Wall clock time and date at job start Mon Mar 30 2020 03:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47363 * 2 1 4 4 H 1.08997 * 109.47012 * 54.25943 * 3 2 1 5 5 C 1.50697 * 109.47234 * 174.26266 * 3 2 1 6 6 H 1.08005 * 120.00272 * 119.99574 * 5 3 2 7 7 C 1.37877 * 119.99871 * 299.99827 * 5 3 2 8 8 N 1.31510 * 120.00144 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99857 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47143 * 89.99928 * 9 7 5 11 11 H 1.48498 * 109.47014 * 210.00278 * 9 7 5 12 12 H 1.48502 * 109.47099 * 330.00119 * 9 7 5 13 13 N 1.46903 * 109.46964 * 294.26006 * 3 2 1 14 14 C 1.46901 * 110.99890 * 156.64951 * 13 3 2 15 15 C 1.53001 * 109.46854 * 173.73976 * 14 13 3 16 16 C 1.53002 * 109.86937 * 59.30728 * 15 14 13 17 17 C 1.54106 * 110.00203 * 180.38983 * 15 14 13 18 18 C 1.54804 * 104.18833 * 121.52956 * 17 15 14 19 19 C 1.54997 * 102.09099 * 20.87790 * 18 17 15 20 20 O 1.43739 * 109.88254 * 298.29801 * 15 14 13 21 21 H 1.09010 * 109.46829 * 57.23846 * 1 2 3 22 22 H 1.09002 * 109.47538 * 177.23428 * 1 2 3 23 23 H 1.08997 * 109.47547 * 297.23598 * 1 2 3 24 24 H 1.08999 * 109.47145 * 239.99221 * 2 1 3 25 25 H 1.09000 * 109.46674 * 119.99874 * 2 1 3 26 26 H 0.97003 * 120.00122 * 179.97438 * 8 7 5 27 27 H 1.00905 * 110.99833 * 32.69823 * 13 3 2 28 28 H 1.09002 * 109.46566 * 53.74837 * 14 13 3 29 29 H 1.08995 * 109.47554 * 293.74691 * 14 13 3 30 30 H 1.09001 * 109.46622 * 300.44309 * 16 15 14 31 31 H 1.09003 * 109.47162 * 60.43764 * 16 15 14 32 32 H 1.08995 * 109.47475 * 180.43951 * 16 15 14 33 33 H 1.09003 * 110.48845 * 240.20855 * 17 15 14 34 34 H 1.09000 * 110.48359 * 2.85096 * 17 15 14 35 35 H 1.08999 * 110.90804 * 262.68222 * 18 17 15 36 36 H 1.08995 * 110.93679 * 139.09254 * 18 17 15 37 37 H 1.09003 * 110.61663 * 204.47137 * 19 18 17 38 38 H 1.09001 * 110.75020 * 81.54498 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5952 1.9851 0.8341 5 6 3.5403 1.4448 0.1420 6 1 4.1550 1.8860 -0.6286 7 6 4.1282 0.8837 1.2558 8 7 3.3796 0.3468 2.1945 9 14 5.9879 0.8859 1.4315 10 1 6.4173 2.1219 2.1340 11 1 6.4125 -0.3018 2.2153 12 1 6.6124 0.8395 0.0850 13 7 1.6667 2.0938 -1.2627 14 6 1.6241 3.5541 -1.1092 15 6 1.3867 4.2036 -2.4741 16 6 0.0664 3.7049 -3.0648 17 6 1.3495 5.7373 -2.3287 18 6 2.4808 6.2345 -3.2611 19 6 2.6642 5.0303 -4.2197 20 8 2.4709 3.8848 -3.3623 21 1 -0.3633 0.5562 -0.8643 22 1 -0.3634 -1.0265 -0.0496 23 1 -0.3634 0.4703 0.9137 24 1 1.8933 -0.5139 -0.8899 25 1 1.8932 -0.5138 0.8900 26 1 3.7933 -0.0483 2.9779 27 1 0.7859 1.7403 -1.6053 28 1 2.5718 3.9042 -0.7002 29 1 0.8140 3.8249 -0.4322 30 1 0.1047 2.6213 -3.1765 31 1 -0.7538 3.9726 -2.3986 32 1 -0.0924 4.1653 -4.0398 33 1 0.3860 6.1283 -2.6558 34 1 1.5498 6.0277 -1.2974 35 1 3.3939 6.4253 -2.6973 36 1 2.1711 7.1243 -3.8091 37 1 3.6681 5.0271 -4.6442 38 1 1.9144 5.0486 -5.0106 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087253317.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:56 Heat of formation + Delta-G solvation = -56.906639 kcal Electronic energy + Delta-G solvation = -16748.788961 eV Core-core repulsion = 14204.752097 eV Total energy + Delta-G solvation = -2544.036864 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.49169 -36.14862 -33.08007 -31.86671 -31.42041 -29.82727 -26.67038 -26.31015 -24.00803 -22.42399 -21.41998 -19.58686 -19.33469 -16.24491 -15.99112 -15.63729 -14.78835 -14.63154 -14.09208 -13.78941 -13.56159 -12.92040 -12.55181 -12.35038 -12.30691 -11.94627 -11.63815 -11.48387 -11.18979 -11.06086 -10.86713 -10.76230 -10.57787 -10.51411 -10.37979 -9.86223 -9.60407 -9.53352 -9.12984 -8.95173 -8.26526 -7.05035 -5.88248 -3.91174 3.37886 3.44044 3.50654 4.18404 4.52827 4.76908 4.94074 5.04643 5.22073 5.36038 5.41378 5.50244 5.65700 5.70156 5.79657 5.89466 5.93343 6.07396 6.16264 6.21053 6.21697 6.23682 6.33833 6.46157 6.49249 6.74597 6.90576 7.15464 7.26640 7.41904 7.60248 7.87181 8.02974 8.42287 8.49438 8.89178 9.18606 9.73397 11.17233 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025044 B = 0.008400 C = 0.006792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.777495 B = 3332.635087 C = 4121.266495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.218 3.782 4 H -0.002 1.002 5 C -0.487 4.487 6 H 0.063 0.937 7 C 0.052 3.948 8 N -0.899 5.899 9 Si 0.894 3.106 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.677 5.677 14 C 0.079 3.921 15 C 0.105 3.895 16 C -0.163 4.163 17 C -0.147 4.147 18 C -0.154 4.154 19 C 0.040 3.960 20 O -0.339 6.339 21 H 0.034 0.966 22 H 0.036 0.964 23 H 0.041 0.959 24 H 0.041 0.959 25 H 0.099 0.901 26 H 0.258 0.742 27 H 0.314 0.686 28 H 0.079 0.921 29 H 0.023 0.977 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.768 8.977 -8.760 13.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C 0.111 3.889 4 H 0.015 0.985 5 C -0.526 4.526 6 H 0.081 0.919 7 C -0.147 4.147 8 N -0.540 5.540 9 Si 0.722 3.278 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.309 5.309 14 C -0.052 4.052 15 C 0.065 3.935 16 C -0.221 4.221 17 C -0.186 4.186 18 C -0.192 4.192 19 C -0.037 4.037 20 O -0.257 6.257 21 H 0.053 0.947 22 H 0.055 0.945 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.117 0.883 26 H 0.068 0.932 27 H 0.133 0.867 28 H 0.098 0.902 29 H 0.041 0.959 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.983 8.662 -8.823 13.331 hybrid contribution 0.010 0.326 0.696 0.769 sum -4.973 8.988 -8.127 13.098 Atomic orbital electron populations 1.21883 0.99736 0.99444 0.99631 1.21744 0.91121 1.00412 1.03036 1.19135 0.95512 0.90020 0.84255 0.98451 1.21259 0.91381 1.35958 1.03974 0.91891 1.24963 0.97993 0.95814 0.95948 1.69877 1.34556 1.39960 1.09596 0.86562 0.86020 0.77200 0.78008 1.21003 1.21457 1.19870 1.60611 1.34843 1.02141 1.33257 1.21917 1.00752 0.90732 0.91768 1.22198 0.87287 0.92500 0.91493 1.22241 0.96620 1.02858 1.00336 1.23018 0.98950 0.95535 1.01051 1.23103 0.99458 0.98547 0.98047 1.23494 1.01101 0.85713 0.93410 1.89148 1.52312 1.36257 1.48017 0.94673 0.94454 0.93941 0.94030 0.88290 0.93232 0.86727 0.90213 0.95937 0.91145 0.92306 0.93033 0.91053 0.90422 0.90552 0.90957 0.89580 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.79 37.16 0.36 -2.61 16 2 C -0.12 -3.03 5.37 -26.73 -0.14 -3.18 16 3 C 0.22 5.60 2.02 -68.87 -0.14 5.46 16 4 H 0.00 -0.06 7.88 -51.93 -0.41 -0.47 16 5 C -0.49 -13.91 8.44 -34.44 -0.29 -14.20 16 6 H 0.06 1.87 7.81 -52.48 -0.41 1.46 16 7 C 0.05 1.49 5.29 -17.82 -0.09 1.40 16 8 N -0.90 -26.14 11.29 55.43 0.63 -25.52 16 9 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 13 N -0.68 -15.06 6.07 -107.95 -0.66 -15.71 16 14 C 0.08 1.55 4.49 -3.82 -0.02 1.53 16 15 C 0.11 1.71 0.94 -90.04 -0.08 1.62 16 16 C -0.16 -2.31 8.26 37.16 0.31 -2.00 16 17 C -0.15 -1.92 6.28 -25.20 -0.16 -2.08 16 18 C -0.15 -1.83 7.15 -24.73 -0.18 -2.00 16 19 C 0.04 0.54 7.67 38.21 0.29 0.83 16 20 O -0.34 -6.18 10.76 -35.23 -0.38 -6.56 16 21 H 0.03 0.63 6.37 -51.92 -0.33 0.30 16 22 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 25 H 0.10 2.69 5.94 -51.93 -0.31 2.38 16 26 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 27 H 0.31 6.39 4.82 -39.29 -0.19 6.20 16 28 H 0.08 1.76 7.83 -51.93 -0.41 1.36 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 1.08 6.73 -51.93 -0.35 0.73 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.64 8.13 -51.93 -0.42 0.22 16 33 H 0.07 0.79 7.70 -51.93 -0.40 0.39 16 34 H 0.08 1.01 7.70 -51.93 -0.40 0.61 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.05 0.61 8.13 -51.93 -0.42 0.18 16 LS Contribution 297.19 15.07 4.48 4.48 Total: -1.00 -30.18 297.19 -7.66 -37.83 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -6.57 Total: 3.57 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -0.14 Total: -15.21 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: -0.03 Total: -41.23 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -0.38 Total: -6.56 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.18 -7.66 -37.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087253317.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.073 kcal (2) G-P(sol) polarization free energy of solvation -30.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds