Wall clock time and date at job start Mon Mar 30 2020 03:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46716 * 2 1 4 4 H 1.09006 * 109.46578 * 181.53934 * 3 2 1 5 5 C 1.50695 * 109.47087 * 61.54457 * 3 2 1 6 6 H 1.08004 * 120.00008 * 245.22116 * 5 3 2 7 7 C 1.37879 * 120.00250 * 65.22783 * 5 3 2 8 8 N 1.31517 * 120.00018 * 8.74205 * 7 5 3 9 9 Si 1.86806 * 119.99969 * 188.74952 * 7 5 3 10 10 H 1.48499 * 109.46794 * 179.97438 * 9 7 5 11 11 H 1.48499 * 109.47133 * 299.99430 * 9 7 5 12 12 H 1.48494 * 109.47142 * 59.99623 * 9 7 5 13 13 N 1.46896 * 109.47332 * 301.53928 * 3 2 1 14 14 C 1.46899 * 111.00441 * 272.48777 * 13 3 2 15 15 C 1.53002 * 109.47287 * 184.58257 * 14 13 3 16 16 C 1.52999 * 115.54345 * 276.43568 * 15 14 13 17 17 C 1.52991 * 109.47450 * 299.44581 * 16 15 14 18 18 O 1.42910 * 109.47057 * 183.86130 * 17 16 15 19 19 C 1.52995 * 117.49863 * 130.73058 * 15 14 13 20 20 C 1.52990 * 117.49827 * 62.10702 * 15 14 13 21 21 H 1.08999 * 109.47184 * 304.76110 * 1 2 3 22 22 H 1.08998 * 109.47713 * 64.76278 * 1 2 3 23 23 H 1.09004 * 109.47060 * 184.76600 * 1 2 3 24 24 H 1.08996 * 109.46623 * 240.00565 * 2 1 3 25 25 H 1.08991 * 109.46997 * 120.00012 * 2 1 3 26 26 H 0.97003 * 119.99680 * 356.27680 * 8 7 5 27 27 H 1.00902 * 110.99840 * 148.53271 * 13 3 2 28 28 H 1.09007 * 109.46997 * 304.58019 * 14 13 3 29 29 H 1.08997 * 109.46958 * 64.57424 * 14 13 3 30 30 H 1.09002 * 109.47268 * 59.44915 * 16 15 14 31 31 H 1.09008 * 109.46533 * 179.44454 * 16 15 14 32 32 H 1.09001 * 109.47350 * 303.85977 * 17 16 15 33 33 H 1.08999 * 109.47155 * 63.86598 * 17 16 15 34 34 H 0.96699 * 113.99677 * 180.02562 * 18 17 16 35 35 H 1.09001 * 117.50059 * 359.97438 * 19 15 14 36 36 H 1.09001 * 117.49622 * 145.01396 * 19 15 14 37 37 H 1.09004 * 117.49713 * 214.97540 * 20 15 14 38 38 H 1.08996 * 117.50427 * 359.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1296 1.4426 -0.0276 5 6 1.5691 2.1417 1.2491 6 1 0.8782 2.9688 1.1772 7 6 2.0202 1.7257 2.4838 8 7 2.9873 0.8382 2.5657 9 14 1.2577 2.4226 4.0403 10 1 1.9142 1.8174 5.2268 11 1 1.4459 3.8953 4.0672 12 1 -0.1935 2.1085 4.0640 13 7 1.5201 2.1457 -1.1804 14 6 2.4062 1.9591 -2.3370 15 6 1.8950 2.7959 -3.5115 16 6 0.7888 2.1510 -4.3489 17 6 1.3048 0.8454 -4.9569 18 8 0.3031 0.2889 -5.8109 19 6 2.9062 3.6838 -4.2393 20 6 1.8496 4.3144 -3.3300 21 1 -0.3633 0.5859 0.8443 22 1 -0.3634 0.4381 -0.9295 23 1 -0.3633 -1.0241 0.0854 24 1 1.8932 -0.5137 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.3462 0.4361 1.7592 27 1 1.3816 3.1259 -0.9854 28 1 3.4157 2.2773 -2.0764 29 1 2.4186 0.9063 -2.6191 30 1 -0.0720 1.9409 -3.7140 31 1 0.4937 2.8320 -5.1473 32 1 2.2059 1.0457 -5.5366 33 1 1.5353 0.1392 -4.1592 34 1 0.5622 -0.5424 -6.2313 35 1 3.9356 3.6722 -3.8813 36 1 2.7836 3.8086 -5.3152 37 1 1.0319 4.8541 -3.8078 38 1 2.1835 4.7173 -2.3739 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156786231.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:40 Heat of formation + Delta-G solvation = -47.076699 kcal Electronic energy + Delta-G solvation = -16462.192707 eV Core-core repulsion = 13918.582101 eV Total energy + Delta-G solvation = -2543.610606 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.76193 -36.60041 -35.86814 -32.31949 -30.61011 -30.34199 -26.58281 -24.08564 -23.43315 -23.21425 -22.01553 -19.34164 -18.64754 -17.40789 -16.84468 -15.46643 -15.14760 -14.40696 -14.07124 -13.81806 -13.71495 -13.67815 -13.13588 -12.25467 -12.06520 -11.85036 -11.66820 -11.46441 -11.33326 -11.10759 -10.83979 -10.78003 -10.21046 -10.09844 -10.04299 -9.90255 -9.74794 -9.68803 -9.53095 -8.55850 -8.24090 -7.32063 -6.36013 -4.06542 3.42752 3.45935 3.63523 3.82349 4.27252 4.51570 4.85245 4.95720 5.01636 5.22044 5.35966 5.38277 5.51079 5.59433 5.67329 5.73964 5.95961 6.02098 6.13838 6.24067 6.30462 6.32513 6.41875 6.45389 6.47581 6.64256 6.98543 7.08595 7.26645 7.51056 7.55929 7.61913 7.90331 8.12712 8.53774 8.61400 8.87899 9.64619 11.01229 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032397 B = 0.006801 C = 0.006140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.062040 B = 4116.068753 C = 4559.521456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.104 4.104 3 C 0.203 3.797 4 H -0.009 1.009 5 C -0.595 4.595 6 H 0.053 0.947 7 C 0.023 3.977 8 N -0.910 5.910 9 Si 1.066 2.934 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.287 1.287 13 N -0.675 5.675 14 C 0.094 3.906 15 C -0.112 4.112 16 C -0.072 4.072 17 C 0.078 3.922 18 O -0.578 6.578 19 C -0.181 4.181 20 C -0.167 4.167 21 H 0.059 0.941 22 H 0.047 0.953 23 H 0.016 0.984 24 H 0.017 0.983 25 H 0.057 0.943 26 H 0.270 0.730 27 H 0.334 0.666 28 H 0.019 0.981 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.041 0.959 33 H 0.051 0.949 34 H 0.376 0.624 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.418 1.769 -12.934 13.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.143 4.143 3 C 0.095 3.905 4 H 0.009 0.991 5 C -0.634 4.634 6 H 0.071 0.929 7 C -0.182 4.182 8 N -0.547 5.547 9 Si 0.894 3.106 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.213 1.213 13 N -0.306 5.306 14 C -0.036 4.036 15 C -0.113 4.113 16 C -0.109 4.109 17 C 0.000 4.000 18 O -0.383 6.383 19 C -0.218 4.218 20 C -0.204 4.204 21 H 0.078 0.922 22 H 0.067 0.933 23 H 0.036 0.964 24 H 0.035 0.965 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.152 0.848 28 H 0.038 0.962 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.222 0.778 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.057 1.755 -11.241 11.562 hybrid contribution 1.077 0.077 -1.606 1.935 sum -0.980 1.831 -12.847 13.014 Atomic orbital electron populations 1.21424 0.96484 0.97803 1.01974 1.21482 0.96286 0.98352 0.98185 1.19245 0.92176 0.91339 0.87723 0.99117 1.21973 1.30908 1.18646 0.91843 0.92884 1.25710 0.94705 0.96213 1.01555 1.70803 1.22912 1.27982 1.32971 0.83586 0.75815 0.75575 0.75599 1.20893 1.21600 1.21331 1.60558 1.47858 1.16933 1.05223 1.21503 0.93614 0.98371 0.90099 1.21437 0.98921 0.92143 0.98772 1.20865 0.97633 0.94689 0.97757 1.22195 0.89802 0.95557 0.92404 1.86456 1.44069 1.42720 1.65034 1.23092 0.95637 1.05088 0.98034 1.22913 1.01199 0.94992 1.01302 0.92174 0.93342 0.96448 0.96466 0.92436 0.91835 0.84791 0.96249 0.91575 0.89992 0.91981 0.94087 0.93103 0.77803 0.89046 0.89118 0.88938 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 9.52 37.16 0.35 -2.29 16 2 C -0.10 -2.47 5.51 -26.73 -0.15 -2.62 16 3 C 0.20 5.01 1.93 -68.87 -0.13 4.87 16 4 H -0.01 -0.23 7.08 -51.93 -0.37 -0.60 16 5 C -0.60 -16.14 7.22 -34.44 -0.25 -16.38 16 6 H 0.05 1.44 7.65 -52.48 -0.40 1.04 16 7 C 0.02 0.64 5.20 -17.82 -0.09 0.55 16 8 N -0.91 -26.94 13.07 55.43 0.72 -26.22 16 9 Si 1.07 24.94 29.91 -169.99 -5.08 19.85 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.67 -14.02 5.60 -107.95 -0.60 -14.63 16 14 C 0.09 1.66 5.47 -3.82 -0.02 1.64 16 15 C -0.11 -1.63 1.79 -154.51 -0.28 -1.90 16 16 C -0.07 -1.02 5.49 -26.74 -0.15 -1.16 16 17 C 0.08 1.01 6.76 37.15 0.25 1.26 16 18 O -0.58 -7.35 13.66 -35.23 -0.48 -7.84 16 19 C -0.18 -2.27 9.89 -26.74 -0.26 -2.53 16 20 C -0.17 -2.26 9.39 -26.74 -0.25 -2.51 16 21 H 0.06 1.44 7.11 -51.93 -0.37 1.07 16 22 H 0.05 1.03 7.72 -51.93 -0.40 0.63 16 23 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 24 H 0.02 0.37 7.76 -51.93 -0.40 -0.03 16 25 H 0.06 1.49 6.32 -51.93 -0.33 1.16 16 26 H 0.27 7.99 5.94 -40.82 -0.24 7.75 16 27 H 0.33 7.01 7.28 -39.29 -0.29 6.72 16 28 H 0.02 0.36 7.71 -51.93 -0.40 -0.04 16 29 H 0.07 1.18 6.02 -51.93 -0.31 0.87 16 30 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.06 0.83 8.11 -51.92 -0.42 0.40 16 32 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.70 6.72 -51.93 -0.35 0.35 16 34 H 0.38 2.97 9.12 45.56 0.42 3.38 16 35 H 0.09 1.14 8.06 -51.93 -0.42 0.72 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.10 1.37 7.81 -51.93 -0.41 0.96 16 LS Contribution 302.85 15.07 4.56 4.56 Total: -1.00 -29.79 302.85 -7.46 -37.25 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -5.60 Total: 8.10 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: -0.98 Total: -21.08 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 0.12 Total: -40.85 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: -0.48 Total: -7.84 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -5.08 Total: 19.85 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.79 -7.46 -37.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156786231.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.825 kcal (2) G-P(sol) polarization free energy of solvation -29.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds