Wall clock time and date at job start Mon Mar 30 2020 03:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46928 * 2 1 4 4 H 1.08996 * 109.47368 * 180.30466 * 3 2 1 5 5 C 1.50699 * 109.47160 * 300.30238 * 3 2 1 6 6 H 1.07999 * 120.00229 * 119.72407 * 5 3 2 7 7 C 1.37876 * 119.99909 * 300.00259 * 5 3 2 8 8 N 1.31508 * 120.00164 * 359.71841 * 7 5 3 9 9 Si 1.86799 * 119.99949 * 179.72354 * 7 5 3 10 10 H 1.48501 * 109.47550 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47211 * 119.99743 * 9 7 5 12 12 H 1.48499 * 109.47162 * 239.99691 * 9 7 5 13 13 N 1.46900 * 109.47451 * 60.30268 * 3 2 1 14 14 C 1.48538 * 111.00034 * 59.75332 * 13 3 2 15 15 C 1.54931 * 103.22561 * 159.72462 * 14 13 3 16 16 C 1.54590 * 102.92489 * 322.58560 * 15 14 13 17 17 H 1.09002 * 110.31011 * 263.04517 * 16 15 14 18 18 C 1.52996 * 110.39550 * 140.91822 * 16 15 14 19 19 C 1.52998 * 109.46933 * 69.23784 * 18 16 15 20 20 O 1.42907 * 109.46800 * 180.02562 * 19 18 16 21 21 C 1.47900 * 111.00519 * 177.15451 * 13 3 2 22 22 H 1.09004 * 109.47067 * 185.09786 * 1 2 3 23 23 H 1.09007 * 109.47030 * 305.08619 * 1 2 3 24 24 H 1.08991 * 109.47336 * 65.09114 * 1 2 3 25 25 H 1.08997 * 109.47000 * 240.00288 * 2 1 3 26 26 H 1.08999 * 109.47395 * 119.99963 * 2 1 3 27 27 H 0.97006 * 120.00630 * 179.97438 * 8 7 5 28 28 H 1.08997 * 110.66641 * 278.15953 * 14 13 3 29 29 H 1.09004 * 110.66347 * 41.28802 * 14 13 3 30 30 H 1.09002 * 110.72168 * 204.23280 * 15 14 13 31 31 H 1.09000 * 110.87817 * 81.01997 * 15 14 13 32 32 H 1.08998 * 109.47359 * 189.23687 * 18 16 15 33 33 H 1.08999 * 109.47143 * 309.23762 * 18 16 15 34 34 H 1.09007 * 109.47165 * 299.99499 * 19 18 16 35 35 H 1.08996 * 109.47605 * 60.00673 * 19 18 16 36 36 H 0.96701 * 113.99530 * 179.97438 * 20 19 18 37 37 H 1.09003 * 109.91227 * 333.50619 * 21 13 3 38 38 H 1.08989 * 109.92127 * 94.59883 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1299 1.4426 -0.0055 5 6 1.5315 2.1551 -1.2267 6 1 0.9074 3.0304 -1.1230 7 6 1.8583 1.6862 -2.4814 8 7 2.6183 0.6204 -2.6077 9 14 1.2217 2.5649 -4.0019 10 1 0.3937 3.7275 -3.5917 11 1 2.3693 3.0372 -4.8176 12 1 0.3955 1.6284 -4.8054 13 7 1.5563 2.1330 1.2030 14 6 2.0338 1.4539 2.4348 15 6 1.9020 2.5526 3.5191 16 6 2.3074 3.8373 2.7607 17 1 3.3560 4.0705 2.9451 18 6 1.4208 5.0095 3.1857 19 6 1.7453 5.3968 4.6299 20 8 0.9168 6.4914 5.0271 21 6 2.0859 3.5122 1.2718 22 1 -0.3633 -1.0236 0.0913 23 1 -0.3633 0.5907 0.8410 24 1 -0.3633 0.4328 -0.9320 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.8480 0.2903 -3.4905 28 1 1.4001 0.5998 2.6735 29 1 3.0732 1.1443 2.3250 30 1 2.5851 2.3616 4.3467 31 1 0.8750 2.6238 3.8771 32 1 1.6058 5.8611 2.5309 33 1 0.3732 4.7172 3.1145 34 1 1.5602 4.5453 5.2848 35 1 2.7929 5.6892 4.7011 36 1 1.0683 6.7903 5.9342 37 1 3.0318 3.5739 0.7336 38 1 1.3670 4.2080 0.8396 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123316252.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:41 Heat of formation + Delta-G solvation = -62.514683 kcal Electronic energy + Delta-G solvation = -16591.593728 eV Core-core repulsion = 14047.313681 eV Total energy + Delta-G solvation = -2544.280047 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.74376 -36.90136 -34.73174 -32.19662 -30.76289 -29.14324 -27.15907 -25.82462 -23.34694 -22.23050 -21.15593 -19.55205 -18.87730 -17.30641 -16.04571 -15.51524 -15.13478 -14.89595 -14.19083 -13.70336 -13.30100 -13.07443 -12.73687 -12.26540 -12.15077 -11.69589 -11.53553 -11.28191 -11.09373 -10.92164 -10.59752 -10.50167 -10.40293 -10.25953 -10.16380 -9.94557 -9.84120 -9.62103 -9.32153 -8.78286 -8.38156 -7.18251 -5.97305 -4.00202 3.31516 3.39761 3.44635 4.19471 4.44521 4.95533 5.03811 5.16134 5.21992 5.34181 5.37422 5.53477 5.61277 5.87458 5.91607 5.98092 6.24785 6.28543 6.37203 6.42975 6.47825 6.57902 6.65639 6.74130 6.76615 6.83886 7.16286 7.30456 7.43769 7.55986 7.65948 7.75559 7.88288 8.17040 8.37889 8.60808 9.05864 9.63874 11.09470 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031324 B = 0.007031 C = 0.006181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.662975 B = 3981.363944 C = 4528.670251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.110 4.110 3 C 0.208 3.792 4 H -0.002 1.002 5 C -0.493 4.493 6 H 0.061 0.939 7 C 0.059 3.941 8 N -0.894 5.894 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.507 5.507 14 C 0.035 3.965 15 C -0.119 4.119 16 C -0.099 4.099 17 H 0.066 0.934 18 C -0.107 4.107 19 C 0.075 3.925 20 O -0.577 6.577 21 C 0.058 3.942 22 H 0.014 0.986 23 H 0.046 0.954 24 H 0.054 0.946 25 H 0.090 0.910 26 H 0.012 0.988 27 H 0.259 0.741 28 H 0.071 0.929 29 H 0.032 0.968 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.045 0.955 35 H 0.041 0.959 36 H 0.374 0.626 37 H 0.041 0.959 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.116 5.004 12.483 13.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.148 4.148 3 C 0.101 3.899 4 H 0.015 0.985 5 C -0.532 4.532 6 H 0.079 0.921 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.232 5.232 14 C -0.093 4.093 15 C -0.157 4.157 16 C -0.118 4.118 17 H 0.085 0.915 18 C -0.144 4.144 19 C -0.002 4.002 20 O -0.382 6.382 21 C -0.070 4.070 22 H 0.033 0.967 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.108 0.892 26 H 0.031 0.969 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.220 0.780 37 H 0.060 0.940 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.826 4.809 11.663 12.642 hybrid contribution 0.934 0.369 -0.351 1.064 sum 0.108 5.178 11.311 12.441 Atomic orbital electron populations 1.21460 0.97295 0.97204 1.01847 1.21525 0.95232 0.98128 0.99926 1.19466 0.92780 0.91155 0.86481 0.98459 1.21085 1.30588 1.11889 0.89601 0.92095 1.24900 0.95291 0.95111 0.98888 1.69891 1.37229 1.23227 1.23018 0.86535 0.78607 0.79746 0.83119 1.19752 1.21238 1.21083 1.64844 1.55343 1.00851 1.02184 1.23121 0.97949 0.96840 0.91432 1.22591 1.01076 0.94826 0.97182 1.22025 0.98475 0.94358 0.96963 0.91515 1.21571 1.01013 0.97972 0.93893 1.22292 0.92917 0.88128 0.96878 1.86507 1.64453 1.52476 1.34742 1.22631 0.98946 0.92924 0.92522 0.96700 0.93501 0.92686 0.89198 0.96937 0.93143 0.91030 0.94989 0.92374 0.91169 0.91423 0.90780 0.93678 0.94062 0.77957 0.94021 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.72 9.48 37.16 0.35 -2.36 16 2 C -0.11 -2.65 5.21 -26.73 -0.14 -2.79 16 3 C 0.21 5.20 1.44 -68.86 -0.10 5.10 16 4 H 0.00 -0.06 7.99 -51.93 -0.41 -0.47 16 5 C -0.49 -13.38 6.95 -34.44 -0.24 -13.62 16 6 H 0.06 1.68 7.43 -52.49 -0.39 1.29 16 7 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 8 N -0.89 -25.44 11.33 55.43 0.63 -24.81 16 9 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 13 N -0.51 -10.85 4.26 -223.89 -0.95 -11.80 16 14 C 0.03 0.63 5.40 -1.90 -0.01 0.62 16 15 C -0.12 -1.74 5.88 -24.88 -0.15 -1.88 16 16 C -0.10 -1.49 2.99 -89.27 -0.27 -1.76 16 17 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 18 C -0.11 -1.49 4.75 -26.73 -0.13 -1.61 16 19 C 0.08 0.86 6.92 37.16 0.26 1.12 16 20 O -0.58 -6.78 13.66 -35.23 -0.48 -7.26 16 21 C 0.06 1.13 5.46 -2.75 -0.02 1.12 16 22 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 23 H 0.05 1.02 7.46 -51.93 -0.39 0.63 16 24 H 0.05 1.34 7.40 -51.93 -0.38 0.95 16 25 H 0.09 2.42 6.09 -51.93 -0.32 2.11 16 26 H 0.01 0.27 6.91 -51.93 -0.36 -0.09 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.07 1.28 7.65 -51.93 -0.40 0.88 16 29 H 0.03 0.60 8.00 -51.93 -0.42 0.18 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.01 7.77 -51.93 -0.40 0.61 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.07 1.12 8.00 -51.93 -0.42 0.71 16 34 H 0.04 0.47 7.58 -51.93 -0.39 0.08 16 35 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.37 2.49 9.12 45.56 0.42 2.90 16 37 H 0.04 0.88 7.69 -51.93 -0.40 0.48 16 38 H 0.07 1.43 7.54 -51.94 -0.39 1.04 16 LS Contribution 295.54 15.07 4.45 4.45 Total: -1.00 -29.51 295.54 -7.80 -37.31 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -5.90 Total: 0.20 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -0.53 Total: -14.54 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: -0.33 Total: -36.61 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.48 Total: -7.26 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.51 -7.80 -37.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123316252.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.205 kcal (2) G-P(sol) polarization free energy of solvation -29.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds