Wall clock time and date at job start Mon Mar 30 2020 03:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47278 * 2 1 4 4 H 1.09001 * 109.47158 * 305.65786 * 3 2 1 5 5 C 1.50702 * 109.47335 * 185.66115 * 3 2 1 6 6 H 1.07997 * 119.99793 * 240.00254 * 5 3 2 7 7 C 1.37876 * 119.99892 * 59.99379 * 5 3 2 8 8 N 1.31508 * 120.00298 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99712 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47062 * 60.00284 * 9 7 5 11 11 H 1.48496 * 109.46984 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46977 * 300.00285 * 9 7 5 13 13 N 1.46897 * 109.47124 * 65.65743 * 3 2 1 14 14 C 1.46898 * 111.00073 * 205.49071 * 13 3 2 15 15 C 1.52997 * 109.47385 * 185.19679 * 14 13 3 16 16 C 1.53006 * 109.87019 * 59.55545 * 15 14 13 17 17 C 1.54100 * 109.88061 * 180.71507 * 15 14 13 18 18 C 1.54814 * 104.18678 * 121.45804 * 17 15 14 19 19 C 1.54991 * 102.09030 * 20.88227 * 18 17 15 20 20 O 1.43740 * 109.88169 * 298.55170 * 15 14 13 21 21 H 1.08998 * 109.47258 * 175.53631 * 1 2 3 22 22 H 1.08996 * 109.46912 * 295.54054 * 1 2 3 23 23 H 1.08998 * 109.47084 * 55.53739 * 1 2 3 24 24 H 1.09001 * 109.46612 * 240.00020 * 2 1 3 25 25 H 1.08991 * 109.47024 * 120.00213 * 2 1 3 26 26 H 0.97000 * 120.00268 * 179.97438 * 8 7 5 27 27 H 1.00895 * 111.00222 * 329.44288 * 13 3 2 28 28 H 1.09001 * 109.47334 * 65.20255 * 14 13 3 29 29 H 1.09003 * 109.47525 * 305.19884 * 14 13 3 30 30 H 1.09004 * 109.46731 * 60.69660 * 16 15 14 31 31 H 1.08993 * 109.47749 * 180.70108 * 16 15 14 32 32 H 1.09004 * 109.46529 * 300.70555 * 16 15 14 33 33 H 1.09004 * 110.48798 * 240.13286 * 17 15 14 34 34 H 1.08995 * 110.49108 * 2.77826 * 17 15 14 35 35 H 1.09000 * 110.90499 * 262.68086 * 18 17 15 36 36 H 1.09001 * 110.93856 * 139.09324 * 18 17 15 37 37 H 1.09009 * 110.61317 * 204.47575 * 19 18 17 38 38 H 1.08996 * 110.75427 * 81.54539 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5964 1.9847 -0.8350 5 6 3.5405 1.4447 -0.1402 6 1 4.1542 1.8863 0.6311 7 6 4.1298 0.8830 -1.2529 8 7 3.3826 0.3456 -2.1922 9 14 5.9898 0.8853 -1.4262 10 1 6.5938 0.1461 -0.2887 11 1 6.3688 0.2268 -2.7021 12 1 6.4852 2.2852 -1.4259 13 7 1.6651 2.0944 1.2618 14 6 1.5731 3.5509 1.0948 15 6 1.3092 4.2044 2.4528 16 6 2.4453 3.8687 3.4211 17 6 1.1932 5.7319 2.2856 18 6 -0.2187 6.0665 2.8255 19 6 -0.5256 4.8361 3.7166 20 8 0.0588 3.7366 2.9856 21 1 -0.3634 -1.0245 -0.0800 22 1 -0.3633 0.4431 0.9272 23 1 -0.3633 0.5815 -0.8473 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.7971 -0.0493 -2.9752 27 1 0.8014 1.7165 1.6214 28 1 0.7563 3.7877 0.4130 29 1 2.5096 3.9296 0.6853 30 1 3.3855 4.2528 3.0251 31 1 2.2448 4.3268 4.3895 32 1 2.5152 2.7872 3.5381 33 1 1.9571 6.2393 2.8749 34 1 1.2750 6.0080 1.2344 35 1 -0.9381 6.1457 2.0104 36 1 -0.2025 6.9814 3.4178 37 1 -1.6016 4.6978 3.8225 38 1 -0.0551 4.9402 4.6942 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087253319.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:58 Heat of formation + Delta-G solvation = -60.804943 kcal Electronic energy + Delta-G solvation = -16724.642759 eV Core-core repulsion = 14180.436853 eV Total energy + Delta-G solvation = -2544.205907 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.55342 -36.09742 -33.01965 -31.98229 -31.45452 -29.79881 -26.73774 -26.11696 -24.00822 -22.40314 -21.47393 -19.71135 -19.27246 -16.23771 -16.03749 -15.66180 -14.84016 -14.65757 -14.00301 -13.66796 -13.66231 -13.05577 -12.58066 -12.44448 -11.94548 -11.79474 -11.55064 -11.44888 -11.28800 -11.13349 -10.84734 -10.75542 -10.60100 -10.54750 -10.39880 -9.88838 -9.62541 -9.53558 -9.20776 -8.98537 -8.28276 -7.07199 -5.90642 -3.94751 3.36820 3.41001 3.44348 4.10429 4.49254 4.72846 4.89933 5.03418 5.18864 5.36722 5.38422 5.56702 5.70967 5.74536 5.80179 5.88947 6.03386 6.07811 6.23545 6.25403 6.27978 6.36637 6.43715 6.52719 6.61376 6.85002 6.95627 7.17355 7.29262 7.31385 7.59873 7.86847 7.99455 8.41808 8.49254 8.90028 9.13396 9.69977 11.14609 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030752 B = 0.007503 C = 0.006513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.305886 B = 3731.013060 C = 4298.062610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.218 3.782 4 H -0.001 1.001 5 C -0.491 4.491 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.681 5.681 14 C 0.080 3.920 15 C 0.104 3.896 16 C -0.148 4.148 17 C -0.148 4.148 18 C -0.155 4.155 19 C 0.046 3.954 20 O -0.365 6.365 21 H 0.036 0.964 22 H 0.037 0.963 23 H 0.041 0.959 24 H 0.098 0.902 25 H 0.040 0.960 26 H 0.259 0.741 27 H 0.324 0.676 28 H 0.017 0.983 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.039 0.961 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.031 8.877 8.683 13.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C 0.110 3.890 4 H 0.017 0.983 5 C -0.530 4.530 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.205 1.205 13 N -0.312 5.312 14 C -0.050 4.050 15 C 0.065 3.935 16 C -0.205 4.205 17 C -0.186 4.186 18 C -0.192 4.192 19 C -0.031 4.031 20 O -0.284 6.284 21 H 0.055 0.945 22 H 0.056 0.944 23 H 0.060 0.940 24 H 0.116 0.884 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.142 0.858 28 H 0.035 0.965 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.436 8.577 8.697 13.370 hybrid contribution 0.238 0.319 -0.670 0.779 sum -5.198 8.896 8.028 13.062 Atomic orbital electron populations 1.21875 0.99602 0.99524 0.99731 1.21745 0.91259 1.00376 1.02909 1.19141 0.95277 0.90034 0.84504 0.98313 1.21200 0.91385 1.36372 1.04079 0.92151 1.24962 0.97957 0.95755 0.95923 1.69867 1.34678 1.39624 1.09561 0.86629 0.85974 0.78057 0.77095 1.20335 1.21508 1.20517 1.60621 1.36834 1.01586 1.32201 1.21929 1.00006 0.91143 0.91935 1.22303 0.84690 0.91621 0.94895 1.22050 0.97290 1.04083 0.97122 1.23026 0.96964 0.96151 1.02437 1.23105 0.97430 0.98721 0.99970 1.23455 0.98640 0.86179 0.94865 1.88926 1.34757 1.34956 1.69783 0.94520 0.94370 0.94024 0.88389 0.94108 0.93106 0.85823 0.96496 0.89987 0.92069 0.94154 0.90142 0.90756 0.90462 0.90816 0.90797 0.89686 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 9.67 37.16 0.36 -2.72 16 2 C -0.12 -3.04 5.36 -26.73 -0.14 -3.18 16 3 C 0.22 5.57 2.02 -68.87 -0.14 5.43 16 4 H 0.00 -0.02 7.85 -51.93 -0.41 -0.43 16 5 C -0.49 -13.72 8.56 -34.44 -0.29 -14.02 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.05 1.52 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -25.91 11.29 55.43 0.63 -25.28 16 9 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.68 -15.07 5.50 -107.96 -0.59 -15.66 16 14 C 0.08 1.58 4.43 -3.83 -0.02 1.56 16 15 C 0.10 1.69 0.94 -90.04 -0.08 1.60 16 16 C -0.15 -2.35 8.47 37.16 0.31 -2.03 16 17 C -0.15 -1.92 6.28 -25.20 -0.16 -2.08 16 18 C -0.15 -1.72 7.15 -24.72 -0.18 -1.89 16 19 C 0.05 0.56 7.67 38.21 0.29 0.85 16 20 O -0.36 -6.03 10.37 -35.23 -0.37 -6.40 16 21 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 22 H 0.04 0.73 6.61 -51.93 -0.34 0.38 16 23 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.10 2.66 5.94 -51.93 -0.31 2.35 16 25 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.32 6.96 6.17 -39.29 -0.24 6.71 16 28 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 1.71 7.93 -51.93 -0.41 1.30 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 1.45 7.60 -51.93 -0.39 1.06 16 33 H 0.07 0.87 7.70 -51.93 -0.40 0.47 16 34 H 0.08 1.01 7.70 -51.93 -0.40 0.61 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 298.88 15.07 4.50 4.50 Total: -1.00 -28.99 298.88 -7.67 -36.66 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -6.68 Total: 4.54 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -0.14 Total: -15.06 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 0.03 Total: -40.94 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: -0.37 Total: -6.40 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.99 -7.67 -36.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087253319.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.143 kcal (2) G-P(sol) polarization free energy of solvation -28.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds