Wall clock time and date at job start Mon Mar 30 2020 03:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47169 * 2 1 4 4 H 1.09000 * 109.47041 * 178.52405 * 3 2 1 5 5 C 1.50701 * 109.47579 * 58.52234 * 3 2 1 6 6 H 1.08003 * 120.00179 * 240.00064 * 5 3 2 7 7 C 1.37880 * 120.00164 * 59.72107 * 5 3 2 8 8 N 1.31516 * 119.99438 * 0.27844 * 7 5 3 9 9 Si 1.86793 * 120.00368 * 180.27750 * 7 5 3 10 10 H 1.48500 * 109.47227 * 90.00269 * 9 7 5 11 11 H 1.48499 * 109.47258 * 210.00142 * 9 7 5 12 12 H 1.48503 * 109.47283 * 330.00246 * 9 7 5 13 13 N 1.46902 * 109.47314 * 298.52118 * 3 2 1 14 14 C 1.47902 * 110.99795 * 80.38900 * 13 3 2 15 15 C 1.54001 * 107.05684 * 214.15798 * 14 13 3 16 16 C 1.54597 * 105.13677 * 1.22297 * 15 14 13 17 17 H 1.08996 * 110.72560 * 263.59879 * 16 15 14 18 18 C 1.53006 * 110.72168 * 140.31544 * 16 15 14 19 19 H 1.09000 * 109.47017 * 301.45175 * 18 16 15 20 20 C 1.53003 * 109.46975 * 61.45053 * 18 16 15 21 21 O 1.42893 * 109.47045 * 181.45173 * 18 16 15 22 22 C 1.48533 * 110.99939 * 322.99388 * 13 3 2 23 23 H 1.08990 * 109.47321 * 188.37997 * 1 2 3 24 24 H 1.09004 * 109.47152 * 308.37950 * 1 2 3 25 25 H 1.08999 * 109.46739 * 68.37621 * 1 2 3 26 26 H 1.08995 * 109.46703 * 239.99876 * 2 1 3 27 27 H 1.09002 * 109.46653 * 119.99498 * 2 1 3 28 28 H 0.97006 * 120.00061 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.91794 * 333.50606 * 14 13 3 30 30 H 1.08996 * 109.91958 * 94.60854 * 14 13 3 31 31 H 1.09003 * 110.31101 * 120.13907 * 15 14 13 32 32 H 1.08998 * 110.30619 * 242.20806 * 15 14 13 33 33 H 1.09007 * 109.46796 * 60.00130 * 20 18 16 34 34 H 1.09001 * 109.46755 * 179.97438 * 20 18 16 35 35 H 1.08996 * 109.47297 * 300.00360 * 20 18 16 36 36 H 0.96695 * 114.00520 * 300.00247 * 21 18 16 37 37 H 1.08999 * 110.66338 * 278.15406 * 22 13 3 38 38 H 1.08997 * 110.66859 * 41.28337 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1297 1.4425 0.0265 5 6 1.5081 2.1634 1.2117 6 1 0.8899 3.0406 1.0900 7 6 1.8058 1.6999 2.4757 8 7 2.5586 0.6317 2.6239 9 14 1.1401 2.5891 3.9775 10 1 -0.1787 2.0158 4.3480 11 1 2.0867 2.4252 5.1098 12 1 0.9829 4.0331 3.6686 13 7 1.5798 2.1246 -1.2169 14 6 0.1789 2.5767 -1.0734 15 6 -0.4790 2.4562 -2.4606 16 6 0.6222 1.8818 -3.3811 17 1 1.1271 2.6811 -3.9237 18 6 0.0356 0.8539 -4.3507 19 1 -0.4356 0.0493 -3.7860 20 6 -1.0081 1.5307 -5.2416 21 8 1.0800 0.3164 -5.1645 22 6 1.5902 1.2017 -2.3807 23 1 -0.3633 -1.0166 0.1498 24 1 -0.3634 0.6381 0.8056 25 1 -0.3633 0.3787 -0.9554 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 2.7684 0.3058 3.5131 29 1 -0.3445 1.9426 -0.3579 30 1 0.1559 3.6132 -0.7371 31 1 -1.3295 1.7758 -2.4181 32 1 -0.7971 3.4367 -2.8149 33 1 -0.5368 2.3353 -5.8063 34 1 -1.4256 0.7984 -5.9327 35 1 -1.8047 1.9407 -4.6209 36 1 1.5443 0.9774 -5.6960 37 1 2.5919 1.1281 -2.8042 38 1 1.2190 0.2176 -2.0947 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165855074.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:56 Heat of formation + Delta-G solvation = -39.705823 kcal Electronic energy + Delta-G solvation = -17193.943224 eV Core-core repulsion = 14650.652243 eV Total energy + Delta-G solvation = -2543.290980 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.40835 -37.08021 -34.01002 -31.84487 -30.51165 -28.85930 -28.33498 -25.96298 -23.64111 -22.62194 -20.81790 -19.80339 -18.89159 -16.63183 -16.01149 -15.54698 -15.09564 -14.62528 -14.21338 -13.59179 -13.48535 -13.02997 -12.74333 -12.42003 -12.11732 -11.75378 -11.45396 -11.23538 -10.97798 -10.92180 -10.84508 -10.66816 -10.60073 -10.17948 -10.14625 -9.93542 -9.78547 -9.48172 -9.41104 -8.74632 -8.38268 -7.00930 -6.00190 -4.03987 3.29031 3.36545 3.39893 4.39897 4.44964 4.79948 5.02628 5.20844 5.30582 5.33917 5.45118 5.52409 5.62602 5.86756 5.94036 6.02155 6.14430 6.22220 6.31029 6.35873 6.37971 6.56212 6.58947 6.68168 6.83867 6.87201 6.96437 7.28684 7.39160 7.62442 7.72900 7.74224 7.81088 8.07998 8.43841 8.59442 9.01501 9.60119 11.06065 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.047915 B = 0.007429 C = 0.007036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.223297 B = 3768.300128 C = 3978.655114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.149 4.149 3 C 0.203 3.797 4 H 0.040 0.960 5 C -0.506 4.506 6 H 0.063 0.937 7 C 0.062 3.938 8 N -0.890 5.890 9 Si 0.891 3.109 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.514 5.514 14 C 0.030 3.970 15 C -0.126 4.126 16 C -0.123 4.123 17 H 0.075 0.925 18 C 0.110 3.890 19 H 0.095 0.905 20 C -0.183 4.183 21 O -0.563 6.563 22 C 0.033 3.967 23 H 0.021 0.979 24 H 0.067 0.933 25 H 0.039 0.961 26 H 0.025 0.975 27 H 0.093 0.907 28 H 0.260 0.740 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.371 0.629 37 H 0.065 0.935 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.922 1.092 -11.414 12.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.188 4.188 3 C 0.097 3.903 4 H 0.058 0.942 5 C -0.545 4.545 6 H 0.081 0.919 7 C -0.140 4.140 8 N -0.529 5.529 9 Si 0.719 3.281 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.237 5.237 14 C -0.098 4.098 15 C -0.164 4.164 16 C -0.142 4.142 17 H 0.093 0.907 18 C 0.050 3.950 19 H 0.113 0.887 20 C -0.241 4.241 21 O -0.368 6.368 22 C -0.095 4.095 23 H 0.040 0.960 24 H 0.086 0.914 25 H 0.058 0.942 26 H 0.043 0.957 27 H 0.112 0.888 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.217 0.783 37 H 0.083 0.917 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.673 0.876 -11.041 12.444 hybrid contribution -0.696 0.314 0.862 1.151 sum -6.369 1.189 -10.179 12.067 Atomic orbital electron populations 1.21987 0.98343 0.98857 1.00650 1.22125 0.94455 1.01409 1.00849 1.19448 0.96057 0.88827 0.86017 0.94202 1.21226 1.31466 1.11760 0.90013 0.91899 1.24914 0.95196 0.95034 0.98845 1.69883 1.37329 1.23085 1.22590 0.86609 0.78638 0.80187 0.82680 1.20829 1.21271 1.19900 1.65074 1.19012 1.34591 1.05072 1.23101 0.90613 1.01241 0.94836 1.22480 0.97324 0.99942 0.96638 1.22795 0.97292 0.97585 0.96537 0.90680 1.21986 0.86931 0.95743 0.90296 0.88699 1.22509 1.00181 1.00928 1.00445 1.86577 1.50783 1.38726 1.60727 1.23362 0.98282 0.96380 0.91479 0.95956 0.91373 0.94220 0.95651 0.88826 0.93025 0.90419 0.92210 0.92305 0.92207 0.92541 0.92332 0.91432 0.78253 0.91681 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 7.87 37.16 0.29 -2.72 16 2 C -0.15 -3.53 4.90 -26.73 -0.13 -3.66 16 3 C 0.20 5.10 2.79 -68.87 -0.19 4.91 16 4 H 0.04 1.13 8.14 -51.93 -0.42 0.71 16 5 C -0.51 -13.51 6.32 -34.44 -0.22 -13.73 16 6 H 0.06 1.68 6.19 -52.48 -0.33 1.35 16 7 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 8 N -0.89 -25.10 11.32 55.43 0.63 -24.47 16 9 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 13 N -0.51 -11.13 5.46 -223.89 -1.22 -12.36 16 14 C 0.03 0.59 4.30 -2.75 -0.01 0.57 16 15 C -0.13 -1.92 5.00 -25.37 -0.13 -2.05 16 16 C -0.12 -1.82 2.82 -88.76 -0.25 -2.07 16 17 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 18 C 0.11 1.42 2.99 -26.73 -0.08 1.34 16 19 H 0.10 1.33 8.12 -51.93 -0.42 0.91 16 20 C -0.18 -1.90 9.33 37.16 0.35 -1.56 16 21 O -0.56 -7.45 13.15 -35.23 -0.46 -7.91 16 22 C 0.03 0.62 4.89 -1.90 -0.01 0.61 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.07 1.57 6.09 -51.93 -0.32 1.25 16 25 H 0.04 0.76 4.27 -51.93 -0.22 0.54 16 26 H 0.03 0.57 5.96 -51.93 -0.31 0.26 16 27 H 0.09 2.49 6.10 -51.93 -0.32 2.18 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.08 1.62 3.52 -51.93 -0.18 1.44 16 30 H 0.06 1.21 7.64 -51.93 -0.40 0.81 16 31 H 0.06 0.84 7.33 -51.93 -0.38 0.46 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.68 7.16 -51.93 -0.37 0.31 16 36 H 0.37 3.53 9.05 45.56 0.41 3.94 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.06 1.19 4.11 -51.93 -0.21 0.98 16 LS Contribution 278.16 15.07 4.19 4.19 Total: -1.00 -28.46 278.16 -7.50 -35.97 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -5.14 Total: 5.25 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: -0.47 Total: -16.78 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: -0.60 Total: -36.83 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: -0.46 Total: -7.91 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.46 -7.50 -35.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165855074.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.740 kcal (2) G-P(sol) polarization free energy of solvation -28.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds