Wall clock time and date at job start Mon Mar 30 2020 03:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46790 * 2 1 4 4 H 1.09003 * 110.42031 * 300.91025 * 3 2 1 5 5 C 1.54906 * 110.36982 * 178.60168 * 3 2 1 6 6 C 1.55144 * 101.65167 * 204.10043 * 5 3 2 7 7 H 1.09000 * 110.70267 * 277.26667 * 6 5 3 8 8 C 1.53001 * 110.70489 * 154.03645 * 6 5 3 9 9 C 1.54316 * 103.02133 * 35.65364 * 6 5 3 10 10 H 1.09003 * 109.88844 * 97.12100 * 9 6 5 11 11 C 1.52994 * 109.88806 * 218.31259 * 9 6 5 12 12 O 1.42902 * 109.46993 * 185.22081 * 11 9 6 13 13 N 1.47446 * 107.23145 * 337.71572 * 9 6 5 14 14 C 1.46897 * 110.99982 * 236.74304 * 13 9 6 15 15 C 1.50698 * 109.47025 * 71.14101 * 14 13 9 16 16 H 1.07999 * 120.00209 * 0.34368 * 15 14 13 17 17 C 1.37881 * 119.99608 * 180.61392 * 15 14 13 18 18 N 1.31516 * 119.99563 * 179.72108 * 17 15 14 19 19 Si 1.86796 * 120.00233 * 359.72315 * 17 15 14 20 20 H 1.48504 * 109.47015 * 90.00039 * 19 17 15 21 21 H 1.48500 * 109.47469 * 209.99844 * 19 17 15 22 22 H 1.48498 * 109.47201 * 330.00526 * 19 17 15 23 23 H 1.08998 * 109.47163 * 293.10895 * 1 2 3 24 24 H 1.09000 * 109.47213 * 53.10434 * 1 2 3 25 25 H 1.09001 * 109.47218 * 173.10753 * 1 2 3 26 26 H 1.09000 * 109.46899 * 240.00058 * 2 1 3 27 27 H 1.08999 * 109.47026 * 120.00006 * 2 1 3 28 28 H 1.09003 * 110.99434 * 322.18896 * 5 3 2 29 29 H 1.09004 * 110.99420 * 86.01113 * 5 3 2 30 30 H 1.09000 * 109.47057 * 61.45385 * 8 6 5 31 31 H 1.09001 * 109.47229 * 181.45345 * 8 6 5 32 32 H 1.09002 * 109.47227 * 301.45658 * 8 6 5 33 33 H 1.08995 * 109.47322 * 305.21485 * 11 9 6 34 34 H 1.08997 * 109.47246 * 65.22021 * 11 9 6 35 35 H 0.96698 * 113.99969 * 180.02562 * 12 11 9 36 36 H 1.09000 * 109.47068 * 311.13819 * 14 13 9 37 37 H 1.09002 * 109.47228 * 191.13797 * 14 13 9 38 38 H 0.97001 * 119.99723 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6720 1.9760 -0.8764 5 6 3.5884 1.4670 0.0354 6 6 3.8657 2.8639 0.6511 7 1 3.8224 3.6381 -0.1149 8 6 5.2191 2.8816 1.3645 9 6 2.7131 3.0327 1.6633 10 1 3.0526 2.7557 2.6614 11 6 2.2256 4.4828 1.6597 12 8 1.2439 4.6578 2.6833 13 7 1.6229 2.1359 1.2374 14 6 0.3771 2.8851 1.0267 15 6 0.5030 3.7304 -0.2145 16 1 1.4152 3.7087 -0.7924 17 6 -0.5442 4.5358 -0.6092 18 7 -0.4322 5.2777 -1.6894 19 14 -2.1218 4.5733 0.3902 20 1 -2.0253 5.6311 1.4280 21 1 -3.2693 4.8631 -0.5067 22 1 -2.3251 3.2556 1.0440 23 1 -0.3633 0.4033 0.9452 24 1 -0.3634 0.6170 -0.8218 25 1 -0.3634 -1.0202 -0.1233 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.9770 0.6744 0.6749 29 1 4.0033 1.3942 -0.9699 30 1 6.0115 2.6737 0.6455 31 1 5.3817 3.8627 1.8108 32 1 5.2282 2.1211 2.1453 33 1 3.0674 5.1497 1.8460 34 1 1.7851 4.7157 0.6903 35 1 0.8894 5.5557 2.7389 36 1 0.1898 3.5280 1.8867 37 1 -0.4513 2.1866 0.9080 38 1 -1.1687 5.8446 -1.9669 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000142673543.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:25 Heat of formation + Delta-G solvation = -37.558463 kcal Electronic energy + Delta-G solvation = -17623.197995 eV Core-core repulsion = 15080.000132 eV Total energy + Delta-G solvation = -2543.197864 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.42646 -35.71187 -33.71482 -32.77804 -31.45599 -28.72473 -27.62237 -25.91938 -23.60731 -21.97866 -20.75087 -20.00518 -18.29389 -17.08204 -16.33245 -15.54297 -14.99412 -14.12092 -13.86368 -13.43546 -13.25835 -12.89191 -12.71285 -12.30952 -12.16664 -11.76152 -11.70088 -11.28513 -11.00399 -10.82880 -10.74071 -10.64392 -10.38397 -10.15020 -9.97086 -9.81027 -9.67729 -9.61007 -9.05918 -8.97566 -8.21556 -7.04673 -6.11699 -4.00430 3.28654 3.37509 3.45645 4.41716 4.84601 5.12505 5.17736 5.22587 5.32986 5.59228 5.78932 5.86286 5.93818 5.99640 6.04480 6.10225 6.21128 6.26099 6.28438 6.36453 6.47688 6.56747 6.60722 6.68642 6.78749 6.83515 6.97411 7.11889 7.22801 7.37000 7.53112 7.73893 8.23897 8.26062 8.48542 8.51494 8.90298 9.52020 10.99700 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023660 B = 0.012578 C = 0.010151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.144679 B = 2225.640928 C = 2757.612694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C 0.061 3.939 4 H 0.085 0.915 5 C -0.119 4.119 6 C -0.108 4.108 7 H 0.077 0.923 8 C -0.137 4.137 9 C 0.094 3.906 10 H 0.066 0.934 11 C 0.026 3.974 12 O -0.561 6.561 13 N -0.512 5.512 14 C 0.105 3.895 15 C -0.532 4.532 16 H 0.077 0.923 17 C 0.068 3.932 18 N -0.902 5.902 19 Si 0.879 3.121 20 H -0.277 1.277 21 H -0.292 1.292 22 H -0.263 1.263 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.034 0.966 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.014 0.986 34 H 0.127 0.873 35 H 0.363 0.637 36 H 0.082 0.918 37 H 0.028 0.972 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.222 -4.560 4.451 8.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.136 4.136 3 C -0.048 4.048 4 H 0.103 0.897 5 C -0.157 4.157 6 C -0.127 4.127 7 H 0.095 0.905 8 C -0.195 4.195 9 C -0.015 4.015 10 H 0.084 0.916 11 C -0.051 4.051 12 O -0.365 6.365 13 N -0.235 5.235 14 C -0.021 4.021 15 C -0.571 4.571 16 H 0.094 0.906 17 C -0.135 4.135 18 N -0.540 5.540 19 Si 0.707 3.293 20 H -0.203 1.203 21 H -0.219 1.219 22 H -0.188 1.188 23 H 0.082 0.918 24 H 0.075 0.925 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.032 0.968 34 H 0.144 0.856 35 H 0.209 0.791 36 H 0.099 0.901 37 H 0.046 0.954 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.138 -5.447 4.840 9.528 hybrid contribution -0.785 1.411 -0.373 1.657 sum 5.353 -4.036 4.467 8.056 Atomic orbital electron populations 1.21799 0.96108 0.99498 1.03026 1.21349 0.96143 0.96160 0.99950 1.22764 0.92162 0.94618 0.95224 0.89719 1.22772 0.96963 0.96213 0.99756 1.22327 0.94437 0.97971 0.97967 0.90496 1.21735 0.96456 1.01319 0.99946 1.22229 0.90809 0.91067 0.97349 0.91575 1.23691 0.89707 0.95679 0.96025 1.86421 1.58788 1.33542 1.57775 1.63829 1.03607 1.27007 1.29043 1.21228 0.88362 0.93986 0.98533 1.21663 1.01866 1.23878 1.09660 0.90571 1.24936 0.98419 0.95291 0.94804 1.69936 1.32600 1.27378 1.24105 0.86772 0.83196 0.79292 0.80039 1.20285 1.21867 1.18783 0.91789 0.92485 0.94677 0.93260 0.92745 0.91751 0.92030 0.93107 0.93067 0.92798 0.96759 0.85618 0.79128 0.90124 0.95403 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 8.65 37.16 0.32 -2.35 16 2 C -0.10 -1.70 5.67 -26.73 -0.15 -1.86 16 3 C 0.06 1.19 2.21 -66.19 -0.15 1.04 16 4 H 0.09 1.94 5.48 -51.93 -0.28 1.65 16 5 C -0.12 -1.98 5.94 -24.59 -0.15 -2.13 16 6 C -0.11 -1.83 3.07 -88.80 -0.27 -2.11 16 7 H 0.08 1.42 7.85 -51.93 -0.41 1.01 16 8 C -0.14 -1.90 9.14 37.16 0.34 -1.56 16 9 C 0.09 1.84 3.17 -66.73 -0.21 1.63 16 10 H 0.07 1.29 7.79 -51.93 -0.40 0.89 16 11 C 0.03 0.52 5.56 37.15 0.21 0.73 16 12 O -0.56 -11.35 10.63 -35.23 -0.37 -11.73 16 13 N -0.51 -10.83 4.87 -216.96 -1.06 -11.89 16 14 C 0.11 2.49 3.46 -4.98 -0.02 2.48 16 15 C -0.53 -13.80 5.22 -34.44 -0.18 -13.98 16 16 H 0.08 2.14 6.22 -52.49 -0.33 1.81 16 17 C 0.07 1.84 5.47 -17.82 -0.10 1.74 16 18 N -0.90 -26.19 13.96 55.43 0.77 -25.42 16 19 Si 0.88 21.19 27.46 -169.99 -4.67 16.52 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.26 -6.30 6.56 56.52 0.37 -5.93 16 23 H 0.06 1.26 6.28 -51.93 -0.33 0.93 16 24 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.06 1.00 7.96 -51.93 -0.41 0.58 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.72 8.09 -51.93 -0.42 0.30 16 33 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.13 2.98 4.08 -51.93 -0.21 2.77 16 35 H 0.36 6.13 9.12 61.28 0.56 6.69 16 36 H 0.08 1.98 3.96 -37.25 -0.15 1.84 16 37 H 0.03 0.69 4.62 -51.93 -0.24 0.45 16 38 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 280.13 15.07 4.22 4.22 Total: -1.00 -28.41 280.13 -6.63 -35.04 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -5.17 Total: 9.60 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -0.35 Total: -16.35 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: -0.28 Total: -37.30 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: -0.37 Total: -11.73 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.41 -6.63 -35.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142673543.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.520 kcal (2) G-P(sol) polarization free energy of solvation -28.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds