Wall clock time and date at job start Mon Mar 30 2020 03:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47030 * 2 1 4 4 H 1.08996 * 109.47187 * 305.00563 * 3 2 1 5 5 C 1.50702 * 109.47097 * 185.00062 * 3 2 1 6 6 H 1.08001 * 120.00113 * 240.00439 * 5 3 2 7 7 C 1.37875 * 119.99631 * 59.99995 * 5 3 2 8 8 N 1.31509 * 120.00227 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99603 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47222 * 60.00196 * 9 7 5 11 11 H 1.48504 * 109.47197 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47002 * 299.99920 * 9 7 5 13 13 N 1.46904 * 109.46838 * 65.00503 * 3 2 1 14 14 C 1.47842 * 111.00238 * 59.15501 * 13 3 2 15 15 C 1.54909 * 104.79478 * 146.36255 * 14 13 3 16 16 C 1.55144 * 101.65226 * 322.93175 * 15 14 13 17 17 H 1.08999 * 110.69931 * 277.27016 * 16 15 14 18 18 C 1.53000 * 110.70322 * 154.03608 * 16 15 14 19 19 C 1.52999 * 109.46955 * 71.39815 * 18 16 15 20 20 O 1.42909 * 109.47064 * 179.97438 * 19 18 16 21 21 C 1.47440 * 110.99676 * 180.02562 * 13 3 2 22 22 H 1.09001 * 109.46728 * 299.99804 * 1 2 3 23 23 H 1.08996 * 109.47608 * 59.99541 * 1 2 3 24 24 H 1.08994 * 109.47077 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47380 * 240.00499 * 2 1 3 26 26 H 1.09002 * 109.47425 * 119.99779 * 2 1 3 27 27 H 0.97005 * 120.00147 * 179.97438 * 8 7 5 28 28 H 1.09004 * 110.37187 * 265.19138 * 14 13 3 29 29 H 1.09002 * 110.37256 * 27.42242 * 14 13 3 30 30 H 1.09002 * 110.99134 * 204.83439 * 15 14 13 31 31 H 1.09000 * 110.98552 * 81.02305 * 15 14 13 32 32 H 1.08999 * 109.46767 * 191.39521 * 18 16 15 33 33 H 1.08996 * 109.47272 * 311.39811 * 18 16 15 34 34 H 1.08994 * 109.47836 * 299.99481 * 19 18 16 35 35 H 1.09004 * 109.47583 * 60.00354 * 19 18 16 36 36 H 0.96700 * 113.99978 * 180.02562 * 20 19 18 37 37 H 1.09000 * 109.89463 * 117.33566 * 21 13 3 38 38 H 1.09000 * 109.88994 * 356.14383 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3376 -2.1733 9 14 6.0049 0.8801 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2168 -2.6505 12 1 6.5004 2.2800 -1.3808 13 7 1.6514 2.0993 1.2553 14 6 2.2075 1.3823 2.4226 15 6 2.5048 2.4909 3.4629 16 6 2.9985 3.6482 2.5551 17 1 4.0541 3.5244 2.3130 18 6 2.7500 5.0025 3.2221 19 6 3.7146 5.1771 4.3968 20 8 3.4829 6.4424 5.0195 21 6 2.1265 3.4946 1.2907 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.8291 -0.0602 -2.9503 28 1 1.4766 0.6769 2.8181 29 1 3.1250 0.8624 2.1468 30 1 3.2860 2.1772 4.1554 31 1 1.6000 2.7749 4.0002 32 1 2.9126 5.7999 2.4969 33 1 1.7233 5.0456 3.5856 34 1 3.5522 4.3798 5.1221 35 1 4.7414 5.1341 4.0334 36 1 4.0608 6.6212 5.7739 37 1 1.2762 4.1747 1.3415 38 1 2.7211 3.7065 0.4021 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123316519.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:44 Heat of formation + Delta-G solvation = -65.555388 kcal Electronic energy + Delta-G solvation = -16710.652546 eV Core-core repulsion = 14166.240644 eV Total energy + Delta-G solvation = -2544.411902 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.74728 -36.88934 -34.54580 -32.11730 -31.00562 -28.99608 -27.21715 -25.94312 -23.01273 -22.24613 -20.97619 -19.67839 -18.86341 -17.27203 -16.29782 -15.55484 -15.15500 -14.57983 -14.14410 -13.79950 -13.15719 -12.82405 -12.69647 -12.36623 -12.26894 -11.73435 -11.33563 -11.26296 -11.08333 -10.90432 -10.66711 -10.59242 -10.25079 -10.20879 -10.08699 -9.98606 -9.88078 -9.60564 -9.41809 -8.98832 -8.35229 -7.10685 -5.97972 -4.11214 3.26332 3.32119 3.33968 4.23393 4.38722 5.04019 5.10517 5.23341 5.27857 5.33777 5.43690 5.61773 5.76077 5.99246 6.07807 6.09000 6.31123 6.35019 6.38489 6.43864 6.49758 6.65371 6.70594 6.79645 6.86055 6.97481 7.10280 7.22226 7.35438 7.58502 7.64646 7.76963 8.01511 8.18847 8.33681 8.48174 8.99624 9.55498 11.00941 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023751 B = 0.008500 C = 0.006762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.630675 B = 3293.357967 C = 4140.065154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 C 0.207 3.793 4 H 0.038 0.962 5 C -0.541 4.541 6 H 0.056 0.944 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.528 5.528 14 C 0.048 3.952 15 C -0.126 4.126 16 C -0.104 4.104 17 H 0.074 0.926 18 C -0.106 4.106 19 C 0.075 3.925 20 O -0.578 6.578 21 C 0.058 3.942 22 H 0.047 0.953 23 H 0.039 0.961 24 H 0.024 0.976 25 H 0.092 0.908 26 H 0.031 0.969 27 H 0.261 0.739 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.045 0.955 35 H 0.043 0.957 36 H 0.374 0.626 37 H 0.055 0.945 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.066 5.042 10.287 11.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.150 4.150 3 C 0.101 3.899 4 H 0.056 0.944 5 C -0.580 4.580 6 H 0.074 0.926 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.252 5.252 14 C -0.080 4.080 15 C -0.164 4.164 16 C -0.123 4.123 17 H 0.092 0.908 18 C -0.144 4.144 19 C -0.002 4.002 20 O -0.383 6.383 21 C -0.071 4.071 22 H 0.066 0.934 23 H 0.058 0.942 24 H 0.044 0.956 25 H 0.110 0.890 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.221 0.779 37 H 0.073 0.927 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.069 4.958 9.619 10.875 hybrid contribution 2.508 -0.163 0.188 2.520 sum 1.439 4.795 9.807 11.011 Atomic orbital electron populations 1.21713 0.98884 0.98368 1.00603 1.21598 0.92258 0.99255 1.01918 1.19459 0.92952 0.91180 0.86345 0.94445 1.21739 0.92766 1.38037 1.05429 0.92582 1.24919 0.97677 0.95113 0.95761 1.69863 1.34823 1.38248 1.09391 0.86770 0.86374 0.78192 0.77346 1.20403 1.21239 1.20383 1.63910 1.56254 1.00946 1.04063 1.22877 0.98957 0.95707 0.90476 1.22803 0.99943 0.96171 0.97459 1.22337 1.00540 0.93094 0.96351 0.90798 1.21496 0.99323 0.97585 0.95954 1.22289 0.98528 0.84425 0.94996 1.86485 1.63948 1.38045 1.49856 1.22629 0.96164 0.91907 0.96389 0.93436 0.94185 0.95638 0.89019 0.95013 0.92854 0.92344 0.92084 0.92346 0.91713 0.91486 0.91298 0.93657 0.93880 0.77946 0.92676 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.80 37.16 0.36 -2.50 16 2 C -0.11 -2.66 5.10 -26.73 -0.14 -2.80 16 3 C 0.21 5.10 1.67 -68.86 -0.11 4.99 16 4 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 5 C -0.54 -14.19 6.23 -34.44 -0.21 -14.40 16 6 H 0.06 1.46 6.37 -52.49 -0.33 1.13 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.76 11.29 55.43 0.63 -24.13 16 9 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 13 N -0.53 -11.22 4.66 -224.64 -1.05 -12.27 16 14 C 0.05 0.93 4.96 -2.30 -0.01 0.91 16 15 C -0.13 -2.00 5.92 -24.59 -0.15 -2.15 16 16 C -0.10 -1.71 2.72 -88.77 -0.24 -1.95 16 17 H 0.07 1.29 7.91 -51.93 -0.41 0.88 16 18 C -0.11 -1.51 4.94 -26.73 -0.13 -1.64 16 19 C 0.08 0.93 6.94 37.16 0.26 1.19 16 20 O -0.58 -7.05 13.66 -35.23 -0.48 -7.53 16 21 C 0.06 1.12 5.78 -2.81 -0.02 1.10 16 22 H 0.05 0.95 7.75 -51.93 -0.40 0.54 16 23 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.09 2.43 5.95 -51.93 -0.31 2.13 16 26 H 0.03 0.74 6.85 -51.93 -0.36 0.38 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.06 1.09 8.10 -51.93 -0.42 0.67 16 29 H 0.06 1.32 6.20 -51.93 -0.32 1.00 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.98 7.94 -51.93 -0.41 0.56 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.07 1.00 8.00 -51.93 -0.42 0.58 16 34 H 0.05 0.52 7.68 -51.93 -0.40 0.12 16 35 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.37 2.70 9.12 45.56 0.42 3.11 16 37 H 0.05 1.01 7.82 -51.93 -0.41 0.60 16 38 H 0.06 1.41 6.84 -51.93 -0.36 1.06 16 LS Contribution 293.53 15.07 4.42 4.42 Total: -1.00 -28.41 293.53 -7.78 -36.19 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -5.80 Total: 2.94 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: -0.49 Total: -15.51 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: -0.42 Total: -36.41 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.48 Total: -7.53 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.41 -7.78 -36.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123316519.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.366 kcal (2) G-P(sol) polarization free energy of solvation -28.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds