Wall clock time and date at job start Mon Mar 30 2020 03:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46790 * 2 1 4 4 H 1.09003 * 110.42031 * 300.91025 * 3 2 1 5 5 C 1.54906 * 110.36982 * 178.60168 * 3 2 1 6 6 C 1.55144 * 101.65167 * 204.10043 * 5 3 2 7 7 H 1.09000 * 110.70267 * 277.26667 * 6 5 3 8 8 C 1.53001 * 110.70489 * 154.03645 * 6 5 3 9 9 C 1.54316 * 103.02133 * 35.65364 * 6 5 3 10 10 H 1.09003 * 109.88844 * 97.12100 * 9 6 5 11 11 C 1.52994 * 109.88806 * 218.31259 * 9 6 5 12 12 O 1.42902 * 109.46993 * 185.22081 * 11 9 6 13 13 N 1.47446 * 107.23145 * 337.71572 * 9 6 5 14 14 C 1.46897 * 110.99982 * 236.74304 * 13 9 6 15 15 C 1.50698 * 109.47025 * 71.14101 * 14 13 9 16 16 H 1.07999 * 120.00209 * 0.34368 * 15 14 13 17 17 C 1.37881 * 119.99608 * 180.61392 * 15 14 13 18 18 N 1.31516 * 119.99563 * 179.72108 * 17 15 14 19 19 Si 1.86796 * 120.00233 * 359.72315 * 17 15 14 20 20 H 1.48504 * 109.47015 * 90.00039 * 19 17 15 21 21 H 1.48500 * 109.47469 * 209.99844 * 19 17 15 22 22 H 1.48498 * 109.47201 * 330.00526 * 19 17 15 23 23 H 1.08998 * 109.47163 * 293.10895 * 1 2 3 24 24 H 1.09000 * 109.47213 * 53.10434 * 1 2 3 25 25 H 1.09001 * 109.47218 * 173.10753 * 1 2 3 26 26 H 1.09000 * 109.46899 * 240.00058 * 2 1 3 27 27 H 1.08999 * 109.47026 * 120.00006 * 2 1 3 28 28 H 1.09003 * 110.99434 * 322.18896 * 5 3 2 29 29 H 1.09004 * 110.99420 * 86.01113 * 5 3 2 30 30 H 1.09000 * 109.47057 * 61.45385 * 8 6 5 31 31 H 1.09001 * 109.47229 * 181.45345 * 8 6 5 32 32 H 1.09002 * 109.47227 * 301.45658 * 8 6 5 33 33 H 1.08995 * 109.47322 * 305.21485 * 11 9 6 34 34 H 1.08997 * 109.47246 * 65.22021 * 11 9 6 35 35 H 0.96698 * 113.99969 * 180.02562 * 12 11 9 36 36 H 1.09000 * 109.47068 * 311.13819 * 14 13 9 37 37 H 1.09002 * 109.47228 * 191.13797 * 14 13 9 38 38 H 0.97001 * 119.99723 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6720 1.9760 -0.8764 5 6 3.5884 1.4670 0.0354 6 6 3.8657 2.8639 0.6511 7 1 3.8224 3.6381 -0.1149 8 6 5.2191 2.8816 1.3645 9 6 2.7131 3.0327 1.6633 10 1 3.0526 2.7557 2.6614 11 6 2.2256 4.4828 1.6597 12 8 1.2439 4.6578 2.6833 13 7 1.6229 2.1359 1.2374 14 6 0.3771 2.8851 1.0267 15 6 0.5030 3.7304 -0.2145 16 1 1.4152 3.7087 -0.7924 17 6 -0.5442 4.5358 -0.6092 18 7 -0.4322 5.2777 -1.6894 19 14 -2.1218 4.5733 0.3902 20 1 -2.0253 5.6311 1.4280 21 1 -3.2693 4.8631 -0.5067 22 1 -2.3251 3.2556 1.0440 23 1 -0.3633 0.4033 0.9452 24 1 -0.3634 0.6170 -0.8218 25 1 -0.3634 -1.0202 -0.1233 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.9770 0.6744 0.6749 29 1 4.0033 1.3942 -0.9699 30 1 6.0115 2.6737 0.6455 31 1 5.3817 3.8627 1.8108 32 1 5.2282 2.1211 2.1453 33 1 3.0674 5.1497 1.8460 34 1 1.7851 4.7157 0.6903 35 1 0.8894 5.5557 2.7389 36 1 0.1898 3.5280 1.8867 37 1 -0.4513 2.1866 0.9080 38 1 -1.1687 5.8446 -1.9669 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000142673543.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:24 Heat of formation + Delta-G solvation = -58.331959 kcal Electronic energy + Delta-G solvation = -17624.098802 eV Core-core repulsion = 15080.000132 eV Total energy + Delta-G solvation = -2544.098670 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.01827 -37.30362 -35.33427 -34.53106 -33.19628 -30.19361 -29.34858 -27.58470 -25.02928 -23.79853 -22.33053 -21.50449 -19.89498 -19.04492 -17.93911 -17.17030 -16.75598 -16.00005 -15.31221 -15.06074 -14.82249 -14.48200 -14.18059 -13.94513 -13.54056 -13.37091 -13.16417 -12.97290 -12.66703 -12.57767 -12.31759 -12.23876 -11.88395 -11.85389 -11.47911 -11.44683 -11.32567 -11.07835 -10.95473 -10.85847 -10.09984 -8.78885 -8.23498 -6.12631 1.35110 1.39233 1.51112 2.39193 3.09859 3.33121 3.63838 3.77717 3.92898 4.23052 4.34728 4.47471 4.53871 4.60427 4.64386 4.73986 4.76613 4.84404 4.93163 5.04720 5.09359 5.16518 5.21380 5.21583 5.31935 5.35043 5.40413 5.43404 5.57083 5.67377 5.69306 5.79778 6.28028 6.53070 6.60004 6.82464 6.99748 7.41109 8.91016 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023660 B = 0.012578 C = 0.010151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.144679 B = 2225.640928 C = 2757.612694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 C 0.056 3.944 4 H 0.042 0.958 5 C -0.110 4.110 6 C -0.105 4.105 7 H 0.054 0.946 8 C -0.129 4.129 9 C 0.088 3.912 10 H 0.075 0.925 11 C 0.032 3.968 12 O -0.570 6.570 13 N -0.515 5.515 14 C 0.116 3.884 15 C -0.505 4.505 16 H 0.045 0.955 17 C 0.014 3.986 18 N -0.947 5.947 19 Si 0.933 3.067 20 H -0.262 1.262 21 H -0.295 1.295 22 H -0.260 1.260 23 H 0.045 0.955 24 H 0.029 0.971 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.035 0.965 34 H 0.089 0.911 35 H 0.377 0.623 36 H 0.079 0.921 37 H 0.017 0.983 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.316 -5.867 5.975 11.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.132 4.132 3 C -0.052 4.052 4 H 0.060 0.940 5 C -0.148 4.148 6 C -0.124 4.124 7 H 0.072 0.928 8 C -0.186 4.186 9 C -0.020 4.020 10 H 0.093 0.907 11 C -0.045 4.045 12 O -0.377 6.377 13 N -0.238 5.238 14 C -0.011 4.011 15 C -0.544 4.544 16 H 0.063 0.937 17 C -0.183 4.183 18 N -0.589 5.589 19 Si 0.759 3.241 20 H -0.187 1.187 21 H -0.222 1.222 22 H -0.185 1.185 23 H 0.064 0.936 24 H 0.048 0.952 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.105 0.895 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.053 0.947 34 H 0.106 0.894 35 H 0.225 0.775 36 H 0.097 0.903 37 H 0.035 0.965 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.242 -6.755 6.383 11.783 hybrid contribution -1.059 1.805 -0.859 2.262 sum 6.184 -4.951 5.524 9.657 Atomic orbital electron populations 1.21735 0.96938 1.00521 1.00828 1.21348 0.95364 0.94828 1.01617 1.22772 0.94507 0.95235 0.92729 0.93979 1.22758 0.94495 0.96569 1.00987 1.22295 0.95545 0.97543 0.97034 0.92792 1.21678 0.94567 1.02081 1.00323 1.22373 0.91174 0.90132 0.98335 0.90744 1.23428 0.90091 0.96904 0.94060 1.86364 1.58932 1.35025 1.57343 1.63841 1.03317 1.26933 1.29698 1.21031 0.89638 0.93426 0.97006 1.21717 1.00268 1.22917 1.09505 0.93668 1.25606 1.01418 0.95454 0.95823 1.70058 1.33574 1.29097 1.26166 0.85903 0.79610 0.79654 0.78921 1.18730 1.22213 1.18465 0.93583 0.95199 0.91818 0.91177 0.91266 0.89522 0.90873 0.91286 0.92605 0.91686 0.94653 0.89385 0.77525 0.90343 0.96478 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.06 8.65 71.98 0.62 -4.44 16 2 C -0.09 -3.08 5.67 30.60 0.17 -2.90 16 3 C 0.06 2.15 2.21 45.38 0.10 2.25 16 4 H 0.04 1.99 5.48 -2.39 -0.01 1.98 16 5 C -0.11 -3.43 5.94 31.98 0.19 -3.24 16 6 C -0.10 -3.40 3.07 -9.61 -0.03 -3.43 16 7 H 0.05 1.99 7.85 -2.39 -0.02 1.97 16 8 C -0.13 -3.15 9.14 71.98 0.66 -2.49 16 9 C 0.09 3.34 3.17 45.26 0.14 3.48 16 10 H 0.07 2.72 7.79 -2.39 -0.02 2.70 16 11 C 0.03 1.30 5.56 71.98 0.40 1.70 16 12 O -0.57 -22.43 10.63 -148.98 -1.58 -24.01 16 13 N -0.52 -21.42 4.87 -840.32 -4.09 -25.51 16 14 C 0.12 5.53 3.46 85.56 0.30 5.82 16 15 C -0.51 -27.00 5.22 25.60 0.13 -26.87 16 16 H 0.05 2.67 6.22 -2.91 -0.02 2.66 16 17 C 0.01 0.79 5.47 84.66 0.46 1.26 16 18 N -0.95 -56.97 13.96 21.45 0.30 -56.67 16 19 Si 0.93 44.17 27.46 68.60 1.88 46.06 16 20 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 21 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 22 H -0.26 -12.08 6.56 99.48 0.65 -11.43 16 23 H 0.05 1.77 6.28 -2.39 -0.02 1.76 16 24 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.09 2.35 7.96 -2.39 -0.02 2.33 16 29 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 1.46 8.09 -2.39 -0.02 1.44 16 33 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.09 4.27 4.08 -2.39 -0.01 4.26 16 35 H 0.38 12.29 9.12 -48.21 -0.44 11.85 16 36 H 0.08 3.83 3.96 6.90 0.03 3.85 16 37 H 0.02 0.86 4.62 -2.39 -0.01 0.85 16 38 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -62.07 280.13 0.25 -61.83 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: 0.59 Total: 27.16 kcal Atomic # 6 Polarization: -32.00 SS G_CDS: 3.15 Total: -28.85 kcal Atomic # 7 Polarization: -78.39 SS G_CDS: -3.79 Total: -82.18 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -1.58 Total: -24.01 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.88 Total: 46.06 kcal Total: -62.07 0.25 -61.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142673543.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.495 kcal (2) G-P(sol) polarization free energy of solvation -62.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds