Wall clock time and date at job start Mon Mar 30 2020 03:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47030 * 2 1 4 4 H 1.08996 * 109.47187 * 305.00563 * 3 2 1 5 5 C 1.50702 * 109.47097 * 185.00062 * 3 2 1 6 6 H 1.08001 * 120.00113 * 240.00439 * 5 3 2 7 7 C 1.37875 * 119.99631 * 59.99995 * 5 3 2 8 8 N 1.31509 * 120.00227 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99603 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47222 * 60.00196 * 9 7 5 11 11 H 1.48504 * 109.47197 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47002 * 299.99920 * 9 7 5 13 13 N 1.46904 * 109.46838 * 65.00503 * 3 2 1 14 14 C 1.47842 * 111.00238 * 59.15501 * 13 3 2 15 15 C 1.54909 * 104.79478 * 146.36255 * 14 13 3 16 16 C 1.55144 * 101.65226 * 322.93175 * 15 14 13 17 17 H 1.08999 * 110.69931 * 277.27016 * 16 15 14 18 18 C 1.53000 * 110.70322 * 154.03608 * 16 15 14 19 19 C 1.52999 * 109.46955 * 71.39815 * 18 16 15 20 20 O 1.42909 * 109.47064 * 179.97438 * 19 18 16 21 21 C 1.47440 * 110.99676 * 180.02562 * 13 3 2 22 22 H 1.09001 * 109.46728 * 299.99804 * 1 2 3 23 23 H 1.08996 * 109.47608 * 59.99541 * 1 2 3 24 24 H 1.08994 * 109.47077 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47380 * 240.00499 * 2 1 3 26 26 H 1.09002 * 109.47425 * 119.99779 * 2 1 3 27 27 H 0.97005 * 120.00147 * 179.97438 * 8 7 5 28 28 H 1.09004 * 110.37187 * 265.19138 * 14 13 3 29 29 H 1.09002 * 110.37256 * 27.42242 * 14 13 3 30 30 H 1.09002 * 110.99134 * 204.83439 * 15 14 13 31 31 H 1.09000 * 110.98552 * 81.02305 * 15 14 13 32 32 H 1.08999 * 109.46767 * 191.39521 * 18 16 15 33 33 H 1.08996 * 109.47272 * 311.39811 * 18 16 15 34 34 H 1.08994 * 109.47836 * 299.99481 * 19 18 16 35 35 H 1.09004 * 109.47583 * 60.00354 * 19 18 16 36 36 H 0.96700 * 113.99978 * 180.02562 * 20 19 18 37 37 H 1.09000 * 109.89463 * 117.33566 * 21 13 3 38 38 H 1.09000 * 109.88994 * 356.14383 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3376 -2.1733 9 14 6.0049 0.8801 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2168 -2.6505 12 1 6.5004 2.2800 -1.3808 13 7 1.6514 2.0993 1.2553 14 6 2.2075 1.3823 2.4226 15 6 2.5048 2.4909 3.4629 16 6 2.9985 3.6482 2.5551 17 1 4.0541 3.5244 2.3130 18 6 2.7500 5.0025 3.2221 19 6 3.7146 5.1771 4.3968 20 8 3.4829 6.4424 5.0195 21 6 2.1265 3.4946 1.2907 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.8291 -0.0602 -2.9503 28 1 1.4766 0.6769 2.8181 29 1 3.1250 0.8624 2.1468 30 1 3.2860 2.1772 4.1554 31 1 1.6000 2.7749 4.0002 32 1 2.9126 5.7999 2.4969 33 1 1.7233 5.0456 3.5856 34 1 3.5522 4.3798 5.1221 35 1 4.7414 5.1341 4.0334 36 1 4.0608 6.6212 5.7739 37 1 1.2762 4.1747 1.3415 38 1 2.7211 3.7065 0.4021 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123316519.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:43 Heat of formation + Delta-G solvation = -85.476047 kcal Electronic energy + Delta-G solvation = -16711.516371 eV Core-core repulsion = 14166.240644 eV Total energy + Delta-G solvation = -2545.275726 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.29434 -37.93949 -36.17898 -33.94317 -32.61181 -30.52848 -28.73989 -27.70623 -24.80528 -23.48644 -22.61712 -21.02182 -20.70115 -18.38183 -18.11784 -17.17387 -16.52440 -16.01868 -15.84406 -15.15599 -14.72322 -14.38861 -14.20581 -14.02510 -13.88267 -13.22747 -12.98674 -12.87010 -12.75798 -12.51921 -12.30987 -12.19717 -11.92661 -11.70398 -11.60447 -11.55601 -11.39143 -11.21408 -10.87659 -10.81291 -10.41855 -8.90475 -8.01449 -6.23615 1.37531 1.38169 1.45231 2.39956 3.16168 3.30515 3.57087 3.80211 3.97229 4.14633 4.35405 4.43290 4.57772 4.59785 4.65596 4.71924 4.76336 4.87239 4.91111 4.99411 5.06302 5.12936 5.16505 5.21546 5.29414 5.34398 5.45888 5.48881 5.57128 5.64158 5.80618 6.06413 6.22432 6.43954 6.64280 6.92865 6.98211 7.46299 8.93328 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023751 B = 0.008500 C = 0.006762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.630675 B = 3293.357967 C = 4140.065154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.107 4.107 3 C 0.215 3.785 4 H -0.003 1.003 5 C -0.545 4.545 6 H 0.054 0.946 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.944 3.056 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.531 5.531 14 C 0.045 3.955 15 C -0.112 4.112 16 C -0.094 4.094 17 H 0.062 0.938 18 C -0.100 4.100 19 C 0.079 3.921 20 O -0.595 6.595 21 C 0.054 3.946 22 H 0.056 0.944 23 H 0.031 0.969 24 H 0.046 0.954 25 H 0.061 0.939 26 H 0.032 0.968 27 H 0.261 0.739 28 H 0.067 0.933 29 H 0.035 0.965 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.047 0.953 36 H 0.397 0.603 37 H 0.066 0.934 38 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.319 5.460 12.429 13.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.015 0.985 5 C -0.584 4.584 6 H 0.072 0.928 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.771 3.229 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.254 5.254 14 C -0.083 4.083 15 C -0.150 4.150 16 C -0.113 4.113 17 H 0.080 0.920 18 C -0.138 4.138 19 C 0.002 3.998 20 O -0.403 6.403 21 C -0.074 4.074 22 H 0.075 0.925 23 H 0.050 0.950 24 H 0.065 0.935 25 H 0.080 0.920 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.053 0.947 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.246 0.754 37 H 0.085 0.915 38 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -0.675 5.388 11.791 12.982 hybrid contribution 2.353 -0.253 -0.467 2.413 sum 1.678 5.136 11.324 12.547 Atomic orbital electron populations 1.21577 0.96397 0.99805 1.00607 1.21445 0.94454 0.98245 1.00386 1.19203 0.91927 0.91417 0.86755 0.98465 1.21974 0.93796 1.37370 1.05236 0.92804 1.25633 1.01715 0.95086 0.95647 1.70001 1.36318 1.39103 1.09808 0.85825 0.81569 0.78190 0.77359 1.19725 1.21081 1.20054 1.63853 1.56473 1.01733 1.03358 1.22912 0.97887 0.96796 0.90673 1.22760 1.01452 0.94086 0.96682 1.22189 0.99044 0.94979 0.95118 0.91985 1.21382 1.00135 0.95681 0.96593 1.22170 0.97960 0.85124 0.94561 1.86420 1.64997 1.37818 1.51098 1.22658 0.96772 0.91120 0.96844 0.92493 0.95010 0.93467 0.92026 0.94895 0.93019 0.91427 0.94670 0.89958 0.90007 0.92248 0.91095 0.92162 0.93446 0.75375 0.91543 0.94870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.17 9.80 71.98 0.71 -4.46 16 2 C -0.11 -5.15 5.10 30.60 0.16 -5.00 16 3 C 0.21 10.84 1.67 44.17 0.07 10.91 16 4 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 5 C -0.54 -29.20 6.23 25.60 0.16 -29.04 16 6 H 0.05 2.85 6.37 -2.91 -0.02 2.83 16 7 C 0.02 1.03 5.29 84.65 0.45 1.48 16 8 N -0.91 -52.46 11.29 21.45 0.24 -52.22 16 9 Si 0.94 43.33 29.54 68.60 2.03 45.36 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 13 N -0.53 -22.52 4.66 -864.63 -4.03 -26.55 16 14 C 0.05 1.69 4.96 86.77 0.43 2.12 16 15 C -0.11 -3.25 5.92 31.98 0.19 -3.06 16 16 C -0.09 -2.94 2.72 -9.60 -0.03 -2.97 16 17 H 0.06 2.10 7.91 -2.39 -0.02 2.08 16 18 C -0.10 -2.64 4.94 30.59 0.15 -2.49 16 19 C 0.08 1.72 6.94 71.98 0.50 2.22 16 20 O -0.59 -12.71 13.66 -148.98 -2.04 -14.75 16 21 C 0.05 2.12 5.78 86.66 0.50 2.62 16 22 H 0.06 2.20 7.75 -2.39 -0.02 2.18 16 23 H 0.03 1.31 8.14 -2.39 -0.02 1.30 16 24 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.06 3.36 5.95 -2.39 -0.01 3.35 16 26 H 0.03 1.54 6.85 -2.39 -0.02 1.52 16 27 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 28 H 0.07 2.39 8.10 -2.38 -0.02 2.37 16 29 H 0.03 1.50 6.20 -2.39 -0.01 1.49 16 30 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.08 2.15 7.94 -2.39 -0.02 2.13 16 32 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.07 1.85 8.00 -2.39 -0.02 1.84 16 34 H 0.06 1.14 7.68 -2.39 -0.02 1.12 16 35 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.40 4.44 9.12 -74.06 -0.68 3.76 16 37 H 0.07 2.41 7.82 -2.39 -0.02 2.39 16 38 H 0.03 1.48 6.84 -2.39 -0.02 1.47 16 Total: -1.00 -61.47 293.53 -0.16 -61.64 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.35 Total: 14.18 kcal Atomic # 6 Polarization: -30.95 SS G_CDS: 3.29 Total: -27.66 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -3.79 Total: -78.76 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -2.04 Total: -14.75 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -61.47 -0.16 -61.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123316519.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.841 kcal (2) G-P(sol) polarization free energy of solvation -61.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds