Wall clock time and date at job start Mon Mar 30 2020 03:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47182 * 2 1 4 4 H 1.09008 * 110.59471 * 303.51916 * 3 2 1 5 5 C 1.54937 * 110.66884 * 180.32765 * 3 2 1 6 6 C 1.54593 * 102.92356 * 204.15066 * 5 3 2 7 7 H 1.09002 * 110.39074 * 140.91488 * 6 5 3 8 8 C 1.52999 * 110.30953 * 263.04188 * 6 5 3 9 9 C 1.53995 * 105.14094 * 21.95873 * 6 5 3 10 10 H 1.08996 * 109.91716 * 241.87266 * 9 6 5 11 11 C 1.52999 * 109.91757 * 120.57552 * 9 6 5 12 12 O 1.42903 * 109.47040 * 179.27448 * 11 9 6 13 13 N 1.47906 * 107.05507 * 1.22337 * 9 6 5 14 14 C 1.46899 * 111.00032 * 214.15564 * 13 9 6 15 15 C 1.50695 * 109.47324 * 53.87418 * 14 13 9 16 16 H 1.08004 * 119.99734 * 356.51319 * 15 14 13 17 17 C 1.37876 * 120.00522 * 176.50847 * 15 14 13 18 18 N 1.31518 * 119.99436 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00365 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47292 * 60.00254 * 19 17 15 21 21 H 1.48500 * 109.47343 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47479 * 300.00183 * 19 17 15 23 23 H 1.08995 * 109.47490 * 284.68714 * 1 2 3 24 24 H 1.09010 * 109.46875 * 44.68127 * 1 2 3 25 25 H 1.08996 * 109.47597 * 164.68357 * 1 2 3 26 26 H 1.09001 * 109.46927 * 240.00425 * 2 1 3 27 27 H 1.08997 * 109.46879 * 119.99813 * 2 1 3 28 28 H 1.08997 * 110.72285 * 322.51204 * 5 3 2 29 29 H 1.08997 * 110.72190 * 85.79497 * 5 3 2 30 30 H 1.09005 * 109.47004 * 175.71159 * 8 6 5 31 31 H 1.08994 * 109.47324 * 295.71480 * 8 6 5 32 32 H 1.09002 * 109.47344 * 55.72012 * 8 6 5 33 33 H 1.09001 * 109.47328 * 299.26953 * 11 9 6 34 34 H 1.08997 * 109.47000 * 59.27150 * 11 9 6 35 35 H 0.96704 * 113.99837 * 179.97438 * 12 11 9 36 36 H 1.08996 * 109.47548 * 173.87624 * 14 13 9 37 37 H 1.09010 * 109.47134 * 293.87632 * 14 13 9 38 38 H 0.97001 * 119.99238 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6366 1.9918 -0.8507 5 6 3.5890 1.4749 -0.0083 6 6 3.9093 2.8555 0.6091 7 1 4.7724 2.7846 1.2710 8 6 4.1702 3.8830 -0.4941 9 6 2.6515 3.2394 1.4104 10 1 2.2168 4.1526 1.0042 11 6 3.0130 3.4401 2.8834 12 8 1.8430 3.8122 3.6146 13 7 1.6928 2.1213 1.2747 14 6 0.3092 2.6145 1.2486 15 6 0.1692 3.6613 0.1737 16 1 1.0347 3.9738 -0.3917 17 6 -1.0637 4.2202 -0.0880 18 7 -2.1175 3.8400 0.6009 19 14 -1.2371 5.5183 -1.4199 20 1 -0.8177 4.9475 -2.7251 21 1 -2.6536 5.9563 -1.5029 22 1 -0.3777 6.6837 -1.0903 23 1 -0.3634 0.2605 0.9940 24 1 -0.3633 0.7308 -0.7227 25 1 -0.3634 -0.9911 -0.2714 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.9949 0.6730 0.6084 29 1 3.9707 1.4101 -1.0272 30 1 4.3191 4.8660 -0.0473 31 1 5.0623 3.5985 -1.0520 32 1 3.3149 3.9166 -1.1690 33 1 3.4147 2.5114 3.2888 34 1 3.7613 4.2279 2.9698 35 1 1.9980 3.9559 4.5583 36 1 -0.3678 1.7863 1.0396 37 1 0.0610 3.0515 2.2159 38 1 -2.9849 4.2334 0.4170 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000142452759.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:21 Heat of formation + Delta-G solvation = -54.383145 kcal Electronic energy + Delta-G solvation = -17391.825058 eV Core-core repulsion = 14847.897622 eV Total energy + Delta-G solvation = -2543.927437 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.09503 -35.81866 -33.72077 -32.75355 -31.18911 -28.59718 -27.83966 -25.29676 -23.65180 -22.40331 -20.83857 -19.40236 -19.08397 -16.51875 -16.21139 -15.17743 -14.87911 -14.51358 -14.19333 -13.32980 -13.01583 -12.67607 -12.62797 -12.36706 -11.97881 -11.75424 -11.58549 -11.37532 -11.06987 -10.83874 -10.71270 -10.45120 -10.30999 -10.17178 -10.00372 -9.79763 -9.68075 -9.43052 -9.32710 -9.09392 -8.17525 -7.07434 -5.89359 -3.94257 3.33661 3.38803 3.40705 4.49748 4.80698 5.01416 5.18980 5.39755 5.41470 5.57919 5.74348 5.86263 5.90684 5.92652 5.98747 6.04001 6.14644 6.21091 6.25901 6.29829 6.46890 6.51481 6.62171 6.68624 6.73412 6.85660 7.03094 7.09398 7.21526 7.49814 7.75522 8.13782 8.26242 8.29185 8.47452 8.48994 9.16395 9.68533 11.16300 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.019847 B = 0.011524 C = 0.010491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.441928 B = 2429.141270 C = 2668.302430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.099 4.099 3 C 0.065 3.935 4 H 0.064 0.936 5 C -0.116 4.116 6 C -0.096 4.096 7 H 0.065 0.935 8 C -0.142 4.142 9 C 0.065 3.935 10 H 0.083 0.917 11 C 0.098 3.902 12 O -0.550 6.550 13 N -0.504 5.504 14 C 0.162 3.838 15 C -0.537 4.537 16 H 0.053 0.947 17 C 0.065 3.935 18 N -0.890 5.890 19 Si 0.881 3.119 20 H -0.279 1.279 21 H -0.288 1.288 22 H -0.279 1.279 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.032 0.968 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.037 0.963 34 H 0.029 0.971 35 H 0.360 0.640 36 H 0.053 0.947 37 H 0.040 0.960 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.891 -3.417 0.824 11.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.137 4.137 3 C -0.043 4.043 4 H 0.082 0.918 5 C -0.154 4.154 6 C -0.115 4.115 7 H 0.084 0.916 8 C -0.199 4.199 9 C -0.044 4.044 10 H 0.100 0.900 11 C 0.019 3.981 12 O -0.353 6.353 13 N -0.228 5.228 14 C 0.036 3.964 15 C -0.577 4.577 16 H 0.071 0.929 17 C -0.137 4.137 18 N -0.529 5.529 19 Si 0.709 3.291 20 H -0.205 1.205 21 H -0.213 1.213 22 H -0.204 1.204 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.204 0.796 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.431 -3.800 0.693 11.124 hybrid contribution 0.004 1.543 -0.897 1.785 sum 10.435 -2.257 -0.204 10.679 Atomic orbital electron populations 1.21961 0.95577 0.99665 1.03521 1.21322 0.96433 0.95833 1.00083 1.22712 0.92394 0.94875 0.94367 0.91781 1.22591 0.97068 0.96200 0.99534 1.21886 0.97533 0.95413 0.96662 0.91643 1.21849 1.01153 0.98417 0.98521 1.22424 0.92179 0.97484 0.92363 0.89963 1.22181 0.86556 0.96348 0.92993 1.86788 1.33923 1.91786 1.22759 1.64956 1.05421 1.22210 1.30200 1.20317 0.83811 0.95269 0.97008 1.21707 0.93746 1.22879 1.19333 0.92872 1.24899 0.96074 0.96628 0.96087 1.69940 0.99436 1.43068 1.40490 0.86842 0.76997 0.82566 0.82686 1.20472 1.21335 1.20449 0.91170 0.91925 0.94866 0.93306 0.92463 0.91795 0.92200 0.92968 0.93263 0.92175 0.94448 0.95312 0.79572 0.92887 0.94153 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 8.34 37.16 0.31 -2.60 16 2 C -0.10 -1.75 5.68 -26.73 -0.15 -1.90 16 3 C 0.07 1.27 2.31 -65.79 -0.15 1.12 16 4 H 0.06 1.43 6.59 -51.92 -0.34 1.09 16 5 C -0.12 -1.87 6.05 -24.87 -0.15 -2.02 16 6 C -0.10 -1.56 3.23 -89.26 -0.29 -1.84 16 7 H 0.07 0.94 7.69 -51.93 -0.40 0.54 16 8 C -0.14 -2.16 8.88 37.16 0.33 -1.83 16 9 C 0.06 1.29 2.10 -66.64 -0.14 1.15 16 10 H 0.08 1.93 5.27 -51.93 -0.27 1.66 16 11 C 0.10 1.72 6.47 37.16 0.24 1.96 16 12 O -0.55 -10.72 12.18 -35.23 -0.43 -11.15 16 13 N -0.50 -10.97 4.81 -216.21 -1.04 -12.01 16 14 C 0.16 4.23 4.79 -4.98 -0.02 4.20 16 15 C -0.54 -14.88 6.90 -34.44 -0.24 -15.12 16 16 H 0.05 1.46 6.03 -52.48 -0.32 1.14 16 17 C 0.06 1.86 5.46 -17.82 -0.10 1.76 16 18 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 19 Si 0.88 21.85 29.54 -169.99 -5.02 16.83 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 H 0.07 1.50 6.11 -51.93 -0.32 1.18 16 24 H 0.06 1.36 7.84 -51.92 -0.41 0.95 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.06 0.96 8.05 -51.93 -0.42 0.55 16 29 H 0.06 0.87 7.85 -51.93 -0.41 0.47 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.36 4.95 9.12 45.56 0.42 5.36 16 36 H 0.05 1.44 3.95 -51.93 -0.20 1.24 16 37 H 0.04 1.19 6.87 -51.92 -0.36 0.83 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 290.13 15.07 4.37 4.37 Total: -1.00 -30.77 290.13 -7.29 -38.06 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -5.54 Total: 4.91 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -0.36 Total: -15.11 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: -0.30 Total: -37.91 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: -0.43 Total: -11.15 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.77 -7.29 -38.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142452759.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.326 kcal (2) G-P(sol) polarization free energy of solvation -30.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds