Wall clock time and date at job start Mon Mar 30 2020 03:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46928 * 2 1 4 4 H 1.08996 * 109.47368 * 180.30466 * 3 2 1 5 5 C 1.50699 * 109.47160 * 300.30238 * 3 2 1 6 6 H 1.07999 * 120.00229 * 119.72407 * 5 3 2 7 7 C 1.37876 * 119.99909 * 300.00259 * 5 3 2 8 8 N 1.31508 * 120.00164 * 359.71841 * 7 5 3 9 9 Si 1.86799 * 119.99949 * 179.72354 * 7 5 3 10 10 H 1.48501 * 109.47550 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47211 * 119.99743 * 9 7 5 12 12 H 1.48499 * 109.47162 * 239.99691 * 9 7 5 13 13 N 1.46900 * 109.47451 * 60.30268 * 3 2 1 14 14 C 1.48538 * 111.00034 * 59.75332 * 13 3 2 15 15 C 1.54931 * 103.22561 * 159.72462 * 14 13 3 16 16 C 1.54590 * 102.92489 * 322.58560 * 15 14 13 17 17 H 1.09002 * 110.31011 * 263.04517 * 16 15 14 18 18 C 1.52996 * 110.39550 * 140.91822 * 16 15 14 19 19 C 1.52998 * 109.46933 * 69.23784 * 18 16 15 20 20 O 1.42907 * 109.46800 * 180.02562 * 19 18 16 21 21 C 1.47900 * 111.00519 * 177.15451 * 13 3 2 22 22 H 1.09004 * 109.47067 * 185.09786 * 1 2 3 23 23 H 1.09007 * 109.47030 * 305.08619 * 1 2 3 24 24 H 1.08991 * 109.47336 * 65.09114 * 1 2 3 25 25 H 1.08997 * 109.47000 * 240.00288 * 2 1 3 26 26 H 1.08999 * 109.47395 * 119.99963 * 2 1 3 27 27 H 0.97006 * 120.00630 * 179.97438 * 8 7 5 28 28 H 1.08997 * 110.66641 * 278.15953 * 14 13 3 29 29 H 1.09004 * 110.66347 * 41.28802 * 14 13 3 30 30 H 1.09002 * 110.72168 * 204.23280 * 15 14 13 31 31 H 1.09000 * 110.87817 * 81.01997 * 15 14 13 32 32 H 1.08998 * 109.47359 * 189.23687 * 18 16 15 33 33 H 1.08999 * 109.47143 * 309.23762 * 18 16 15 34 34 H 1.09007 * 109.47165 * 299.99499 * 19 18 16 35 35 H 1.08996 * 109.47605 * 60.00673 * 19 18 16 36 36 H 0.96701 * 113.99530 * 179.97438 * 20 19 18 37 37 H 1.09003 * 109.91227 * 333.50619 * 21 13 3 38 38 H 1.08989 * 109.92127 * 94.59883 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1299 1.4426 -0.0055 5 6 1.5315 2.1551 -1.2267 6 1 0.9074 3.0304 -1.1230 7 6 1.8583 1.6862 -2.4814 8 7 2.6183 0.6204 -2.6077 9 14 1.2217 2.5649 -4.0019 10 1 0.3937 3.7275 -3.5917 11 1 2.3693 3.0372 -4.8176 12 1 0.3955 1.6284 -4.8054 13 7 1.5563 2.1330 1.2030 14 6 2.0338 1.4539 2.4348 15 6 1.9020 2.5526 3.5191 16 6 2.3074 3.8373 2.7607 17 1 3.3560 4.0705 2.9451 18 6 1.4208 5.0095 3.1857 19 6 1.7453 5.3968 4.6299 20 8 0.9168 6.4914 5.0271 21 6 2.0859 3.5122 1.2718 22 1 -0.3633 -1.0236 0.0913 23 1 -0.3633 0.5907 0.8410 24 1 -0.3633 0.4328 -0.9320 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.8480 0.2903 -3.4905 28 1 1.4001 0.5998 2.6735 29 1 3.0732 1.1443 2.3250 30 1 2.5851 2.3616 4.3467 31 1 0.8750 2.6238 3.8771 32 1 1.6058 5.8611 2.5309 33 1 0.3732 4.7172 3.1145 34 1 1.5602 4.5453 5.2848 35 1 2.7929 5.6892 4.7011 36 1 1.0683 6.7903 5.9342 37 1 3.0318 3.5739 0.7336 38 1 1.3670 4.2080 0.8396 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123316252.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:41 Heat of formation + Delta-G solvation = -83.312394 kcal Electronic energy + Delta-G solvation = -16592.495584 eV Core-core repulsion = 14047.313681 eV Total energy + Delta-G solvation = -2545.181903 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.22213 -37.92788 -36.38497 -33.95154 -32.46965 -30.65836 -28.54019 -27.71909 -25.17911 -23.39810 -22.75453 -20.88338 -20.68166 -18.22639 -18.04750 -17.12929 -16.55180 -16.24196 -15.85707 -15.09757 -14.79222 -14.62862 -14.27775 -14.01503 -13.66064 -13.42826 -12.95240 -12.84652 -12.71782 -12.45918 -12.41638 -12.28326 -11.85034 -11.66680 -11.61985 -11.49714 -11.40863 -11.17425 -10.81615 -10.77585 -10.47956 -8.95542 -8.09367 -6.18850 1.38250 1.40930 1.52028 2.42290 3.18493 3.32712 3.49794 3.79575 3.88204 4.17311 4.36130 4.40428 4.50023 4.59331 4.62719 4.66967 4.75652 4.81199 4.87660 4.91493 5.03381 5.09046 5.14456 5.22191 5.25585 5.33601 5.39398 5.45161 5.54109 5.73331 5.76130 5.86686 6.29917 6.40696 6.70708 6.94066 6.97126 7.49071 8.96566 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031324 B = 0.007031 C = 0.006181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.662975 B = 3981.363944 C = 4528.670251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.106 4.106 3 C 0.215 3.785 4 H -0.043 1.043 5 C -0.503 4.503 6 H 0.049 0.951 7 C 0.014 3.986 8 N -0.920 5.920 9 Si 0.950 3.050 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.280 1.280 13 N -0.517 5.517 14 C 0.029 3.971 15 C -0.105 4.105 16 C -0.087 4.087 17 H 0.083 0.917 18 C -0.103 4.103 19 C 0.081 3.919 20 O -0.598 6.598 21 C 0.056 3.944 22 H 0.039 0.961 23 H 0.053 0.947 24 H 0.030 0.970 25 H 0.060 0.940 26 H 0.029 0.971 27 H 0.260 0.740 28 H 0.077 0.923 29 H 0.023 0.977 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.397 0.603 37 H 0.015 0.985 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.579 5.540 14.301 15.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.144 4.144 3 C 0.107 3.893 4 H -0.025 1.025 5 C -0.541 4.541 6 H 0.068 0.932 7 C -0.184 4.184 8 N -0.560 5.560 9 Si 0.777 3.223 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.205 1.205 13 N -0.241 5.241 14 C -0.099 4.099 15 C -0.143 4.143 16 C -0.106 4.106 17 H 0.101 0.899 18 C -0.141 4.141 19 C 0.003 3.997 20 O -0.407 6.407 21 C -0.073 4.073 22 H 0.058 0.942 23 H 0.072 0.928 24 H 0.049 0.951 25 H 0.078 0.922 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.095 0.905 29 H 0.042 0.958 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.247 0.753 37 H 0.034 0.966 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.291 5.357 13.512 14.593 hybrid contribution 1.093 0.216 -0.888 1.425 sum -0.199 5.572 12.624 13.801 Atomic orbital electron populations 1.21316 0.95765 0.98684 1.00771 1.21402 0.96463 0.97314 0.99227 1.19231 0.90246 0.92057 0.87721 1.02536 1.21257 1.30320 1.11656 0.90880 0.93230 1.25600 0.95517 0.95775 1.01527 1.70014 1.38099 1.24294 1.23585 0.85614 0.78125 0.78756 0.79827 1.19495 1.20778 1.20548 1.64743 1.55478 1.01727 1.02154 1.23232 0.97394 0.98155 0.91070 1.22560 1.02534 0.92455 0.96720 1.21909 0.99814 0.95371 0.93501 0.89899 1.21470 0.99714 0.96969 0.95979 1.22189 0.93649 0.88832 0.95010 1.86442 1.64773 1.52596 1.36872 1.22632 0.97028 0.91815 0.95787 0.94197 0.92782 0.95098 0.92174 0.95254 0.93095 0.90512 0.95827 0.88951 0.90370 0.92410 0.92266 0.92070 0.92472 0.75342 0.96611 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.80 9.48 71.98 0.68 -4.12 16 2 C -0.11 -5.16 5.21 30.59 0.16 -5.00 16 3 C 0.21 11.08 1.44 44.17 0.06 11.14 16 4 H -0.04 -2.50 7.99 -2.39 -0.02 -2.52 16 5 C -0.50 -28.05 6.95 25.60 0.18 -27.87 16 6 H 0.05 2.82 7.43 -2.91 -0.02 2.80 16 7 C 0.01 0.79 5.30 84.66 0.45 1.24 16 8 N -0.92 -53.61 11.33 21.45 0.24 -53.36 16 9 Si 0.95 44.69 29.54 68.60 2.03 46.71 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 N -0.52 -22.22 4.26 -862.25 -3.67 -25.90 16 14 C 0.03 1.03 5.40 86.65 0.47 1.50 16 15 C -0.10 -2.75 5.88 31.80 0.19 -2.56 16 16 C -0.09 -2.47 2.99 -9.92 -0.03 -2.50 16 17 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 18 C -0.10 -2.69 4.75 30.59 0.15 -2.55 16 19 C 0.08 1.58 6.92 71.98 0.50 2.08 16 20 O -0.60 -12.37 13.66 -148.98 -2.04 -14.40 16 21 C 0.06 2.20 5.46 86.45 0.47 2.68 16 22 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.05 2.29 7.46 -2.38 -0.02 2.27 16 24 H 0.03 1.49 7.40 -2.39 -0.02 1.47 16 25 H 0.06 3.31 6.09 -2.39 -0.01 3.30 16 26 H 0.03 1.29 6.91 -2.39 -0.02 1.28 16 27 H 0.26 14.42 8.31 -92.70 -0.77 13.64 16 28 H 0.08 2.59 7.65 -2.39 -0.02 2.57 16 29 H 0.02 0.86 8.00 -2.39 -0.02 0.84 16 30 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.08 1.97 7.77 -2.39 -0.02 1.95 16 32 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.06 1.71 8.00 -2.39 -0.02 1.69 16 34 H 0.06 1.02 7.58 -2.38 -0.02 1.00 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.40 4.02 9.12 -74.06 -0.68 3.34 16 37 H 0.02 0.68 7.69 -2.39 -0.02 0.66 16 38 H 0.06 2.37 7.54 -2.39 -0.02 2.35 16 Total: -1.00 -64.68 295.54 0.18 -64.51 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: 0.34 Total: 8.41 kcal Atomic # 6 Polarization: -29.24 SS G_CDS: 3.27 Total: -25.96 kcal Atomic # 7 Polarization: -75.83 SS G_CDS: -3.43 Total: -79.26 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -2.04 Total: -14.40 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -64.68 0.18 -64.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123316252.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.805 kcal (2) G-P(sol) polarization free energy of solvation -64.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds