Wall clock time and date at job start Mon Mar 30 2020 03:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47278 * 2 1 4 4 H 1.09001 * 109.47158 * 305.65786 * 3 2 1 5 5 C 1.50702 * 109.47335 * 185.66115 * 3 2 1 6 6 H 1.07997 * 119.99793 * 240.00254 * 5 3 2 7 7 C 1.37876 * 119.99892 * 59.99379 * 5 3 2 8 8 N 1.31508 * 120.00298 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99712 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47062 * 60.00284 * 9 7 5 11 11 H 1.48496 * 109.46984 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46977 * 300.00285 * 9 7 5 13 13 N 1.46897 * 109.47124 * 65.65743 * 3 2 1 14 14 C 1.46898 * 111.00073 * 205.49071 * 13 3 2 15 15 C 1.52997 * 109.47385 * 185.19679 * 14 13 3 16 16 C 1.53006 * 109.87019 * 59.55545 * 15 14 13 17 17 C 1.54100 * 109.88061 * 180.71507 * 15 14 13 18 18 C 1.54814 * 104.18678 * 121.45804 * 17 15 14 19 19 C 1.54991 * 102.09030 * 20.88227 * 18 17 15 20 20 O 1.43740 * 109.88169 * 298.55170 * 15 14 13 21 21 H 1.08998 * 109.47258 * 175.53631 * 1 2 3 22 22 H 1.08996 * 109.46912 * 295.54054 * 1 2 3 23 23 H 1.08998 * 109.47084 * 55.53739 * 1 2 3 24 24 H 1.09001 * 109.46612 * 240.00020 * 2 1 3 25 25 H 1.08991 * 109.47024 * 120.00213 * 2 1 3 26 26 H 0.97000 * 120.00268 * 179.97438 * 8 7 5 27 27 H 1.00895 * 111.00222 * 329.44288 * 13 3 2 28 28 H 1.09001 * 109.47334 * 65.20255 * 14 13 3 29 29 H 1.09003 * 109.47525 * 305.19884 * 14 13 3 30 30 H 1.09004 * 109.46731 * 60.69660 * 16 15 14 31 31 H 1.08993 * 109.47749 * 180.70108 * 16 15 14 32 32 H 1.09004 * 109.46529 * 300.70555 * 16 15 14 33 33 H 1.09004 * 110.48798 * 240.13286 * 17 15 14 34 34 H 1.08995 * 110.49108 * 2.77826 * 17 15 14 35 35 H 1.09000 * 110.90499 * 262.68086 * 18 17 15 36 36 H 1.09001 * 110.93856 * 139.09324 * 18 17 15 37 37 H 1.09009 * 110.61317 * 204.47575 * 19 18 17 38 38 H 1.08996 * 110.75427 * 81.54539 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5964 1.9847 -0.8350 5 6 3.5405 1.4447 -0.1402 6 1 4.1542 1.8863 0.6311 7 6 4.1298 0.8830 -1.2529 8 7 3.3826 0.3456 -2.1922 9 14 5.9898 0.8853 -1.4262 10 1 6.5938 0.1461 -0.2887 11 1 6.3688 0.2268 -2.7021 12 1 6.4852 2.2852 -1.4259 13 7 1.6651 2.0944 1.2618 14 6 1.5731 3.5509 1.0948 15 6 1.3092 4.2044 2.4528 16 6 2.4453 3.8687 3.4211 17 6 1.1932 5.7319 2.2856 18 6 -0.2187 6.0665 2.8255 19 6 -0.5256 4.8361 3.7166 20 8 0.0588 3.7366 2.9856 21 1 -0.3634 -1.0245 -0.0800 22 1 -0.3633 0.4431 0.9272 23 1 -0.3633 0.5815 -0.8473 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.7971 -0.0493 -2.9752 27 1 0.8014 1.7165 1.6214 28 1 0.7563 3.7877 0.4130 29 1 2.5096 3.9296 0.6853 30 1 3.3855 4.2528 3.0251 31 1 2.2448 4.3268 4.3895 32 1 2.5152 2.7872 3.5381 33 1 1.9571 6.2393 2.8749 34 1 1.2750 6.0080 1.2344 35 1 -0.9381 6.1457 2.0104 36 1 -0.2025 6.9814 3.4178 37 1 -1.6016 4.6978 3.8225 38 1 -0.0551 4.9402 4.6942 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087253319.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:57 Heat of formation + Delta-G solvation = -79.334342 kcal Electronic energy + Delta-G solvation = -16725.446254 eV Core-core repulsion = 14180.436853 eV Total energy + Delta-G solvation = -2545.009402 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.74003 -37.95004 -34.73453 -33.58688 -32.84612 -31.30239 -28.62214 -27.41391 -25.65600 -24.18935 -22.49766 -21.44599 -20.79033 -18.36513 -17.21629 -16.92474 -16.60542 -16.25884 -15.63971 -15.35994 -14.73796 -14.63755 -14.21401 -14.00001 -13.56748 -13.23280 -13.05956 -12.86804 -12.77916 -12.61536 -12.54039 -12.51661 -12.01467 -11.95702 -11.88288 -11.52765 -11.50973 -11.20069 -11.00510 -10.48848 -10.41484 -8.94955 -8.05311 -6.17858 1.41889 1.43862 1.51555 2.44600 3.00268 3.19083 3.60913 3.69872 3.98206 4.05868 4.21128 4.32754 4.47283 4.49980 4.56270 4.66658 4.69066 4.80165 4.85023 4.90523 4.94949 4.98402 5.06836 5.10954 5.17319 5.23583 5.31289 5.37018 5.54330 5.59170 5.75387 5.89761 6.15592 6.37622 6.53911 6.95982 7.02265 7.51207 8.97998 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030752 B = 0.007503 C = 0.006513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.305886 B = 3731.013060 C = 4298.062610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.120 4.120 3 C 0.224 3.776 4 H -0.036 1.036 5 C -0.511 4.511 6 H 0.051 0.949 7 C 0.008 3.992 8 N -0.922 5.922 9 Si 0.957 3.043 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.677 5.677 14 C 0.081 3.919 15 C 0.108 3.892 16 C -0.143 4.143 17 C -0.147 4.147 18 C -0.146 4.146 19 C 0.038 3.962 20 O -0.392 6.392 21 H 0.059 0.941 22 H 0.053 0.947 23 H 0.034 0.966 24 H 0.069 0.931 25 H 0.036 0.964 26 H 0.260 0.740 27 H 0.328 0.672 28 H 0.008 0.992 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.240 10.020 10.052 15.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.159 4.159 3 C 0.115 3.885 4 H -0.019 1.019 5 C -0.550 4.550 6 H 0.070 0.930 7 C -0.190 4.190 8 N -0.562 5.562 9 Si 0.783 3.217 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.198 1.198 13 N -0.309 5.309 14 C -0.049 4.049 15 C 0.068 3.932 16 C -0.201 4.201 17 C -0.185 4.185 18 C -0.184 4.184 19 C -0.038 4.038 20 O -0.312 6.312 21 H 0.078 0.922 22 H 0.072 0.928 23 H 0.053 0.947 24 H 0.087 0.913 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.147 0.853 28 H 0.026 0.974 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.659 9.733 10.084 15.114 hybrid contribution 0.257 -0.024 -1.077 1.108 sum -5.402 9.709 9.007 14.303 Atomic orbital electron populations 1.21733 0.96510 1.01063 1.00226 1.21584 0.94049 0.99098 1.01142 1.18943 0.94167 0.90623 0.84723 1.01877 1.21446 0.92660 1.36687 1.04201 0.93041 1.25714 1.02431 0.95292 0.95540 1.70002 1.36382 1.39944 1.09865 0.85627 0.80572 0.78295 0.77202 1.19836 1.20912 1.19827 1.60552 1.37108 1.03025 1.30190 1.21945 0.98708 0.89741 0.94523 1.22177 0.85079 0.93352 0.92579 1.21988 0.97232 1.02420 0.98445 1.23022 0.99077 0.93620 1.02760 1.23098 0.95759 0.99471 1.00023 1.23744 0.99560 0.85352 0.95183 1.88885 1.34754 1.37137 1.70469 0.92246 0.92836 0.94675 0.91275 0.94563 0.93064 0.85350 0.97406 0.91837 0.92204 0.91525 0.92871 0.88879 0.91001 0.90938 0.87796 0.88080 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.60 9.67 71.98 0.70 -4.91 16 2 C -0.12 -5.98 5.36 30.59 0.16 -5.82 16 3 C 0.22 11.80 2.02 44.17 0.09 11.89 16 4 H -0.04 -2.13 7.85 -2.39 -0.02 -2.15 16 5 C -0.51 -29.27 8.56 25.60 0.22 -29.05 16 6 H 0.05 2.97 7.81 -2.91 -0.02 2.94 16 7 C 0.01 0.46 5.29 84.66 0.45 0.91 16 8 N -0.92 -54.30 11.29 21.45 0.24 -54.06 16 9 Si 0.96 44.87 29.54 68.60 2.03 46.89 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 13 N -0.68 -30.61 5.50 -495.47 -2.73 -33.34 16 14 C 0.08 3.25 4.43 86.30 0.38 3.63 16 15 C 0.11 3.38 0.94 -10.42 -0.01 3.37 16 16 C -0.14 -4.40 8.47 71.98 0.61 -3.79 16 17 C -0.15 -3.51 6.28 31.59 0.20 -3.31 16 18 C -0.15 -2.78 7.15 31.89 0.23 -2.55 16 19 C 0.04 0.81 7.67 72.66 0.56 1.37 16 20 O -0.39 -12.40 10.37 -148.98 -1.54 -13.95 16 21 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 22 H 0.05 1.99 6.61 -2.39 -0.02 1.98 16 23 H 0.03 1.44 8.14 -2.39 -0.02 1.43 16 24 H 0.07 3.86 5.94 -2.39 -0.01 3.84 16 25 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 27 H 0.33 14.20 6.17 -89.70 -0.55 13.65 16 28 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.06 2.75 7.93 -2.39 -0.02 2.73 16 30 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.05 1.91 7.60 -2.38 -0.02 1.89 16 33 H 0.09 1.88 7.70 -2.38 -0.02 1.86 16 34 H 0.07 1.79 7.70 -2.39 -0.02 1.77 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -63.29 298.88 2.04 -61.25 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: 0.46 Total: 21.44 kcal Atomic # 6 Polarization: -31.83 SS G_CDS: 3.58 Total: -28.25 kcal Atomic # 7 Polarization: -84.91 SS G_CDS: -2.48 Total: -87.40 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -1.54 Total: -13.95 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -63.29 2.04 -61.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087253319.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.081 kcal (2) G-P(sol) polarization free energy of solvation -63.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds