Wall clock time and date at job start Mon Mar 30 2020 03:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 110.99866 * 2 1 4 4 C 1.53000 * 109.46896 * 65.56862 * 3 2 1 5 5 C 1.50697 * 115.55489 * 54.77204 * 4 3 2 6 6 H 1.07998 * 119.99918 * 215.52159 * 5 4 3 7 7 C 1.37874 * 119.99901 * 35.24455 * 5 4 3 8 8 N 1.31514 * 120.00117 * 15.31191 * 7 5 4 9 9 Si 1.86799 * 119.99964 * 195.30914 * 7 5 4 10 10 H 1.48498 * 109.47459 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47248 * 120.00149 * 9 7 5 12 12 H 1.48505 * 109.47125 * 239.99938 * 9 7 5 13 13 C 1.53007 * 117.49790 * 200.44329 * 4 3 2 14 14 C 1.53008 * 117.49629 * 269.09906 * 4 3 2 15 15 C 1.46895 * 111.00230 * 236.04637 * 2 1 3 16 16 C 1.53001 * 109.47295 * 63.95493 * 15 2 1 17 17 C 1.53001 * 109.47251 * 183.95103 * 15 2 1 18 18 C 1.53004 * 109.47439 * 303.95322 * 15 2 1 19 19 O 1.42897 * 109.47334 * 180.02562 * 18 15 2 20 20 H 1.08994 * 109.47325 * 62.01165 * 1 2 3 21 21 H 1.09006 * 109.46941 * 182.00574 * 1 2 3 22 22 H 1.09000 * 109.46880 * 302.00448 * 1 2 3 23 23 H 1.08997 * 109.47242 * 305.56518 * 3 2 1 24 24 H 1.08997 * 109.46978 * 185.56109 * 3 2 1 25 25 H 0.96999 * 119.99990 * 183.94891 * 8 7 5 26 26 H 1.08991 * 117.50207 * 214.99791 * 13 4 3 27 27 H 1.08999 * 117.49477 * 0.02562 * 13 4 3 28 28 H 1.09003 * 117.49815 * 359.97438 * 14 4 3 29 29 H 1.08998 * 117.49725 * 144.97374 * 14 4 3 30 30 H 1.09001 * 109.47353 * 59.99804 * 16 15 2 31 31 H 1.08996 * 109.47471 * 180.02562 * 16 15 2 32 32 H 1.09004 * 109.46969 * 300.00286 * 16 15 2 33 33 H 1.08997 * 109.47309 * 60.00475 * 17 15 2 34 34 H 1.09005 * 109.47219 * 180.02562 * 17 15 2 35 35 H 1.08996 * 109.47361 * 300.00377 * 17 15 2 36 36 H 1.08999 * 109.46865 * 299.99995 * 18 15 2 37 37 H 1.09004 * 109.46667 * 59.99810 * 18 15 2 38 38 H 0.96699 * 113.99566 * 180.02562 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6211 2.0613 1.3133 5 6 2.0402 1.3406 2.5687 6 1 1.4092 1.3703 3.4446 7 6 3.2264 0.6384 2.5971 8 7 4.1290 0.8341 1.6608 9 14 3.5516 -0.5908 3.9655 10 1 2.3879 -0.6248 4.8873 11 1 3.7595 -1.9396 3.3802 12 1 4.7663 -0.1849 4.7173 13 6 1.6387 3.5911 1.3378 14 6 0.3048 2.8404 1.3520 15 6 1.9955 -0.7659 -1.1375 16 6 1.5870 -0.0836 -2.4446 17 6 3.5217 -0.8263 -1.0492 18 6 1.4261 -2.1857 -1.1038 19 8 1.9388 -2.9310 -2.2100 20 1 -0.3634 0.4822 -0.9074 21 1 -0.3633 -1.0271 0.0360 22 1 -0.3633 0.5447 0.8715 23 1 1.5676 1.9249 -0.8359 24 1 3.0805 1.3441 -0.0996 25 1 4.9383 0.2996 1.6480 26 1 1.9533 4.0761 2.2617 27 1 1.9165 4.1059 0.4181 28 1 -0.2943 2.8617 0.4416 29 1 -0.2583 2.8311 2.2852 30 1 1.9926 0.9278 -2.4688 31 1 1.9772 -0.6522 -3.2887 32 1 0.4996 -0.0406 -2.5076 33 1 3.8128 -1.3124 -0.1180 34 1 3.9124 -1.3942 -1.8935 35 1 3.9273 0.1851 -1.0732 36 1 1.7172 -2.6718 -0.1726 37 1 0.3388 -2.1427 -1.1667 38 1 1.6188 -3.8425 -2.2521 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133453949.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:46 Heat of formation + Delta-G solvation = -29.929581 kcal Electronic energy + Delta-G solvation = -17500.493658 eV Core-core repulsion = 14957.626607 eV Total energy + Delta-G solvation = -2542.867051 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.35638 -38.18712 -36.51752 -33.99015 -32.35947 -29.12491 -28.01079 -27.42278 -26.20312 -24.69265 -22.87381 -20.79252 -19.44884 -18.50747 -17.95803 -16.54754 -16.12256 -15.96531 -15.69769 -15.46104 -15.05866 -14.57760 -14.33154 -13.51403 -13.48470 -13.29337 -12.95694 -12.82904 -12.76501 -12.68509 -12.26184 -12.18615 -12.14714 -11.96836 -11.75175 -11.31532 -10.99729 -10.92465 -10.71533 -10.35364 -9.77925 -8.70378 -7.90591 -5.90562 1.45283 1.50862 1.57864 2.56773 2.96922 3.25600 3.72229 3.80642 4.02287 4.12411 4.36438 4.38402 4.50505 4.57562 4.62916 4.71998 4.77277 4.81928 4.90695 4.92120 4.98907 5.04473 5.11020 5.15319 5.20220 5.25477 5.41320 5.51017 5.55436 5.59916 5.77498 6.11748 6.49744 6.65863 6.73763 6.96944 7.05526 7.68796 9.12437 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.021755 B = 0.012776 C = 0.009667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.761410 B = 2191.105149 C = 2895.629261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.512 5.512 3 C 0.113 3.887 4 C 0.043 3.957 5 C -0.492 4.492 6 H 0.036 0.964 7 C 0.063 3.937 8 N -0.878 5.878 9 Si 0.926 3.074 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.291 1.291 13 C -0.212 4.212 14 C -0.194 4.194 15 C 0.104 3.896 16 C -0.163 4.163 17 C -0.109 4.109 18 C 0.097 3.903 19 O -0.580 6.580 20 H 0.021 0.979 21 H 0.069 0.931 22 H 0.062 0.938 23 H -0.007 1.007 24 H 0.096 0.904 25 H 0.255 0.745 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.043 0.957 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.035 0.965 34 H 0.057 0.943 35 H 0.045 0.955 36 H 0.039 0.961 37 H 0.059 0.941 38 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.403 -5.385 -7.105 10.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.236 5.236 3 C -0.015 4.015 4 C 0.042 3.958 5 C -0.529 4.529 6 H 0.055 0.945 7 C -0.139 4.139 8 N -0.515 5.515 9 Si 0.754 3.246 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.218 1.218 13 C -0.250 4.250 14 C -0.232 4.232 15 C 0.015 3.985 16 C -0.222 4.222 17 C -0.166 4.166 18 C 0.019 3.981 19 O -0.387 6.387 20 H 0.039 0.961 21 H 0.088 0.912 22 H 0.081 0.919 23 H 0.011 0.989 24 H 0.114 0.886 25 H 0.065 0.935 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -4.731 -5.100 -6.821 9.742 hybrid contribution -0.261 -0.478 0.394 0.672 sum -4.991 -5.578 -6.427 9.865 Atomic orbital electron populations 1.22467 0.88449 1.01390 1.00082 1.61818 1.06889 1.14689 1.40189 1.21508 1.01705 0.85941 0.92320 1.19039 0.93838 0.88036 0.94841 1.20380 1.04142 1.32065 0.96287 0.94532 1.25076 0.95009 0.96866 0.96974 1.69997 1.07947 1.38309 1.35251 0.86044 0.77115 0.80708 0.80704 1.20305 1.20894 1.21822 1.22970 1.02440 0.99623 0.99994 1.22903 0.90850 1.08913 1.00498 1.20970 0.95566 0.92807 0.89186 1.22275 1.01153 1.00207 0.98540 1.21546 0.94122 1.00956 0.99985 1.22015 0.96768 0.91019 0.88304 1.86382 1.74057 1.29378 1.48869 0.96052 0.91212 0.91920 0.98906 0.88574 0.93505 0.91520 0.91021 0.90022 0.90950 0.93833 0.91472 0.92381 0.94550 0.92400 0.93586 0.94267 0.92346 0.75561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.86 8.42 127.69 1.07 1.93 16 2 N -0.51 -21.00 4.20 -872.62 -3.66 -24.66 16 3 C 0.11 5.10 3.24 86.30 0.28 5.38 16 4 C 0.04 2.08 1.36 -52.92 -0.07 2.01 16 5 C -0.49 -26.45 8.72 25.60 0.22 -26.23 16 6 H 0.04 2.03 7.86 -2.91 -0.02 2.01 16 7 C 0.06 3.35 5.11 84.65 0.43 3.79 16 8 N -0.88 -47.16 10.89 21.45 0.23 -46.93 16 9 Si 0.93 43.54 29.57 68.60 2.03 45.57 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 12 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 13 C -0.21 -9.59 9.96 30.62 0.30 -9.28 16 14 C -0.19 -8.19 8.22 30.62 0.25 -7.94 16 15 C 0.10 3.76 0.54 3.53 0.00 3.77 16 16 C -0.16 -5.28 7.64 71.98 0.55 -4.73 16 17 C -0.11 -4.27 8.05 71.98 0.58 -3.69 16 18 C 0.10 2.95 5.56 71.98 0.40 3.35 16 19 O -0.58 -15.28 12.31 -148.98 -1.83 -17.12 16 20 H 0.02 0.70 6.50 -2.39 -0.02 0.68 16 21 H 0.07 2.16 6.12 -2.38 -0.01 2.15 16 22 H 0.06 2.42 6.01 -2.39 -0.01 2.41 16 23 H -0.01 -0.30 6.78 -2.39 -0.02 -0.32 16 24 H 0.10 4.86 3.77 -2.39 -0.01 4.85 16 25 H 0.26 13.33 8.32 -92.71 -0.77 12.56 16 26 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 27 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 28 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 29 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 30 H 0.04 1.50 6.62 -2.39 -0.02 1.48 16 31 H 0.07 2.05 7.68 -2.39 -0.02 2.03 16 32 H 0.06 1.74 6.54 -2.39 -0.02 1.72 16 33 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.06 2.06 7.68 -2.38 -0.02 2.05 16 35 H 0.05 1.96 6.21 -2.39 -0.01 1.95 16 36 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.06 1.57 6.30 -2.39 -0.02 1.55 16 38 H 0.40 6.29 9.12 -74.06 -0.68 5.61 16 Total: -1.00 -57.94 289.47 1.16 -56.79 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.37 Total: 18.01 kcal Atomic # 6 Polarization: -35.68 SS G_CDS: 4.03 Total: -31.66 kcal Atomic # 7 Polarization: -68.16 SS G_CDS: -3.43 Total: -71.59 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -1.83 Total: -17.12 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -57.94 1.16 -56.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133453949.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.858 kcal (2) G-P(sol) polarization free energy of solvation -57.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds