Wall clock time and date at job start Mon Mar 30 2020 03:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46716 * 2 1 4 4 H 1.09006 * 109.46578 * 181.53934 * 3 2 1 5 5 C 1.50695 * 109.47087 * 61.54457 * 3 2 1 6 6 H 1.08004 * 120.00008 * 245.22116 * 5 3 2 7 7 C 1.37879 * 120.00250 * 65.22783 * 5 3 2 8 8 N 1.31517 * 120.00018 * 8.74205 * 7 5 3 9 9 Si 1.86806 * 119.99969 * 188.74952 * 7 5 3 10 10 H 1.48499 * 109.46794 * 179.97438 * 9 7 5 11 11 H 1.48499 * 109.47133 * 299.99430 * 9 7 5 12 12 H 1.48494 * 109.47142 * 59.99623 * 9 7 5 13 13 N 1.46896 * 109.47332 * 301.53928 * 3 2 1 14 14 C 1.46899 * 111.00441 * 272.48777 * 13 3 2 15 15 C 1.53002 * 109.47287 * 184.58257 * 14 13 3 16 16 C 1.52999 * 115.54345 * 276.43568 * 15 14 13 17 17 C 1.52991 * 109.47450 * 299.44581 * 16 15 14 18 18 O 1.42910 * 109.47057 * 183.86130 * 17 16 15 19 19 C 1.52995 * 117.49863 * 130.73058 * 15 14 13 20 20 C 1.52990 * 117.49827 * 62.10702 * 15 14 13 21 21 H 1.08999 * 109.47184 * 304.76110 * 1 2 3 22 22 H 1.08998 * 109.47713 * 64.76278 * 1 2 3 23 23 H 1.09004 * 109.47060 * 184.76600 * 1 2 3 24 24 H 1.08996 * 109.46623 * 240.00565 * 2 1 3 25 25 H 1.08991 * 109.46997 * 120.00012 * 2 1 3 26 26 H 0.97003 * 119.99680 * 356.27680 * 8 7 5 27 27 H 1.00902 * 110.99840 * 148.53271 * 13 3 2 28 28 H 1.09007 * 109.46997 * 304.58019 * 14 13 3 29 29 H 1.08997 * 109.46958 * 64.57424 * 14 13 3 30 30 H 1.09002 * 109.47268 * 59.44915 * 16 15 14 31 31 H 1.09008 * 109.46533 * 179.44454 * 16 15 14 32 32 H 1.09001 * 109.47350 * 303.85977 * 17 16 15 33 33 H 1.08999 * 109.47155 * 63.86598 * 17 16 15 34 34 H 0.96699 * 113.99677 * 180.02562 * 18 17 16 35 35 H 1.09001 * 117.50059 * 359.97438 * 19 15 14 36 36 H 1.09001 * 117.49622 * 145.01396 * 19 15 14 37 37 H 1.09004 * 117.49713 * 214.97540 * 20 15 14 38 38 H 1.08996 * 117.50427 * 359.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1296 1.4426 -0.0276 5 6 1.5691 2.1417 1.2491 6 1 0.8782 2.9688 1.1772 7 6 2.0202 1.7257 2.4838 8 7 2.9873 0.8382 2.5657 9 14 1.2577 2.4226 4.0403 10 1 1.9142 1.8174 5.2268 11 1 1.4459 3.8953 4.0672 12 1 -0.1935 2.1085 4.0640 13 7 1.5201 2.1457 -1.1804 14 6 2.4062 1.9591 -2.3370 15 6 1.8950 2.7959 -3.5115 16 6 0.7888 2.1510 -4.3489 17 6 1.3048 0.8454 -4.9569 18 8 0.3031 0.2889 -5.8109 19 6 2.9062 3.6838 -4.2393 20 6 1.8496 4.3144 -3.3300 21 1 -0.3633 0.5859 0.8443 22 1 -0.3634 0.4381 -0.9295 23 1 -0.3633 -1.0241 0.0854 24 1 1.8932 -0.5137 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.3462 0.4361 1.7592 27 1 1.3816 3.1259 -0.9854 28 1 3.4157 2.2773 -2.0764 29 1 2.4186 0.9063 -2.6191 30 1 -0.0720 1.9409 -3.7140 31 1 0.4937 2.8320 -5.1473 32 1 2.2059 1.0457 -5.5366 33 1 1.5353 0.1392 -4.1592 34 1 0.5622 -0.5424 -6.2313 35 1 3.9356 3.6722 -3.8813 36 1 2.7836 3.8086 -5.3152 37 1 1.0319 4.8541 -3.8078 38 1 2.1835 4.7173 -2.3739 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156786231.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:39 Heat of formation + Delta-G solvation = -67.772949 kcal Electronic energy + Delta-G solvation = -16463.090164 eV Core-core repulsion = 13918.582101 eV Total energy + Delta-G solvation = -2544.508062 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.99078 -37.96598 -37.31185 -34.24330 -32.44432 -31.42294 -28.39962 -25.91797 -25.24676 -24.30523 -23.10447 -21.26427 -19.94115 -18.93303 -18.24007 -16.72586 -16.42614 -16.03769 -15.68218 -15.42382 -15.29296 -15.06042 -14.67027 -13.97917 -13.67839 -13.44653 -13.08257 -12.96982 -12.62680 -12.51474 -12.37479 -12.17374 -11.99325 -11.96453 -11.75353 -11.54539 -11.13595 -10.80292 -10.76663 -10.56958 -10.33521 -9.08996 -8.58459 -6.29440 1.53705 1.61180 1.79734 2.56504 2.73483 3.21610 3.31436 3.54281 3.78972 3.87950 4.10582 4.18199 4.34670 4.40013 4.44605 4.53966 4.57440 4.67906 4.74267 4.77421 4.81216 4.98658 5.03783 5.11639 5.19109 5.23212 5.24012 5.30478 5.37342 5.55023 5.68544 5.90039 6.09742 6.49996 6.62723 6.84627 6.88543 7.50284 8.78913 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032397 B = 0.006801 C = 0.006140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.062040 B = 4116.068753 C = 4559.521456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.099 4.099 3 C 0.208 3.792 4 H -0.043 1.043 5 C -0.600 4.600 6 H 0.050 0.950 7 C -0.025 4.025 8 N -0.936 5.936 9 Si 1.110 2.890 10 H -0.287 1.287 11 H -0.272 1.272 12 H -0.272 1.272 13 N -0.668 5.668 14 C 0.097 3.903 15 C -0.123 4.123 16 C -0.067 4.067 17 C 0.081 3.919 18 O -0.593 6.593 19 C -0.159 4.159 20 C -0.169 4.169 21 H 0.038 0.962 22 H 0.055 0.945 23 H 0.038 0.962 24 H 0.031 0.969 25 H 0.030 0.970 26 H 0.258 0.742 27 H 0.332 0.668 28 H 0.007 0.993 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.038 0.962 34 H 0.396 0.604 35 H 0.091 0.909 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.207 2.443 -14.290 14.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.138 4.138 3 C 0.098 3.902 4 H -0.025 1.025 5 C -0.638 4.638 6 H 0.068 0.932 7 C -0.224 4.224 8 N -0.573 5.573 9 Si 0.932 3.068 10 H -0.213 1.213 11 H -0.198 1.198 12 H -0.197 1.197 13 N -0.299 5.299 14 C -0.032 4.032 15 C -0.124 4.124 16 C -0.104 4.104 17 C 0.004 3.996 18 O -0.401 6.401 19 C -0.196 4.196 20 C -0.207 4.207 21 H 0.058 0.942 22 H 0.075 0.925 23 H 0.057 0.943 24 H 0.050 0.950 25 H 0.049 0.951 26 H 0.068 0.932 27 H 0.150 0.850 28 H 0.025 0.975 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.245 0.755 35 H 0.109 0.891 36 H 0.133 0.867 37 H 0.127 0.873 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.849 2.423 -12.637 13.178 hybrid contribution 1.345 -0.145 -1.266 1.853 sum -1.504 2.278 -13.903 14.168 Atomic orbital electron populations 1.21298 0.94960 0.98896 1.01375 1.21369 0.97473 0.97420 0.97512 1.19080 0.90129 0.92303 0.88643 1.02540 1.22255 1.30189 1.18389 0.92945 0.93203 1.27037 0.94436 0.95980 1.04926 1.70917 1.24521 1.29548 1.32353 0.83018 0.75736 0.75898 0.72130 1.21302 1.19775 1.19739 1.60514 1.48252 1.16447 1.04645 1.21489 0.92527 0.99096 0.90111 1.21258 1.00495 0.92298 0.98307 1.20788 0.96433 0.95651 0.97537 1.22107 0.90412 0.94686 0.92403 1.86404 1.44437 1.44210 1.65057 1.23160 0.95035 1.02282 0.99125 1.22967 1.02304 0.94068 1.01324 0.94245 0.92547 0.94250 0.95047 0.95122 0.93155 0.85004 0.97508 0.91761 0.92416 0.90679 0.92229 0.94400 0.75452 0.89060 0.86682 0.87320 0.89999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.70 9.52 71.98 0.69 -4.02 16 2 C -0.10 -4.73 5.51 30.59 0.17 -4.56 16 3 C 0.21 10.42 1.93 44.17 0.09 10.51 16 4 H -0.04 -2.41 7.08 -2.38 -0.02 -2.43 16 5 C -0.60 -32.87 7.22 25.60 0.18 -32.69 16 6 H 0.05 2.72 7.65 -2.91 -0.02 2.70 16 7 C -0.02 -1.40 5.20 84.65 0.44 -0.96 16 8 N -0.94 -56.62 13.07 21.45 0.28 -56.34 16 9 Si 1.11 50.05 29.91 68.60 2.05 52.10 16 10 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 11 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 12 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 13 N -0.67 -27.90 5.60 -495.45 -2.78 -30.68 16 14 C 0.10 3.42 5.47 86.30 0.47 3.89 16 15 C -0.12 -3.38 1.79 -52.19 -0.09 -3.47 16 16 C -0.07 -1.76 5.49 30.59 0.17 -1.59 16 17 C 0.08 1.94 6.76 71.98 0.49 2.43 16 18 O -0.59 -13.77 13.66 -148.98 -2.04 -15.80 16 19 C -0.16 -3.55 9.89 30.59 0.30 -3.25 16 20 C -0.17 -4.27 9.39 30.59 0.29 -3.98 16 21 H 0.04 1.85 7.11 -2.39 -0.02 1.84 16 22 H 0.06 2.34 7.72 -2.39 -0.02 2.32 16 23 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.03 1.38 7.76 -2.39 -0.02 1.36 16 25 H 0.03 1.61 6.32 -2.39 -0.02 1.60 16 26 H 0.26 15.84 5.94 -92.71 -0.55 15.29 16 27 H 0.33 14.00 7.28 -89.69 -0.65 13.35 16 28 H 0.01 0.26 7.71 -2.38 -0.02 0.24 16 29 H 0.06 2.28 6.02 -2.39 -0.01 2.26 16 30 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.07 1.79 8.11 -2.38 -0.02 1.77 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.04 0.99 6.72 -2.39 -0.02 0.98 16 34 H 0.40 5.34 9.12 -74.06 -0.68 4.66 16 35 H 0.09 2.07 8.06 -2.39 -0.02 2.05 16 36 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.11 2.39 8.14 -2.38 -0.02 2.37 16 38 H 0.08 2.29 7.81 -2.39 -0.02 2.27 16 Total: -1.00 -63.90 302.85 0.64 -63.26 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: -0.07 Total: 25.16 kcal Atomic # 6 Polarization: -40.88 SS G_CDS: 3.19 Total: -37.70 kcal Atomic # 7 Polarization: -84.52 SS G_CDS: -2.50 Total: -87.01 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -2.04 Total: -15.80 kcal Atomic # 14 Polarization: 50.05 SS G_CDS: 2.05 Total: 52.10 kcal Total: -63.90 0.64 -63.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156786231.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.512 kcal (2) G-P(sol) polarization free energy of solvation -63.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds