Wall clock time and date at job start Mon Mar 30 2020 03:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47182 * 2 1 4 4 H 1.09008 * 110.59471 * 303.51916 * 3 2 1 5 5 C 1.54937 * 110.66884 * 180.32765 * 3 2 1 6 6 C 1.54593 * 102.92356 * 204.15066 * 5 3 2 7 7 H 1.09002 * 110.39074 * 140.91488 * 6 5 3 8 8 C 1.52999 * 110.30953 * 263.04188 * 6 5 3 9 9 C 1.53995 * 105.14094 * 21.95873 * 6 5 3 10 10 H 1.08996 * 109.91716 * 241.87266 * 9 6 5 11 11 C 1.52999 * 109.91757 * 120.57552 * 9 6 5 12 12 O 1.42903 * 109.47040 * 179.27448 * 11 9 6 13 13 N 1.47906 * 107.05507 * 1.22337 * 9 6 5 14 14 C 1.46899 * 111.00032 * 214.15564 * 13 9 6 15 15 C 1.50695 * 109.47324 * 53.87418 * 14 13 9 16 16 H 1.08004 * 119.99734 * 356.51319 * 15 14 13 17 17 C 1.37876 * 120.00522 * 176.50847 * 15 14 13 18 18 N 1.31518 * 119.99436 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00365 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47292 * 60.00254 * 19 17 15 21 21 H 1.48500 * 109.47343 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47479 * 300.00183 * 19 17 15 23 23 H 1.08995 * 109.47490 * 284.68714 * 1 2 3 24 24 H 1.09010 * 109.46875 * 44.68127 * 1 2 3 25 25 H 1.08996 * 109.47597 * 164.68357 * 1 2 3 26 26 H 1.09001 * 109.46927 * 240.00425 * 2 1 3 27 27 H 1.08997 * 109.46879 * 119.99813 * 2 1 3 28 28 H 1.08997 * 110.72285 * 322.51204 * 5 3 2 29 29 H 1.08997 * 110.72190 * 85.79497 * 5 3 2 30 30 H 1.09005 * 109.47004 * 175.71159 * 8 6 5 31 31 H 1.08994 * 109.47324 * 295.71480 * 8 6 5 32 32 H 1.09002 * 109.47344 * 55.72012 * 8 6 5 33 33 H 1.09001 * 109.47328 * 299.26953 * 11 9 6 34 34 H 1.08997 * 109.47000 * 59.27150 * 11 9 6 35 35 H 0.96704 * 113.99837 * 179.97438 * 12 11 9 36 36 H 1.08996 * 109.47548 * 173.87624 * 14 13 9 37 37 H 1.09010 * 109.47134 * 293.87632 * 14 13 9 38 38 H 0.97001 * 119.99238 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6366 1.9918 -0.8507 5 6 3.5890 1.4749 -0.0083 6 6 3.9093 2.8555 0.6091 7 1 4.7724 2.7846 1.2710 8 6 4.1702 3.8830 -0.4941 9 6 2.6515 3.2394 1.4104 10 1 2.2168 4.1526 1.0042 11 6 3.0130 3.4401 2.8834 12 8 1.8430 3.8122 3.6146 13 7 1.6928 2.1213 1.2747 14 6 0.3092 2.6145 1.2486 15 6 0.1692 3.6613 0.1737 16 1 1.0347 3.9738 -0.3917 17 6 -1.0637 4.2202 -0.0880 18 7 -2.1175 3.8400 0.6009 19 14 -1.2371 5.5183 -1.4199 20 1 -0.8177 4.9475 -2.7251 21 1 -2.6536 5.9563 -1.5029 22 1 -0.3777 6.6837 -1.0903 23 1 -0.3634 0.2605 0.9940 24 1 -0.3633 0.7308 -0.7227 25 1 -0.3634 -0.9911 -0.2714 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.9949 0.6730 0.6084 29 1 3.9707 1.4101 -1.0272 30 1 4.3191 4.8660 -0.0473 31 1 5.0623 3.5985 -1.0520 32 1 3.3149 3.9166 -1.1690 33 1 3.4147 2.5114 3.2888 34 1 3.7613 4.2279 2.9698 35 1 1.9980 3.9559 4.5583 36 1 -0.3678 1.7863 1.0396 37 1 0.0610 3.0515 2.2159 38 1 -2.9849 4.2334 0.4170 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000142452759.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:21 Heat of formation + Delta-G solvation = -77.459170 kcal Electronic energy + Delta-G solvation = -17392.825710 eV Core-core repulsion = 14847.897622 eV Total energy + Delta-G solvation = -2544.928088 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.63704 -37.29104 -35.41857 -34.56207 -32.96011 -30.07607 -29.48026 -27.16300 -25.13660 -24.16814 -22.41559 -20.86014 -20.74201 -18.29758 -17.95579 -16.95429 -16.47036 -16.06596 -15.87194 -14.84562 -14.45595 -14.37771 -14.16116 -13.95074 -13.59418 -13.42706 -13.15082 -13.00906 -12.79665 -12.74823 -12.42779 -11.94781 -11.87360 -11.72642 -11.64694 -11.51505 -11.29719 -11.07149 -10.98708 -10.71231 -10.29969 -8.92055 -8.06635 -6.20811 1.33074 1.34739 1.42005 2.39277 3.17705 3.47831 3.50047 3.86747 4.05382 4.21614 4.38614 4.45527 4.52119 4.54424 4.61159 4.70420 4.78943 4.79970 4.89550 4.94556 5.10846 5.14314 5.18171 5.26584 5.34288 5.36027 5.38989 5.53099 5.57165 5.65745 5.67314 5.97159 6.21459 6.45069 6.61846 7.02478 7.15254 7.45998 8.95887 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.019847 B = 0.011524 C = 0.010491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.441928 B = 2429.141270 C = 2668.302430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 C 0.058 3.942 4 H 0.028 0.972 5 C -0.105 4.105 6 C -0.090 4.090 7 H 0.097 0.903 8 C -0.139 4.139 9 C 0.055 3.945 10 H 0.038 0.962 11 C 0.097 3.903 12 O -0.587 6.587 13 N -0.504 5.504 14 C 0.179 3.821 15 C -0.536 4.536 16 H 0.051 0.949 17 C 0.009 3.991 18 N -0.927 5.927 19 Si 0.945 3.055 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.274 1.274 23 H 0.041 0.959 24 H 0.028 0.972 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.030 0.970 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.382 0.618 36 H 0.038 0.962 37 H -0.002 1.002 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.542 -4.010 0.116 14.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.131 4.131 3 C -0.051 4.051 4 H 0.047 0.953 5 C -0.143 4.143 6 C -0.109 4.109 7 H 0.115 0.885 8 C -0.196 4.196 9 C -0.054 4.054 10 H 0.056 0.944 11 C 0.019 3.981 12 O -0.393 6.393 13 N -0.227 5.227 14 C 0.052 3.948 15 C -0.575 4.575 16 H 0.069 0.931 17 C -0.189 4.189 18 N -0.568 5.568 19 Si 0.771 3.229 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.200 1.200 23 H 0.060 0.940 24 H 0.047 0.953 25 H 0.080 0.920 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.230 0.770 36 H 0.056 0.944 37 H 0.016 0.984 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 13.111 -4.393 -0.006 13.827 hybrid contribution -0.807 1.709 -0.628 1.992 sum 12.304 -2.684 -0.635 12.609 Atomic orbital electron populations 1.21830 0.97335 1.00084 1.00720 1.21333 0.94720 0.95044 1.02031 1.22807 0.95384 0.95103 0.91797 0.95345 1.22575 0.93696 0.96692 1.01317 1.21913 0.96508 0.95601 0.96879 0.88466 1.21826 1.01233 0.98545 0.98007 1.22570 0.93302 0.94889 0.94643 0.94366 1.22265 0.86411 0.98115 0.91287 1.86740 1.35644 1.92030 1.24913 1.64913 1.03433 1.22797 1.31595 1.19905 0.86582 0.94141 0.94177 1.21952 0.93612 1.22786 1.19176 0.93078 1.25712 0.95881 0.98902 0.98435 1.70076 0.99853 1.44578 1.42288 0.85814 0.77050 0.79920 0.80149 1.19491 1.20876 1.19976 0.94023 0.95312 0.92019 0.90312 0.91263 0.89742 0.90073 0.92752 0.90105 0.95104 0.92765 0.92500 0.77014 0.94408 0.98375 0.93116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.58 8.34 71.98 0.60 -4.98 16 2 C -0.09 -3.16 5.68 30.59 0.17 -2.99 16 3 C 0.06 2.21 2.31 45.26 0.10 2.31 16 4 H 0.03 1.29 6.59 -2.38 -0.02 1.28 16 5 C -0.10 -3.02 6.05 31.80 0.19 -2.83 16 6 C -0.09 -2.66 3.23 -9.92 -0.03 -2.69 16 7 H 0.10 2.32 7.69 -2.39 -0.02 2.30 16 8 C -0.14 -3.90 8.88 71.98 0.64 -3.26 16 9 C 0.06 2.17 2.10 45.06 0.09 2.27 16 10 H 0.04 1.84 5.27 -2.39 -0.01 1.83 16 11 C 0.10 3.28 6.47 71.98 0.47 3.74 16 12 O -0.59 -23.07 12.18 -148.98 -1.81 -24.88 16 13 N -0.50 -22.14 4.81 -837.97 -4.03 -26.18 16 14 C 0.18 9.82 4.79 85.56 0.41 10.23 16 15 C -0.54 -30.89 6.90 25.60 0.18 -30.72 16 16 H 0.05 2.91 6.03 -2.91 -0.02 2.89 16 17 C 0.01 0.53 5.46 84.65 0.46 0.99 16 18 N -0.93 -57.70 13.29 21.45 0.28 -57.41 16 19 Si 0.94 45.97 29.54 68.60 2.03 48.00 16 20 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 22 H -0.27 -13.05 7.11 99.48 0.71 -12.35 16 23 H 0.04 1.84 6.11 -2.39 -0.01 1.83 16 24 H 0.03 1.28 7.84 -2.38 -0.02 1.26 16 25 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.08 2.13 8.05 -2.39 -0.02 2.11 16 29 H 0.08 2.03 7.85 -2.39 -0.02 2.01 16 30 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.38 10.39 9.12 -74.05 -0.68 9.72 16 36 H 0.04 2.19 3.95 -2.39 -0.01 2.18 16 37 H 0.00 -0.12 6.87 -2.38 -0.02 -0.13 16 38 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -69.96 290.13 0.11 -69.85 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.36 Total: 18.54 kcal Atomic # 6 Polarization: -31.21 SS G_CDS: 3.29 Total: -27.92 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -3.75 Total: -83.59 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -1.81 Total: -24.88 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -69.96 0.11 -69.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142452759.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.612 kcal (2) G-P(sol) polarization free energy of solvation -69.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds