Wall clock time and date at job start Mon Mar 30 2020 03:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47363 * 2 1 4 4 H 1.08997 * 109.47012 * 54.25943 * 3 2 1 5 5 C 1.50697 * 109.47234 * 174.26266 * 3 2 1 6 6 H 1.08005 * 120.00272 * 119.99574 * 5 3 2 7 7 C 1.37877 * 119.99871 * 299.99827 * 5 3 2 8 8 N 1.31510 * 120.00144 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99857 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47143 * 89.99928 * 9 7 5 11 11 H 1.48498 * 109.47014 * 210.00278 * 9 7 5 12 12 H 1.48502 * 109.47099 * 330.00119 * 9 7 5 13 13 N 1.46903 * 109.46964 * 294.26006 * 3 2 1 14 14 C 1.46901 * 110.99890 * 156.64951 * 13 3 2 15 15 C 1.53001 * 109.46854 * 173.73976 * 14 13 3 16 16 C 1.53002 * 109.86937 * 59.30728 * 15 14 13 17 17 C 1.54106 * 110.00203 * 180.38983 * 15 14 13 18 18 C 1.54804 * 104.18833 * 121.52956 * 17 15 14 19 19 C 1.54997 * 102.09099 * 20.87790 * 18 17 15 20 20 O 1.43739 * 109.88254 * 298.29801 * 15 14 13 21 21 H 1.09010 * 109.46829 * 57.23846 * 1 2 3 22 22 H 1.09002 * 109.47538 * 177.23428 * 1 2 3 23 23 H 1.08997 * 109.47547 * 297.23598 * 1 2 3 24 24 H 1.08999 * 109.47145 * 239.99221 * 2 1 3 25 25 H 1.09000 * 109.46674 * 119.99874 * 2 1 3 26 26 H 0.97003 * 120.00122 * 179.97438 * 8 7 5 27 27 H 1.00905 * 110.99833 * 32.69823 * 13 3 2 28 28 H 1.09002 * 109.46566 * 53.74837 * 14 13 3 29 29 H 1.08995 * 109.47554 * 293.74691 * 14 13 3 30 30 H 1.09001 * 109.46622 * 300.44309 * 16 15 14 31 31 H 1.09003 * 109.47162 * 60.43764 * 16 15 14 32 32 H 1.08995 * 109.47475 * 180.43951 * 16 15 14 33 33 H 1.09003 * 110.48845 * 240.20855 * 17 15 14 34 34 H 1.09000 * 110.48359 * 2.85096 * 17 15 14 35 35 H 1.08999 * 110.90804 * 262.68222 * 18 17 15 36 36 H 1.08995 * 110.93679 * 139.09254 * 18 17 15 37 37 H 1.09003 * 110.61663 * 204.47137 * 19 18 17 38 38 H 1.09001 * 110.75020 * 81.54498 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5952 1.9851 0.8341 5 6 3.5403 1.4448 0.1420 6 1 4.1550 1.8860 -0.6286 7 6 4.1282 0.8837 1.2558 8 7 3.3796 0.3468 2.1945 9 14 5.9879 0.8859 1.4315 10 1 6.4173 2.1219 2.1340 11 1 6.4125 -0.3018 2.2153 12 1 6.6124 0.8395 0.0850 13 7 1.6667 2.0938 -1.2627 14 6 1.6241 3.5541 -1.1092 15 6 1.3867 4.2036 -2.4741 16 6 0.0664 3.7049 -3.0648 17 6 1.3495 5.7373 -2.3287 18 6 2.4808 6.2345 -3.2611 19 6 2.6642 5.0303 -4.2197 20 8 2.4709 3.8848 -3.3623 21 1 -0.3633 0.5562 -0.8643 22 1 -0.3634 -1.0265 -0.0496 23 1 -0.3634 0.4703 0.9137 24 1 1.8933 -0.5139 -0.8899 25 1 1.8932 -0.5138 0.8900 26 1 3.7933 -0.0483 2.9779 27 1 0.7859 1.7403 -1.6053 28 1 2.5718 3.9042 -0.7002 29 1 0.8140 3.8249 -0.4322 30 1 0.1047 2.6213 -3.1765 31 1 -0.7538 3.9726 -2.3986 32 1 -0.0924 4.1653 -4.0398 33 1 0.3860 6.1283 -2.6558 34 1 1.5498 6.0277 -1.2974 35 1 3.3939 6.4253 -2.6973 36 1 2.1711 7.1243 -3.8091 37 1 3.6681 5.0271 -4.6442 38 1 1.9144 5.0486 -5.0106 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087253317.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:55 Heat of formation + Delta-G solvation = -77.025206 kcal Electronic energy + Delta-G solvation = -16749.661367 eV Core-core repulsion = 14204.752097 eV Total energy + Delta-G solvation = -2544.909270 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.70395 -37.98860 -34.80999 -33.54388 -32.80085 -31.29399 -28.51765 -27.60791 -25.64833 -24.20683 -22.47765 -21.41099 -20.74616 -18.36518 -17.31954 -16.97217 -16.58368 -16.07009 -15.62754 -15.53384 -14.72909 -14.62109 -14.06422 -13.90939 -13.71593 -13.30275 -13.11806 -13.09760 -12.75117 -12.57407 -12.53534 -12.35681 -12.00592 -11.98157 -11.90097 -11.53436 -11.45645 -11.20887 -10.98714 -10.43509 -10.40202 -8.90528 -8.06467 -6.17930 1.38717 1.39938 1.51752 2.43784 3.04788 3.17734 3.62806 3.72268 3.97886 4.02144 4.21276 4.31250 4.47399 4.50447 4.56794 4.63562 4.69414 4.74772 4.80448 4.90249 4.95798 4.98962 5.05881 5.10278 5.15208 5.22986 5.26661 5.36970 5.45280 5.59702 5.75397 5.90783 6.25554 6.38494 6.55733 6.96285 7.06440 7.50826 8.96535 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025044 B = 0.008400 C = 0.006792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.777495 B = 3332.635087 C = 4121.266495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.120 4.120 3 C 0.224 3.776 4 H -0.033 1.033 5 C -0.509 4.509 6 H 0.043 0.957 7 C 0.009 3.991 8 N -0.919 5.919 9 Si 0.954 3.046 10 H -0.277 1.277 11 H -0.279 1.279 12 H -0.275 1.275 13 N -0.680 5.680 14 C 0.079 3.921 15 C 0.103 3.897 16 C -0.158 4.158 17 C -0.144 4.144 18 C -0.148 4.148 19 C 0.033 3.967 20 O -0.383 6.383 21 H 0.055 0.945 22 H 0.060 0.940 23 H 0.038 0.962 24 H 0.033 0.967 25 H 0.068 0.932 26 H 0.260 0.740 27 H 0.327 0.673 28 H 0.044 0.956 29 H 0.031 0.969 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.596 10.027 -9.969 15.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.159 4.159 3 C 0.116 3.884 4 H -0.016 1.016 5 C -0.547 4.547 6 H 0.061 0.939 7 C -0.189 4.189 8 N -0.560 5.560 9 Si 0.780 3.220 10 H -0.202 1.202 11 H -0.205 1.205 12 H -0.200 1.200 13 N -0.313 5.313 14 C -0.051 4.051 15 C 0.064 3.936 16 C -0.215 4.215 17 C -0.183 4.183 18 C -0.185 4.185 19 C -0.044 4.044 20 O -0.303 6.303 21 H 0.074 0.926 22 H 0.079 0.921 23 H 0.057 0.943 24 H 0.052 0.948 25 H 0.087 0.913 26 H 0.070 0.930 27 H 0.146 0.854 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.118 0.882 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.124 0.876 37 H 0.109 0.891 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.825 9.723 -10.043 15.144 hybrid contribution 0.282 0.019 1.053 1.090 sum -5.543 9.742 -8.990 14.368 Atomic orbital electron populations 1.21744 0.96095 1.01326 1.00383 1.21569 0.94404 0.98868 1.01044 1.18919 0.93958 0.90828 0.84701 1.01578 1.21445 0.92992 1.36411 1.03893 0.93916 1.25669 1.02277 0.95370 0.95587 1.69993 1.36121 1.40072 1.09825 0.85616 0.80878 0.77626 0.77853 1.20242 1.20460 1.20004 1.60497 1.35786 1.03712 1.31311 1.21936 0.99156 0.89317 0.94726 1.22227 0.87876 0.94331 0.89190 1.22195 0.95719 1.01844 1.01768 1.23024 1.00921 0.93082 1.01229 1.23095 0.98691 0.99160 0.97571 1.23746 1.02197 0.84831 0.93581 1.89088 1.53237 1.38815 1.49124 0.92630 0.92142 0.94278 0.94823 0.91325 0.93037 0.85354 0.93749 0.95150 0.92829 0.90652 0.90821 0.88182 0.91080 0.91626 0.87608 0.89114 0.90951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.34 9.79 71.98 0.70 -4.64 16 2 C -0.12 -5.94 5.37 30.59 0.16 -5.78 16 3 C 0.22 11.88 2.02 44.17 0.09 11.97 16 4 H -0.03 -1.93 7.88 -2.39 -0.02 -1.95 16 5 C -0.51 -30.07 8.44 25.60 0.22 -29.85 16 6 H 0.04 2.63 7.81 -2.91 -0.02 2.61 16 7 C 0.01 0.51 5.29 84.66 0.45 0.96 16 8 N -0.92 -54.52 11.29 21.45 0.24 -54.27 16 9 Si 0.95 46.16 29.54 68.60 2.03 48.19 16 10 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 13 N -0.68 -30.81 6.07 -495.45 -3.01 -33.82 16 14 C 0.08 3.16 4.49 86.30 0.39 3.54 16 15 C 0.10 3.24 0.94 -10.42 -0.01 3.23 16 16 C -0.16 -4.08 8.26 71.98 0.59 -3.49 16 17 C -0.14 -3.44 6.28 31.58 0.20 -3.24 16 18 C -0.15 -3.15 7.15 31.89 0.23 -2.92 16 19 C 0.03 0.82 7.67 72.67 0.56 1.37 16 20 O -0.38 -13.79 10.76 -148.98 -1.60 -15.40 16 21 H 0.05 1.90 6.37 -2.38 -0.02 1.89 16 22 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 23 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.07 3.82 5.94 -2.39 -0.01 3.80 16 26 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 27 H 0.33 13.18 4.82 -89.69 -0.43 12.74 16 28 H 0.04 2.06 7.83 -2.39 -0.02 2.04 16 29 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.05 1.56 6.73 -2.39 -0.02 1.54 16 31 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 1.58 8.13 -2.39 -0.02 1.56 16 33 H 0.10 1.82 7.70 -2.39 -0.02 1.80 16 34 H 0.07 1.77 7.70 -2.39 -0.02 1.75 16 35 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.09 2.10 8.14 -2.39 -0.02 2.09 16 38 H 0.07 1.48 8.13 -2.39 -0.02 1.46 16 Total: -1.00 -66.88 297.19 1.81 -65.06 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.58 Total: 19.07 kcal Atomic # 6 Polarization: -32.41 SS G_CDS: 3.58 Total: -28.84 kcal Atomic # 7 Polarization: -85.32 SS G_CDS: -2.77 Total: -88.09 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -1.60 Total: -15.40 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -66.88 1.81 -65.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087253317.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.963 kcal (2) G-P(sol) polarization free energy of solvation -66.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds