20 8 -0.3980 3.7614 -2.5376 21 1 -0.3633 0.4318 -0.9326 22 1 -0.3634 -1.0235 0.0923 23 1 -0.3634 0.5917 0.8401 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.8660 -0.0740 2.9207 27 1 2.2797 1.8925 -1.9946 28 1 0.8354 3.7561 -0.2246 29 1 2.4911 3.9794 -0.8384 30 1 1.8207 2.7084 -3.6297 31 1 1.4054 4.2396 -4.4367 32 1 2.8343 4.1499 -3.3789 33 1 0.9290 6.0187 -1.1348 34 1 1.7822 6.1771 -2.7049 35 1 -0.8115 7.0312 -2.4552 36 1 -0.2837 6.1900 -3.9523 37 1 -1.6940 5.0143 -1.4940 38 1 -2.0898 4.7682 -3.2210 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087253314.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:52 Heat of formation + Delta-G solvation = -79.863879 kcal Electronic energy + Delta-G solvation = -16726.192672 eV Core-core repulsion = 14181.160308 eV Total energy + Delta-G solvation = -2545.032364 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.69392 -37.85708 -34.82995 -33.52085 -32.84127 -31.38459 -28.48444 -27.32365 -25.65931 -24.21902 -22.50144 -21.38347 -20.67279 -18.75885 -17.27493 -16.91483 -16.58786 -16.20048 -15.54881 -15.13245 -14.71579 -14.41226 -14.13577 -13.89195 -13.56788 -13.28310 -13.12834 -13.06041 -12.81021 -12.70847 -12.50690 -12.40674 -12.08149 -11.94473 -11.80872 -11.52389 -11.49741 -11.16656 -11.00500 -10.48261 -10.29523 -8.96277 -8.04777 -6.28852 1.36933 1.39194 1.49644 2.39532 2.98532 3.13385 3.65551 3.67726 3.96502 4.08302 4.21599 4.32748 4.45680 4.58371 4.72278 4.75369 4.77400 4.86572 4.89380 4.93767 4.95202 4.98683 5.10054 5.15373 5.17570 5.25310 5.41166 5.44804 5.52329 5.63505 5.76873 6.09970 6.19828 6.34762 6.43051 6.85134 7.04389 7.43090 8.91280 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031651 B = 0.007392 C = 0.006478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.434508 B = 3786.890121 C = 4321.447916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.101 4.101 3 C 0.221 3.779 4 H -0.007 1.007 5 C -0.559 4.559 6 H 0.051 0.949 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.954 3.046 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.279 1.279 13 N -0.674 5.674 14 C 0.069 3.931 15 C 0.110 3.890 16 C -0.148 4.148 17 C -0.146 4.146 18 C -0.142 4.142 19 C 0.036 3.964 20 O -0.385 6.385 21 H 0.053 0.947 22 H 0.044 0.956 23 H 0.027 0.973 24 H 0.027 0.973 25 H 0.061 0.939 26 H 0.262 0.738 27 H 0.329 0.671 28 H 0.043 0.957 29 H 0.023 0.977 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.051 0.949 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.398 10.496 -9.614 15.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.139 4.139 3 C 0.112 3.888 4 H 0.011 0.989 5 C -0.599 4.599 6 H 0.070 0.930 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.780 3.220 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.205 1.205 13 N -0.304 5.304 14 C -0.061 4.061 15 C 0.071 3.929 16 C -0.205 4.205 17 C -0.184 4.184 18 C -0.179 4.179 19 C -0.040 4.040 20 O -0.304 6.304 21 H 0.072 0.928 22 H 0.063 0.937 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.146 0.854 28 H 0.062 0.938 29 H 0.041 0.959 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.107 0.893 37 H 0.069 0.931 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.125 10.068 -9.373 15.058 hybrid contribution 1.984 0.142 0.794 2.142 sum -4.141 10.211 -8.579 13.964 Atomic orbital electron populations 1.21515 0.96622 0.99332 1.00390 1.21346 0.94201 0.98483 0.99906 1.18936 0.91613 0.91480 0.86756 0.98896 1.22210 0.93876 1.37869 1.05898 0.93029 1.25719 1.02429 0.94684 0.95367 1.70031 1.36525 1.38650 1.09984 0.85578 0.80691 0.77826 0.77949 1.19283 1.20703 1.20494 1.60786 1.53850 1.07655 1.08080 1.22105 0.97606 0.89689 0.96748 1.22147 0.83226 0.93586 0.93959 1.21993 0.99051 1.02193 0.97290 1.23192 0.99974 0.93187 1.02069 1.23206 0.93994 0.98781 1.01918 1.23560 0.93779 0.85691 1.00971 1.88533 1.16453 1.32330 1.93130 0.92774 0.93670 0.95413 0.95385 0.92071 0.92866 0.85351 0.93848 0.95850 0.92733 0.90896 0.91307 0.91004 0.88525 0.88162 0.89349 0.93094 0.88696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.33 9.73 71.98 0.70 -4.63 16 2 C -0.10 -5.12 5.45 30.59 0.17 -4.95 16 3 C 0.22 11.58 1.99 44.17 0.09 11.67 16 4 H -0.01 -0.41 7.67 -2.39 -0.02 -0.43 16 5 C -0.56 -31.06 8.51 25.60 0.22 -30.84 16 6 H 0.05 2.81 7.71 -2.91 -0.02 2.79 16 7 C 0.02 0.99 5.29 84.65 0.45 1.44 16 8 N -0.91 -53.31 11.29 21.45 0.24 -53.07 16 9 Si 0.95 43.79 29.54 68.60 2.03 45.82 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 13 N -0.67 -30.01 5.54 -495.43 -2.74 -32.76 16 14 C 0.07 2.72 4.65 86.31 0.40 3.12 16 15 C 0.11 3.40 1.04 -10.33 -0.01 3.39 16 16 C -0.15 -4.12 8.26 71.98 0.59 -3.53 16 17 C -0.15 -3.39 6.09 31.85 0.19 -3.19 16 18 C -0.14 -2.61 7.16 32.05 0.23 -2.38 16 19 C 0.04 0.87 7.78 72.65 0.56 1.43 16 20 O -0.38 -12.80 10.66 -148.98 -1.59 -14.38 16 21 H 0.05 2.32 7.88 -2.39 -0.02 2.30 16 22 H 0.04 1.75 8.14 -2.39 -0.02 1.74 16 23 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.06 3.45 5.97 -2.39 -0.01 3.44 16 26 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 27 H 0.33 14.33 6.55 -89.70 -0.59 13.74 16 28 H 0.04 1.84 7.91 -2.39 -0.02 1.82 16 29 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.05 1.71 6.64 -2.39 -0.02 1.70 16 31 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.07 1.72 7.85 -2.38 -0.02 1.71 16 34 H 0.10 1.90 7.82 -2.39 -0.02 1.88 16 35 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 Total: -1.00 -62.66 300.02 1.96 -60.70 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 0.42 Total: 22.15 kcal Atomic # 6 Polarization: -32.06 SS G_CDS: 3.59 Total: -28.46 kcal Atomic # 7 Polarization: -83.32 SS G_CDS: -2.50 Total: -85.83 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -1.59 Total: -14.38 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -62.66 1.96 -60.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087253314.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.160 kcal (2) G-P(sol) polarization free energy of solvation -62.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds